Guide to the Human Genome
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Name: LOC100287475 Sequence: fasta or formatted (197aa) NCBI GI: 239741616
Description:

PREDICTED: hypothetical protein XP_002342249

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         23           4
 C cysteine            0.5          1           1
 D aspartate           2.0          4           1
 E glutamate           5.1         10           2
 F phenylalanine       3.0          6           2
 G glycine             5.6         11           1
 H histidine           3.0          6           1
 I isoleucine          1.0          2           1
 K lysine              2.0          4           1
 L leucine            11.7         23           3
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            11.2         22           3
 Q glutamine           5.1         10           1
 R arginine            9.1         18           2
 S serine              9.6         19           3
 T threonine           5.6         11           1
 V valine              9.1         18           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342249 
LOC100292536          1.000   PREDICTED: similar to zinc finger protein 607 [Homo...
LOC100291157          1.000   PREDICTED: hypothetical protein XP_002348259 
LOC100288686          0.477   PREDICTED: hypothetical protein XP_002342615 
ZNF607                0.103   zinc finger protein 607 
ZNF540                0.065   zinc finger protein 540 
ZNF302                0.065   zinc finger protein 302 
ZNF302                0.065   zinc finger protein 302 
ZFP82                 0.065   zinc finger protein 82 homolog 
ZNF570                0.062   zinc finger protein 570 
LOC100129800          0.062   PREDICTED: similar to zinc finger protein 181 [Homo...
ZNF484                0.062   zinc finger protein 484 isoform a 
ZNF461                0.062   gonadotropin inducible transcription repressor 1 [Ho...
ZNF727                0.060   zinc finger protein 727 
ZNF420                0.060   zinc finger protein 420 
LOC100294071          0.060   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100129800          0.060   PREDICTED: similar to zinc finger protein 181 [Homo...
ZNF181                0.060   zinc finger protein 181 isoform 2 
ZNF571                0.060   zinc finger protein 571 
ZNF182                0.060   zinc finger protein 21 isoform 2 
ZNF182                0.060   zinc finger protein 21 isoform 1 
ZNF544                0.060   zinc finger protein 544 
ZFP14                 0.060   zinc finger protein 14-like 
ZNF81                 0.060   zinc finger protein 81 
ZNF606                0.060   zinc finger protein 606 
ZNF529                0.057   zinc finger protein 529 isoform b 
ZNF529                0.057   zinc finger protein 529 isoform a 
ZNF529                0.057   zinc finger protein 529 isoform a 
LOC654254             0.057   zinc finger protein LOC654254 
DKFZp686E2433         0.057   hypothetical protein LOC345462 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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