Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 570 e-163
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 570 e-163
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 570 e-163
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.005
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 39 0.006
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 39 0.006
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 37 0.014
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 37 0.024
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 37 0.024
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 36 0.032
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 36 0.032
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 36 0.032
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 36 0.032
gi|62177129 Nedd4 binding protein 3 [Homo sapiens] 36 0.032
gi|30181233 leucine-rich repeats and calponin homology (CH) doma... 36 0.032
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 35 0.071
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.071
gi|7662162 ALEX2 protein [Homo sapiens] 35 0.071
gi|29540562 ALEX2 protein [Homo sapiens] 35 0.071
gi|88758580 cyclin L2 isoform A [Homo sapiens] 34 0.12
gi|195947369 junction-mediating and regulatory protein [Homo sap... 34 0.12
gi|33239445 eukaryotic translation initiation factor 3, subunit ... 34 0.12
gi|83367072 eukaryotic translation initiation factor 3, subunit ... 34 0.12
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 34 0.12
gi|239757419 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|239751936 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 570 bits (1469), Expect = e-163
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
Query: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 570 bits (1469), Expect = e-163
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
Query: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 570 bits (1469), Expect = e-163
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR
Sbjct: 1 MARGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLR 60
Query: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ
Sbjct: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQ 120
Query: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI
Sbjct: 121 EERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCI 180
Query: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV
Sbjct: 181 PTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQSQLV 240
Query: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT
Sbjct: 241 AASDLEPWTPHSPHSALCHFLPHLLSIWPSRRGT 274
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.9 bits (89), Expect = 0.005
Identities = 56/241 (23%), Positives = 90/241 (37%), Gaps = 50/241 (20%)
Query: 17 PTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKT---------EPGL-------- 59
P+ S S SPG PR + + E P P LP+T P L
Sbjct: 1454 PSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQ 1513
Query: 60 --RGGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLS----EAAERKRCPEGRGRRDRPM 113
R G + SV Q+ A + +R+ GS+ + K S E +E P+ + + P+
Sbjct: 1514 RERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPL 1573
Query: 114 EVRIQQ----QEERRQELEPQEGGPPGAAEEAD-PRLADSTGTGR-----------LCLL 157
R + + + + L P+ + E D PR A +G L
Sbjct: 1574 RQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALP 1633
Query: 158 QKSLLGSPSR---PLPQQDAGIRLCIPTAHKGQRMPLYRIRAARQFSLHDPPPRSDMESD 214
++S GS S+ P P+ + T + P + R AR+ S P P++ +
Sbjct: 1634 RRSRSGSSSKGRGPSPEGSSS------TESSPEHPP--KSRTARRGSRSSPEPKTKSRTP 1685
Query: 215 P 215
P
Sbjct: 1686 P 1686
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 38.5 bits (88), Expect = 0.006
Identities = 35/102 (34%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
PPC P+ A P +W PG +PTP + G R P EPG R R
Sbjct: 401 PPCARPSGAGPAREGPAAW--PGGAPTPPHARPT----GRRQDP------EPGPRAPRGG 448
Query: 66 SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRG 107
W A SAA R G GG A R+R GRG
Sbjct: 449 PASSGWHAGSAAGRGWDPG--GGSRA-------RRRAARGRG 481
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 38.5 bits (88), Expect = 0.006
Identities = 35/102 (34%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
PPC P+ A P +W PG +PTP + G R P EPG R R
Sbjct: 401 PPCARPSGAGPAREGPAAW--PGGAPTPPHARPT----GRRQDP------EPGPRAPRGG 448
Query: 66 SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRG 107
W A SAA R G GG A R+R GRG
Sbjct: 449 PASSGWHAGSAAGRGWDPG--GGSRA-------RRRAARGRG 481
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 37.4 bits (85), Expect = 0.014
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 57 PGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK-LSEAA---ERKRCPEGRGRRDRP 112
PG ++ ++ E+ RR L+ A E + L E A ER+R E GR
Sbjct: 298 PGWEDAERREREERERLEAEEERRRLQAQAQAEERRRLEEDARLEERRRQEEEEGRCAEE 357
Query: 113 MEVRIQQQEERRQELEPQEG---GPPGAAEEADPRLADSTGTGR 153
++ + +++ E +ELE QE GPP A EE TG GR
Sbjct: 358 LKRQEEEEAEGWEELEQQEAEVQGPPEALEE--------TGEGR 393
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 36.6 bits (83), Expect = 0.024
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 13/142 (9%)
Query: 11 PTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQ 70
P A PP GL+ GS G P V S P + + +T G R R+K + +
Sbjct: 65 PPRASPPGGLAEPPGSAGPQAGPTVVPGSAT-----PMETGIAETPEGRRTSRRKRAKVE 119
Query: 71 WWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQ 130
+ + E E + ++A + K+ P P + +EE E E
Sbjct: 120 YREMDESLANLSEDEYYSEEERNAKAEKEKKLP--------PPPPQAPPEEENESEPEEP 171
Query: 131 EGGPPGAAEEADPRLADSTGTG 152
G G +++ D +G
Sbjct: 172 SGQAGGLQDDSSGGYGDGQASG 193
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 36.6 bits (83), Expect = 0.024
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 117 IQQQEERRQELEPQEGGPPGAAEEAD-------PRLADSTGTGRLCLLQKSL-----LGS 164
+ +++ R E EP GPPGAA + PR A + G L + + + LG
Sbjct: 78 VLRKKPRPPEPEPAPFGPPGAAAQPSKPTSTVLPRSASAPGAPPLVRVPRPVEPPGDLGL 137
Query: 165 PSRPLPQQDAGIRLCIPTAHKGQR-----MPLYRIRAARQFSLHD--PPPRSDMESDPCC 217
P+ PQ G P G+R +P + A + D PPPR+ E+ C
Sbjct: 138 PTE--PQDTPGGPASEPAQPPGERSADPPLPALELAQATERPSADAAPPPRAPSEAASPC 195
Query: 218 SRGGAASAQRGEATRPRSQ 236
S A G A P Q
Sbjct: 196 SDPPDAEPGPGAAKGPPQQ 214
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 36.2 bits (82), Expect = 0.032
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 75 SAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPM---EVRIQQQEERRQELEPQE 131
+AA+ G GGGE + E E+ + +G +D+P+ +V+ ++EE+ + EP +
Sbjct: 2 AAAAAAAPSGGGGGGEEERLE--EKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQ 59
Query: 132 GGPPGAAEEADPRLAD-STGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPTAHKGQRMP 190
+AE A+ A+ S G+G + ++ R +D G PT +G
Sbjct: 60 PSAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRK 119
Query: 191 LYRIRAARQFSLHD 204
L + ++ R +D
Sbjct: 120 LKQRKSGRSAGKYD 133
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 36.2 bits (82), Expect = 0.032
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 33 PRAVTASQVELGLRPG-PSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEA 91
P+ V QV P P L T P L G K S Q +ES+ + E SAGGG
Sbjct: 1011 PQLVGRFQVTSSKEPAEPLPLQPTSPTLSGSPKPST-PQLTSESSDT----EDSAGGGPE 1065
Query: 92 KLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEADP 143
AE R EG G +EE EPQ GG P P
Sbjct: 1066 TREALAESDRAAEGLG---------AGVEEEGDDGKEPQVGGSPQPLSHPSP 1108
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 36.2 bits (82), Expect = 0.032
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 9 GTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPK--TEPGLRGGRKKS 66
G +P G+S + G+ G P + E P PS P+ TEP LR R S
Sbjct: 49 GRRAQRRPGPGVS-AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALR--RPSS 105
Query: 67 VRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQE 126
+ ++S G A G A S +++ P GR R R E + +E+R +
Sbjct: 106 ADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 163
Query: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLC 179
L + P E+A TGT G R + AG+R C
Sbjct: 164 LLEEGSAQPDDGEDAPRPGRKETGT---------QTGGDGRGVSDAGAGVRGC 207
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 36.2 bits (82), Expect = 0.032
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 9 GTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPK--TEPGLRGGRKKS 66
G +P G+S + G+ G P + E P PS P+ TEP LR R S
Sbjct: 152 GRRAQRRPGPGVS-AVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALR--RPSS 208
Query: 67 VRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQE 126
+ ++S G A G A S +++ P GR R R E + +E+R +
Sbjct: 209 ADRPLAPGPSSSPGA--GRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRL 266
Query: 127 LEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLC 179
L + P E+A TGT G R + AG+R C
Sbjct: 267 LLEEGSAQPDDGEDAPRPGRKETGT---------QTGGDGRGVSDAGAGVRGC 310
>gi|62177129 Nedd4 binding protein 3 [Homo sapiens]
Length = 544
Score = 36.2 bits (82), Expect = 0.032
Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
PP +PP FS S T +++ GL P T+
Sbjct: 234 PPAVLSCLPEPPPPYEFSCSSAEEMGAVLPETCEELKRGLGDEDGSNPFTQV-------L 286
Query: 66 SVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERR- 124
RQ+ W + R +E +L E ++ R R+ +++ + QQE+RR
Sbjct: 287 EERQRLWL-AELKRLYVE--------RLHEVTQKAE----RSERNLQLQLFMAQQEQRRL 333
Query: 125 -QELEPQEG-----GPPGAAEEADP--------RLADSTGTGRLCLLQKSLLGSPSRPLP 170
+EL Q+G PG EADP R T + LL++ L + + L
Sbjct: 334 RKELRAQQGLAPEPRAPGTLPEADPSARPEEEARWEVCQKTAEISLLKQQLREAQAE-LA 392
Query: 171 QQDAGIRLCIPTAHKGQR-------MPLYRIRAARQFSLHDPPPRSD----MESDPCCSR 219
Q+ A I + T +G R L R+R A + SL + PR + E+D C SR
Sbjct: 393 QKLAEI-FSLKTQLRGSRAQAQAQDAELVRLREAVR-SLQEQAPREEAPGSCETDDCKSR 450
Query: 220 GGAASAQRGEA 230
G A EA
Sbjct: 451 GLLGEAGGSEA 461
>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
containing 4 [Homo sapiens]
Length = 683
Score = 36.2 bits (82), Expect = 0.032
Identities = 42/172 (24%), Positives = 63/172 (36%), Gaps = 10/172 (5%)
Query: 79 RRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAA 138
+R E S G G+ + + ++ R+ P G RR RP +++ Q+ ERRQ+ + G P
Sbjct: 374 QRPPELSPGAGDRERAPSSRREE-PAGEERR-RPDTLQLWQERERRQQQQSGAWGAPRKD 431
Query: 139 EEADPRLADSTGTGRLCLLQKSLLGSPSRPLPQQDAGIRLCIPTAHKGQRMPLYRIRAAR 198
P L G Q GSP Q A P + PL A
Sbjct: 432 SLLKPGLRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPASQEPL---PIAG 488
Query: 199 QFSLHDPPPRSDMESD-----PCCSRGGAASAQRGEATRPRSQSQLVAASDL 245
+ P P ++ S+ G+ + RPR Q+ DL
Sbjct: 489 PATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDL 540
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 35.8 bits (81), Expect = 0.041
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 47 PGPSDLPK--TEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
P PS P+ TEP LR + S ++ A++ +S ++ G A G A S ++E P
Sbjct: 87 PMPSSAPRGPTEPALR---RPSSAERPLAQAPSSSASV-GRAPGAMASPSRSSEATGKPR 142
Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEADPRLADSTGTGRLCLLQKSLLGS 164
GR R R E + +E+R + L P E+ + D+ GR + + G
Sbjct: 143 GRDGRPRREEDDVPPEEKRLRLLLEGGSAQPQDGEDGE----DAPRPGR--VETGTQTGG 196
Query: 165 PSRPLPQQDAGIRLC 179
R + AG+R C
Sbjct: 197 DGRGVSDAGAGVRGC 211
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 35.0 bits (79), Expect = 0.071
Identities = 42/167 (25%), Positives = 61/167 (36%), Gaps = 21/167 (12%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTA-----SQVELGLRPGPSDLPKTEPGLR 60
PP P AQPP LS G P +P P A A + + +DL + G
Sbjct: 1763 PPSVAPRQAQPPQSLSL--GRPRQAPVPPASHAPASRSASLSRAFSLASADLLRAS-GPE 1819
Query: 61 GGRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCP---------EGRGRRDR 111
+++S ++ E+ R T + S + R+R P +G G R R
Sbjct: 1820 ACKQESPQKLGAPEALGGRETGSHTLQSPAPPSSHSLARERTPLVGKAGSSCQGPGPRSR 1879
Query: 112 PMEVR----IQQQEERRQELEPQEGGPPGAAEEADPRLADSTGTGRL 154
P++ R +EER L P A A A S +L
Sbjct: 1880 PLDTRRFSLAPPKEERLAPLHQSATAPAIATAGAGAAAAGSGSNSQL 1926
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.0 bits (79), Expect = 0.071
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 6 PPCGTPT--SAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGG 62
PP G PT +A PP+ GSPGT P A T V G LP T P +GG
Sbjct: 1305 PPKGAPTPPAATPPSPK----GSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG 1359
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 35.0 bits (79), Expect = 0.071
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
P TPT A PTG + SPGTS +PR PG S K PG G
Sbjct: 221 PVPATPTGAAAPTGAA---ESPGTSGSPRTAVV--------PGTSAAKKATPGAHTGAIP 269
Query: 66 SVRQQWWAESAASRRTLEGSAGGGEAK 92
A + + S GG+ K
Sbjct: 270 KATSATGAVPKGGGKGVTRSRNGGKGK 296
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 35.0 bits (79), Expect = 0.071
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 6 PPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKK 65
P TPT A PTG + SPGTS +PR PG S K PG G
Sbjct: 221 PVPATPTGAAAPTGAA---ESPGTSGSPRTAVV--------PGTSAAKKATPGAHTGAIP 269
Query: 66 SVRQQWWAESAASRRTLEGSAGGGEAK 92
A + + S GG+ K
Sbjct: 270 KATSATGAVPKGGGKGVTRSRNGGKGK 296
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 34.3 bits (77), Expect = 0.12
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 25/121 (20%)
Query: 17 PTGLSFSWGSPGTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSV--------- 67
P G G+ G SP P+ V + + G +P P + T+ L G +K
Sbjct: 317 PGGTQVLDGTSGFSPAPKLVESPKEGKGSKPSPLSVKNTKRRLEGAKKAKADSPVNGLPK 376
Query: 68 ----------RQQWWAESAA------SRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDR 111
R+Q ++ S + R++ GS GG S + R P + R
Sbjct: 377 GRESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDSPPRQAPRSA 436
Query: 112 P 112
P
Sbjct: 437 P 437
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 34.3 bits (77), Expect = 0.12
Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 34/205 (16%)
Query: 80 RTLEGSAGGGEA--KLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGA 137
R G+ GG EA S+ + P GRGR + + + R+ EGG P +
Sbjct: 59 REQAGARGGAEAGGAASDGSRGPGSPAGRGRPEATASATLVRSPGPRRSSAWAEGGSPRS 118
Query: 138 AEE--ADPRLADSTGTGRLCLLQKSLLGSP-------------------SRPLPQ--QDA 174
DPRL G L+ + P +RP P+ Q +
Sbjct: 119 TRSLLGDPRLRSPGSKGAESRLRSPVRAKPIPGQKTSEADDAAGAAAAAARPAPREAQVS 178
Query: 175 GIRLCIPTAHKGQRMPLYRIRAARQFSL-----HDPPPRSDMESD-PCCSRGGAASAQRG 228
+R+ + + + + + + L PPP +++ES CS G S Q
Sbjct: 179 SVRIVSASGTVSEEIEVLEMVKEDEAPLALSDAEQPPPATELESPAEECSWAGLFSFQDL 238
Query: 229 EATRPRSQSQLVAASDLEPWTPHSP 253
A Q S LEP P P
Sbjct: 239 RAVH---QQLCSVNSQLEPCLPVFP 260
>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 34.3 bits (77), Expect = 0.12
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 28/185 (15%)
Query: 3 RGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGL-RPGPSDLPKTEPGLRG 61
R P P + PP PG +P AS E+G+ GP +TEP
Sbjct: 16 RAEPGQQQPAAEPPPAEGLLRPAGPG-APEAAGTEASSEEVGIAEAGPESEVRTEPAAEA 74
Query: 62 GRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQE 121
AAS + S E AE +G + + R ++ +
Sbjct: 75 -------------EAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGE---QARDERSD 118
Query: 122 ERRQELEPQEGGPPGAAEEADPRLADSTGTGRLC----------LLQKSLLGSPSRPLPQ 171
R Q + GG G A EA+PR ++ + ++ LLG + PQ
Sbjct: 119 SRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQ 178
Query: 172 QDAGI 176
+ GI
Sbjct: 179 EADGI 183
>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 34.3 bits (77), Expect = 0.12
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 28/185 (15%)
Query: 3 RGHPPCGTPTSAQPPTGLSFSWGSPGTSPTPRAVTASQVELGL-RPGPSDLPKTEPGLRG 61
R P P + PP PG +P AS E+G+ GP +TEP
Sbjct: 16 RAEPGQQQPAAEPPPAEGLLRPAGPG-APEAAGTEASSEEVGIAEAGPESEVRTEPAAEA 74
Query: 62 GRKKSVRQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQE 121
AAS + S E AE +G + + R ++ +
Sbjct: 75 -------------EAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGE---QARDERSD 118
Query: 122 ERRQELEPQEGGPPGAAEEADPRLADSTGTGRLC----------LLQKSLLGSPSRPLPQ 171
R Q + GG G A EA+PR ++ + ++ LLG + PQ
Sbjct: 119 SRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQ 178
Query: 172 QDAGI 176
+ GI
Sbjct: 179 EADGI 183
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 34.3 bits (77), Expect = 0.12
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 28 GTSPTPRAVTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAG 87
G +P P+ L RPG EPG GG + EGS G
Sbjct: 9 GVAPGPQGPPEVPAPLAERPG-------EPGAAGGEAEGP---------------EGSEG 46
Query: 88 GGEAKLSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGA 137
EA AA ++ G G DR E + E E +EG P GA
Sbjct: 47 AEEAPRGAAAVKEA---GGGGPDRGPEAEARGTRGAHGETEAEEGAPEGA 93
Score = 33.1 bits (74), Expect = 0.27
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 25 GSPGTSPTPRAVTASQVELGLRPGPSDLPKTEP-GLRGGRKKSVRQQWWAESAASRRTLE 83
GS G PR A + G GP P+ E G RG ++ ++ E A + E
Sbjct: 43 GSEGAEEAPRGAAAVKEAGG--GGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGE 100
Query: 84 GSAGGGEAK-LSEAAERKRCPEGRGRRDRPMEVRIQQQEERRQELEPQEGGPPGAAEEA 141
++G + + S + P G +R+ ++QEE Q E EG G A ++
Sbjct: 101 ETSGAQQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSASGEAGDS 159
>gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 33.9 bits (76), Expect = 0.16
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 36 VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
V AS + LG P P+ LP+ P G R++ +R +W E S R S G K
Sbjct: 106 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 162
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.16
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 3 RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
RG P G P SA P G L+ PG + PR + GL
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 47 PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
PG S + G + R+ R W A SRR G+ G +A +
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
G+G+R E + R L GG PPG + E
Sbjct: 241 GKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPGWSRE 278
>gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 33.9 bits (76), Expect = 0.16
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 36 VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
V AS + LG P P+ LP+ P G R++ +R +W E S R S G K
Sbjct: 139 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 195
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.16
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 3 RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
RG P G P SA P G L+ PG + PR + GL
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 47 PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
PG S + G + R+ R W A SRR G+ G +A +
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
G+G+R E + R L GG PPG + E
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.16
Identities = 42/158 (26%), Positives = 55/158 (34%), Gaps = 20/158 (12%)
Query: 3 RGHPPCG--TPTSAQPPTG------LSFSWGSPGTSPTPRAVTASQVE--------LGLR 46
RG P G P SA P G L+ PG + PR + GL
Sbjct: 121 RGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLN 180
Query: 47 PGPSDLPKTEPGLRGGRKKSV--RQQWWAESAASRRTLEGSAGGGEAKLSEAAERKRCPE 104
PG S + G + R+ R W A SRR G+ G +A +
Sbjct: 181 PGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASG 240
Query: 105 GRGRRDRPMEVRIQQQEERRQELEPQEGG--PPGAAEE 140
G+G+R E + R L GG PPG + E
Sbjct: 241 GKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPGWSRE 278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,579,595
Number of Sequences: 37866
Number of extensions: 859580
Number of successful extensions: 4591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 4279
Number of HSP's gapped (non-prelim): 583
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.