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Search of human proteins with 239742778
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo
sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo ... 180 2e-46
gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo ... 180 2e-46
gi|169161340 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 32 0.11
gi|169161633 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 30 0.41
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 30 0.41
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 30 0.41
gi|195947401 doublesex and mab-3 related transcription factor 2 ... 30 0.54
gi|5729806 doublesex and mab-3 related transcription factor 2 is... 30 0.54
gi|153945850 doublesex and mab-3 related transcription factor 2 ... 30 0.54
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens] 29 0.70
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 29 0.70
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 29 0.91
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 29 0.91
gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens] 29 0.91
gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens] 29 0.91
gi|223941923 OTU domain containing 1 [Homo sapiens] 28 1.2
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 1.2
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 28 1.2
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 1.2
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens] 28 1.2
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 28 1.6
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 28 1.6
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 28 1.6
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 28 2.0
gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens] 28 2.0
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 28 2.0
>gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo
sapiens]
Length = 85
Score = 180 bits (456), Expect = 2e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC
Sbjct: 1 MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
Query: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
RPRSQCAGRGTRRSTSSTSPTARCV
Sbjct: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
>gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo
sapiens]
Length = 85
Score = 180 bits (456), Expect = 2e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC
Sbjct: 1 MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
Query: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
RPRSQCAGRGTRRSTSSTSPTARCV
Sbjct: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
>gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQ 65
G+R GG RGP E L+RR R +++ G++PG +C+P
Sbjct: 102 GVRRDVGGHRGPTVEGLERRAQERVPRGTRVG------------GVLPGPRRGSCKPSQT 149
Query: 66 CAG 68
C+G
Sbjct: 150 CSG 152
>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
Length = 638
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 14 KRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAGRGTRR 73
+ GP L+ +PA R + ++GRG+ RD G PG + P + GRG RR
Sbjct: 28 RSGPHLSALRAQPA----RAAHLSGRGTYVRRD-TAGGGPGQARPLGPPGTSLLGRGARR 82
Query: 74 STSSTSPTA 82
S P A
Sbjct: 83 SGEGWCPGA 91
>gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 12 GGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAG 68
GG RGP E L+RR R +++ G ++PG +C+P C+G
Sbjct: 107 GGHRGPTVEGLERRAQERVPRGTRVGG------------VLPGPRRGSCKPSQTCSG 151
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 5 PGLRVLEGGKRGPIYETLK---RRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACR 61
P LR E G+RG + R +P R SQ PR G +PG + R
Sbjct: 164 PSLRAQEAGRRGNAVGGVTGTGSRLHAPGARGSQRPSARGPR------GPLPGLAAWCYR 217
Query: 62 PRSQCAGRGTRRSTSSTSPTAR 83
PR++CA +++ +AR
Sbjct: 218 PRARCAASEPQQTLRGVCDSAR 239
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
+AGR PR R PGA P AACRPR+ AG T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
+AGR PR R PGA P AACRPR+ AG T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
+AGR PR R PGA P AACRPR+ AG T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 21 TLKRRPASPHFRTSQIAGRGSPR------LRDQNLGMIPGASPAACRPRSQCAGRGTRRS 74
T+KRR HF+ +A G P L D L M PGA P+ + CA
Sbjct: 59 TVKRRQEEDHFQFPDMADGGYPNKIKRPCLEDVTLAMGPGAHPS-----TACAELQVPPL 113
Query: 75 TSSTSPTA 82
T + SP A
Sbjct: 114 TINPSPAA 121
>gi|195947401 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 39 RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
RG P+ R + P ASPA PR +C AG G R S T ARC
Sbjct: 81 RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126
>gi|5729806 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 39 RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
RG P+ R + P ASPA PR +C AG G R S T ARC
Sbjct: 81 RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126
>gi|153945850 doublesex and mab-3 related transcription factor 2
isoform 2 [Homo sapiens]
Length = 561
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 39 RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
RG P+ R + P ASPA PR +C AG G R S T ARC
Sbjct: 81 RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126
>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo
sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 36 IAGRGSPRLRDQNLGMIPGASP------AACRPRSQCAGRGTRRSTSSTSPTAR 83
+ GRG+ G G SP AA R +++ GRG RR+T+ + P+ R
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLR 54
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo
sapiens]
Length = 186
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 36 IAGRGSPRLRDQNLGMIPGASP------AACRPRSQCAGRGTRRSTSSTSPTAR 83
+ GRG+ G G SP AA R +++ GRG RR+T+ + P+ R
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLR 54
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 36 IAGRGSPRLRDQNLGMIPGA--SPAACRPRSQCAGRGTRRSTSSTS 79
+ GRGSP R+Q P + +P R R + G GT R ++TS
Sbjct: 171 VTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATS 216
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 36 IAGRGSPRLRDQNLGMIPGA--SPAACRPRSQCAGRGTRRSTSSTS 79
+ GRGSP R+Q P + +P R R + G GT R ++TS
Sbjct: 159 VTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATS 204
>gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens]
Length = 149
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 51 MIPGASPAACRPRSQCAGRGTRRSTSSTSPT 81
++PG P+ R + G+GT R + S+ PT
Sbjct: 6 LLPGPPPSLADFRLEAGGKGTERGSGSSKPT 36
>gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 51 MIPGASPAACRPRSQCAGRGTRRSTSSTSPT 81
++PG P+ R + G+GT R + S+ PT
Sbjct: 6 LLPGPPPSLADFRLEAGGKGTERGSGSSKPT 36
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 26 PASPHFR-TSQIAGR--GSPRLRDQNLGMIPGASPAACRPRSQC 66
P PH+ T+QI R G+ RL +PGA+ +A PR +C
Sbjct: 103 PLPPHYTSTAQITVRALGADRLLLHGPDPVPGAAGSAAAPRGRC 146
>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
G RV E G R + RP +PH S A R S PR R L P RP
Sbjct: 74 GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126
Query: 64 SQCAGRG 70
GRG
Sbjct: 127 GSGPGRG 133
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 30 HFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAGRGTRRSTSSTS 79
H +S + G+ P++ N+ +P P+A P + A R++ SS +
Sbjct: 228 HSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASSVT 277
>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
G RV E G R + RP +PH S A R S PR R L P RP
Sbjct: 74 GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126
Query: 64 SQCAGRG 70
GRG
Sbjct: 127 GSGPGRG 133
>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 6 GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
G RV E G R + RP +PH S A R S PR R L P RP
Sbjct: 74 GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126
Query: 64 SQCAGRG 70
GRG
Sbjct: 127 GSGPGRG 133
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 53 PGASPAACRPRSQCAGRGTRRSTSSTSPTA 82
PG +PA+ RP S C G RR +SS +P++
Sbjct: 316 PGPTPASPRPASPC---GKRRYSSSGTPSS 342
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo
sapiens]
Length = 326
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 13 GKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMI---PGASPAACRPRSQCAGR 69
G GP +L +SP TS++ GR + + ++ G + PG +P A R
Sbjct: 33 GSSGPW--SLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPR-------L 83
Query: 70 GTRRSTSSTSPTA 82
G S S TSPTA
Sbjct: 84 GPELSPSPTSPTA 96
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 53 PGASPAACRPRSQCAGRGTRRSTSSTSPTA 82
PG +PA+ RP S C G RR +SS +P++
Sbjct: 253 PGPTPASPRPASPC---GKRRYSSSGTPSS 279
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 13 GKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
G RGP++ L A PH +++ GR + PG P RP + G
Sbjct: 126 GPRGPLFPALLAALARPH--GAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHA 183
Query: 72 RRSTSS--TSPTA 82
R S+ SPT+
Sbjct: 184 HRGGSAWKRSPTS 196
>gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens]
Length = 562
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 37 AGRGSPRLRDQNLGMIPGASPAACRP 62
+ G+PRLR + G +P ASP P
Sbjct: 131 SAHGAPRLRQRRQGPLPRASPGRANP 156
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 8 RVLEGG-----KRGPIYETLKRRPAS-----------PHFRTSQIAGRGSPRLRDQNLGM 51
R+L GG R P +E+ +RRPAS P R S+++ G P R +
Sbjct: 129 RLLPGGGRLRSPRDPAWESGRRRPASGVRVESGVLPVPGPRGSRLSKLGGPHARSPHGNR 188
Query: 52 IPGASPAACR 61
+P A A R
Sbjct: 189 VPQARSPALR 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,986,419
Number of Sequences: 37866
Number of extensions: 194462
Number of successful extensions: 738
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 61
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.