Guide to the Human Genome
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Name: LOC100287516 Sequence: fasta or formatted (243aa) NCBI GI: 239742855
Description:

PREDICTED: hypothetical protein XP_002342663

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         20           2
 C cysteine            1.6          4           1
 D aspartate           2.9          7           1
 E glutamate           4.9         12           1
 F phenylalanine       2.1          5           1
 G glycine             6.6         16           2
 H histidine           3.3          8           1
 I isoleucine          1.6          4           1
 K lysine              3.3          8           1
 L leucine             9.5         23           2
 M methionine          1.2          3           1
 N asparagine          2.5          6           1
 P proline            16.0         39           4
 Q glutamine           3.7          9           1
 R arginine           10.7         26           3
 S serine             10.3         25           2
 T threonine           3.7          9           1
 V valine              4.9         12           1
 W tryptophan          2.1          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342663 
LOC100293810          1.000   PREDICTED: hypothetical protein 
LOC100290021          1.000   PREDICTED: hypothetical protein XP_002346830 
LOC100294261          1.000   PREDICTED: hypothetical protein XP_002344072 
LOC100294247          1.000   PREDICTED: hypothetical protein 
LOC100294212          1.000   PREDICTED: hypothetical protein 
LOC100294134          1.000   PREDICTED: hypothetical protein 
WASL                  0.033   Wiskott-Aldrich syndrome gene-like protein 
RNF111                0.031   ring finger protein 111 
RERE                  0.031   atrophin-1 like protein isoform b 
RERE                  0.031   atrophin-1 like protein isoform a 
RERE                  0.031   atrophin-1 like protein isoform a 
FOXH1                 0.029   forkhead box H1 
GLTSCR1               0.029   glioma tumor suppressor candidate region gene 1 [Ho...
SAMD1                 0.029   sterile alpha motif domain containing 1 
WIPF1                 0.029   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.029   WAS/WASL interacting protein family, member 1 
LOC100130360          0.027   PREDICTED: hypothetical protein 
LOC100292088          0.027   PREDICTED: hypothetical protein XP_002346321 
TNRC18                0.027   trinucleotide repeat containing 18 
PDCD6IP               0.025   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.025   programmed cell death 6 interacting protein isoform ...
BCL9L                 0.025   B-cell CLL/lymphoma 9-like 
YLPM1                 0.025   YLP motif containing 1 
TTN                   0.025   titin isoform N2-A 
TTN                   0.025   titin isoform novex-2 
TTN                   0.025   titin isoform novex-1 
TTN                   0.025   titin isoform N2-B 
COL5A1                0.025   alpha 1 type V collagen preproprotein 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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