Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287642 Sequence: fasta or formatted (139aa) NCBI GI: 239742865
Description:

PREDICTED: hypothetical protein XP_002342666

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         11           2
 C cysteine            5.8          8           1
 D aspartate           3.6          5           1
 E glutamate           0.7          1           1
 F phenylalanine       5.8          8           1
 G glycine             9.4         13           4
 H histidine           0.0          0           0
 I isoleucine          1.4          2           1
 K lysine              2.2          3           1
 L leucine            10.1         14           2
 M methionine          2.9          4           1
 N asparagine          0.7          1           1
 P proline             8.6         12           1
 Q glutamine           1.4          2           1
 R arginine            9.4         13           2
 S serine             20.1         28           4
 T threonine           4.3          6           1
 V valine              3.6          5           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342666 
LOC100293971          1.000   PREDICTED: hypothetical protein 
LOC100290165          1.000   PREDICTED: hypothetical protein XP_002346834 
TNRC18                0.046   trinucleotide repeat containing 18 
IRS1                  0.034   insulin receptor substrate 1 
LOC100128572          0.034   PREDICTED: hypothetical protein 
LOC100128572          0.034   PREDICTED: hypothetical protein 
LOC100128572          0.034   PREDICTED: hypothetical protein 
LOC146429             0.031   PREDICTED: hypothetical protein LOC146429 isoform 6...
IGFBP7                0.027   insulin-like growth factor binding protein 7 
FARP2                 0.027   FERM, RhoGEF and pleckstrin domain protein 2 
LOC146429             0.027   PREDICTED: hypothetical protein LOC146429 
LOC146429             0.027   PREDICTED: hypothetical protein LOC146429 isoform 1...
LCE1B                 0.027   late cornified envelope 1B 
CECR6                 0.023   cat eye syndrome chromosome region, candidate 6 isof...
LOC100134359          0.023   PREDICTED: hypothetical protein 
XKR4                  0.023   XK, Kell blood group complex subunit-related family,...
ADAM17                0.019   a disintegrin and metalloprotease domain 17 prepropr...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
E2F3                  0.019   E2F transcription factor 3 
ZC3H7B                0.019   zinc finger CCCH-type containing 7B 
TTMA                  0.019   hypothetical protein LOC645369 
KRTAP5-11             0.019   keratin associated protein 5-11 
KRTAP5-8              0.019   keratin associated protein 5-8 
KRTAP5-4              0.019   keratin associated protein 5-4 
C5orf37               0.015   proteome of centriole 5 isoform 1 
C5orf37               0.015   proteome of centriole 5 isoform 2 
HJURP                 0.015   Holliday junction recognition protein 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
LOC100134105          0.015   PREDICTED: similar to hCG1793472 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press