Guide to the Human Genome
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Name: LOC729523 Sequence: fasta or formatted (78aa) NCBI GI: 169203490
Description:

PREDICTED: similar to beta-defensin 130

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt mRNA [78aa] PREDICTED: similar to beta-defensin 130
alt mRNA [78aa] PREDICTED: similar to beta-defensin 130
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.3          1           1
 C cysteine            6.4          5           1
 D aspartate           3.8          3           2
 E glutamate           2.6          2           1
 F phenylalanine       1.3          1           1
 G glycine             9.0          7           1
 H histidine           1.3          1           1
 I isoleucine          9.0          7           1
 K lysine             12.8         10           2
 L leucine            12.8         10           3
 M methionine          1.3          1           1
 N asparagine          1.3          1           1
 P proline             9.0          7           1
 Q glutamine           2.6          2           1
 R arginine            3.8          3           2
 S serine              5.1          4           1
 T threonine           6.4          5           1
 V valine              6.4          5           1
 W tryptophan          2.6          2           2
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to beta-defensin 130 
LOC729523             1.000   PREDICTED: similar to beta-defensin 130 
LOC729523             1.000   PREDICTED: similar to beta-defensin 130 
LOC100133267          0.972   PREDICTED: similar to beta-defensin 130 
DEFB130               0.972   beta-defensin 130 
LOC100293245          0.909   PREDICTED: similar to beta-defensin 130 
LOC100290863          0.909   PREDICTED: hypothetical protein XP_002346650 
LOC100288554          0.909   PREDICTED: hypothetical protein XP_002342487 
LOC100287106          0.343   PREDICTED: hypothetical protein XP_002342470 
LOC100286963          0.329   PREDICTED: hypothetical protein XP_002342858 
LOC100287535          0.315   PREDICTED: hypothetical protein XP_002343194 
DEFB133               0.042   PREDICTED: defensin, beta 133 
DEFB133               0.042   PREDICTED: defensin, beta 133 
DEFB133               0.042   PREDICTED: beta-defensin 133 
ZBTB44                0.014   zinc finger and BTB domain containing 44 
LOC100287524          0.007   PREDICTED: hypothetical protein XP_002342307 
ADAMTS2               0.007   ADAM metallopeptidase with thrombospondin type 1 mo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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