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Search of human proteins with 239742531
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens]
(353 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens] 739 0.0
gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens] 739 0.0
gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens] 734 0.0
gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo s... 189 3e-48
gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precurs... 189 3e-48
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 5e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 8e-04
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 42 0.001
gi|55750053 atrophin-1 [Homo sapiens] 41 0.001
gi|55750041 atrophin-1 [Homo sapiens] 41 0.001
gi|55741677 SET domain containing 1A [Homo sapiens] 40 0.002
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 40 0.002
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 40 0.002
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 40 0.002
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 40 0.002
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 39 0.007
gi|24431933 reticulon 4 isoform B [Homo sapiens] 39 0.007
gi|47519490 reticulon 4 isoform D [Homo sapiens] 39 0.007
gi|24431935 reticulon 4 isoform A [Homo sapiens] 39 0.007
gi|22027646 angiomotin like 1 [Homo sapiens] 39 0.007
gi|163965366 nascent polypeptide-associated complex alpha subuni... 39 0.007
gi|58530845 zyxin [Homo sapiens] 39 0.009
gi|4508047 zyxin [Homo sapiens] 39 0.009
gi|56711322 ring finger protein 43 [Homo sapiens] 38 0.016
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 37 0.020
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 37 0.020
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|146134388 YLP motif containing 1 [Homo sapiens] 37 0.027
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 37 0.035
>gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 739 bits (1908), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP
Sbjct: 1 MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
Query: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY
Sbjct: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
Query: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV
Sbjct: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
Query: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV
Sbjct: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
Query: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS
Sbjct: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
Query: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
>gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 739 bits (1908), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP
Sbjct: 1 MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
Query: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY
Sbjct: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
Query: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV
Sbjct: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
Query: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV
Sbjct: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
Query: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS
Sbjct: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
Query: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
>gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 734 bits (1896), Expect = 0.0
Identities = 351/353 (99%), Positives = 352/353 (99%)
Query: 1 MTPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
MTPYDSRCPPKLQISAPAQL PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP
Sbjct: 1 MTPYDSRCPPKLQISAPAQLSPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSP 60
Query: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY
Sbjct: 61 PKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
Query: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV
Sbjct: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPV 180
Query: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEK+LEVWFSWQQPNANQGSGDLRTIPRSEKV
Sbjct: 181 TKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKQLEVWFSWQQPNANQGSGDLRTIPRSEKV 240
Query: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS
Sbjct: 241 ISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYGYS 300
Query: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 301 MNGMKSDGTYWTIHITPEPESFYKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
>gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo
sapiens]
Length = 186
Score = 189 bits (480), Expect = 3e-48
Identities = 104/163 (63%), Positives = 107/163 (65%), Gaps = 48/163 (29%)
Query: 239 KVISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYG 298
+VISQPDQTLE LMS LDPAVMDQFYMKDGVTAKDV ESGI +LIPGSVI+ATMFNP G
Sbjct: 20 RVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG 79
Query: 299 YSMNGMKSDGTYWTIHITPEPESFY----------------------------------- 323
YSMNGMKSDGTYWTIHITPEPE Y
Sbjct: 80 YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVN 139
Query: 324 -------------KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 140 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 182
>gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 189 bits (480), Expect = 3e-48
Identities = 104/163 (63%), Positives = 107/163 (65%), Gaps = 48/163 (29%)
Query: 239 KVISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYG 298
+VISQPDQTLE LMS LDPAVMDQFYMKDGVTAKDV ESGI +LIPGSVI+ATMFNP G
Sbjct: 168 RVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG 227
Query: 299 YSMNGMKSDGTYWTIHITPEPESFY----------------------------------- 323
YSMNGMKSDGTYWTIHITPEPE Y
Sbjct: 228 YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVN 287
Query: 324 -------------KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353
KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 288 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 330
Score = 72.0 bits (175), Expect = 8e-13
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 200 MEAVHFSEGTEKRLEVWFSWQQPNANQGSGDLRTIPRSE 238
MEA HF EGTEK LEVWFS QQP+ANQGSGDLRTIPRSE
Sbjct: 1 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSE 39
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 3e-04
Identities = 53/184 (28%), Positives = 64/184 (34%), Gaps = 19/184 (10%)
Query: 3 PYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAH---SLRHRPSRRRERDTKRHGASS 59
P S P L+ + L P SL + PP SL P + +
Sbjct: 503 PLSSLIMPPLETQS--SLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLET 560
Query: 60 PPKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKAS 119
PP PA C P T P S+ PP P A P Q S PLS A+
Sbjct: 561 PPCPAPCPLQAPPSPLTTPPPETPSSIAT--PPPQAPPALASPPLQGLPS--PPLSPLAT 616
Query: 120 YPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASP--CQSNLVPNA-AAEVFRDTFASPL 176
P QA P L+ P PP P SP S PNA A + + F+ P
Sbjct: 617 PPP-------QAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPP 669
Query: 177 EEPV 180
PV
Sbjct: 670 SPPV 673
Score = 39.7 bits (91), Expect = 0.004
Identities = 44/160 (27%), Positives = 55/160 (34%), Gaps = 23/160 (14%)
Query: 1 MTPYDSRCPPKLQ-ISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASS 59
+ P PP LQ + +P PP P S T P SL+ P + +
Sbjct: 343 LAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQA 402
Query: 60 PPKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKAS 119
PP P A A T+ +P T H SP Q S +P ++
Sbjct: 403 PPSPLALSSLQA----TTSLGSPTLQAT--------HSFLTMSPRQTQASLTSPSRPAST 450
Query: 120 YPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNL 159
P P PL L L PA PP S SP S L
Sbjct: 451 PPDSP--------PLQAPLSL--PASPPLQTSLSPAVSPL 480
Score = 38.9 bits (89), Expect = 0.007
Identities = 49/172 (28%), Positives = 62/172 (36%), Gaps = 34/172 (19%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQ----FPNPPAHSLRHRPSRRRERDTKRHGASSPPKPA 64
PP S+ A PP + P+ + P+PP L P + + PP A
Sbjct: 579 PPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPX------LALPPLQA 632
Query: 65 ACGHPNAPCARDTADPAPLCS-------LTAFFPPGPLHPIAARSPNQKATSRNAPLSSK 117
P +P A P+P L A F P P P+ AP S
Sbjct: 633 PPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV------------QAPFSPP 680
Query: 118 ASYPQGPFHSR-GQAKPLCLCLGLR----PPAQPPRFPSASPCQSNLVPNAA 164
AS P P + QA P L+ PPA PP PSA+P P AA
Sbjct: 681 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA 732
Score = 37.4 bits (85), Expect = 0.020
Identities = 54/174 (31%), Positives = 63/174 (36%), Gaps = 24/174 (13%)
Query: 2 TPYDSRCPPKLQISAPAQLPPHSLPS---SGTQFPNPPAHSLRHRPSRRRERDTKRHGAS 58
TP PP A A P LPS S P P A P + AS
Sbjct: 583 TPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPP---AS 639
Query: 59 SPPKPAACGHPNAPCA------RDTADPAPLCSLTAFFPPGPLHPIA--ARSPNQKATSR 110
P P A P AP A + P P + A F P P++ A P+Q S
Sbjct: 640 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSL 699
Query: 111 NAPL-----SSKASYPQGPFHSRG-QAKPLCLCLGLR----PPAQPPRFPSASP 154
AP S AS P P + QA P L+ PPA PP PSA+P
Sbjct: 700 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATP 753
Score = 34.3 bits (77), Expect = 0.17
Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 26/149 (17%)
Query: 7 RCPPKLQISAPAQLPPH---SLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKP 63
+ PP L + P Q+PP S P S + P P L P + AS P P
Sbjct: 725 QAPPPLA-APPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPP---ASLPMSP 780
Query: 64 AACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQG 123
A P AP A T L S A FP AP S AS P
Sbjct: 781 LAKPPPQAPPALATPPLQALPSPPASFP------------------GQAPFSPSASLPMS 822
Query: 124 PFHS-RGQAKPLCLCLGLRPPAQPPRFPS 151
P + QA P+ L+ P PP P+
Sbjct: 823 PLATPPPQAPPVLAAPLLQVPPSPPASPT 851
Score = 33.9 bits (76), Expect = 0.23
Identities = 48/197 (24%), Positives = 66/197 (33%), Gaps = 24/197 (12%)
Query: 16 APAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAAC------GHP 69
AP L H L + + P+PP + P+ + + +PP AA P
Sbjct: 652 APNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPP 711
Query: 70 NAPCARDTADPAPLCSLTAFFPP----------GPLHPIAARSPN----QKATSRNAPLS 115
+P +A P P PP P+ P A P A P S
Sbjct: 712 ASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPS 771
Query: 116 SKASYPQGPFHSRGQAKPLCLCLGLRPPAQP-PRFPSASPCQSNLVPNAAAEVFRDTFAS 174
AS P P P L PP Q P P++ P Q+ P+A+ +
Sbjct: 772 PPASLPMSPLAKPPPQAPPALA---TPPLQALPSPPASFPGQAPFSPSASLPMSPLATPP 828
Query: 175 PLEEPVTKRDVLSGVPS 191
P PV +L PS
Sbjct: 829 PQAPPVLAAPLLQVPPS 845
Score = 32.0 bits (71), Expect = 0.86
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 22 PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPA 81
P PS+ P PP R S E T ++ +P+A G P +R + A
Sbjct: 190 PRPAPSAR---PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSA 246
Query: 82 -PLCS------LTAFFPPGPLHPIAARSPNQKA--TSRNAPLSSKASYPQGPFHSRGQAK 132
PL S P P HP + +A + P A+ GP S A
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 306
Query: 133 PLCLCLGLRPPAQPPRFPSASPCQSNLVPN 162
P RP PP +A+P + L P+
Sbjct: 307 PSPSGTKARP--VPPPDNAATPLPATLPPS 334
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 42.7 bits (99), Expect = 5e-04
Identities = 57/193 (29%), Positives = 72/193 (37%), Gaps = 37/193 (19%)
Query: 2 TPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRE-------RDTKR 54
TP+ S +L P P S P S P+PPA PS+ + T
Sbjct: 324 TPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATP----PSQATTSLGSPTLQATHS 379
Query: 55 HGASSPPKPAACGHPNAPCARD----TADPAPLCSLTAFFPPGPLHPIAARSPNQKATS- 109
S P P A P AP A A P+P S P PL + ++PN A
Sbjct: 380 FLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASP----PLSPLATPSPQAPNALAVHL 435
Query: 110 RNAPLSSKASYP-QGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVF 168
AP S S P Q PF PPA PP PSA+P S P+ AA
Sbjct: 436 LQAPFSPPPSPPVQAPF---------------SPPASPPVSPSATP-PSQAPPSLAAPPL 479
Query: 169 RDTFASPLEEPVT 181
+ + P P++
Sbjct: 480 QVPPSPPASPPMS 492
Score = 42.7 bits (99), Expect = 5e-04
Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 41/213 (19%)
Query: 1 MTPYDSRCPPKLQI--SAPAQLPPHSLPSSGTQ--------FPNPPAHSLRHRPSRRRER 50
+ P PP LQ S PA P + S G+ P+PP L P +
Sbjct: 340 LAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP- 398
Query: 51 DTKRHGASSPPKPAACGHPNAPCARDTADPAPLCS-------LTAFFPPGPLHPIAARSP 103
+ PP A P +P A P+P L A F P P P+
Sbjct: 399 -----ALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV----- 448
Query: 104 NQKATSRNAPLSSKASYPQGPFHSR-GQAKPLCLCLGLR----PPAQPPRFPSASPCQSN 158
AP S AS P P + QA P L+ PPA PP PSA+P
Sbjct: 449 -------QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-PPQ 500
Query: 159 LVPNAAAEVFRDTFASPLEEPVTKRDVLSGVPS 191
P AA + P P L +PS
Sbjct: 501 APPPLAAPPLQLAKPPPQAPPALATPPLQALPS 533
Score = 32.3 bits (72), Expect = 0.66
Identities = 46/189 (24%), Positives = 64/189 (33%), Gaps = 20/189 (10%)
Query: 22 PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPA 81
P PS+ P PP R S E T ++ +P+A G P +R + A
Sbjct: 190 PRPAPSAR---PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSA 246
Query: 82 -PLCS------LTAFFPPGPLHPIAARSPNQKA--TSRNAPLSSKASYPQGPFHSRGQAK 132
PL S P P HP + +A + P A+ GP S A
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 306
Query: 133 PL-CLCLGLRPPAQPPRFPSASPCQSNLV-------PNAAAEVFRDTFASPLEEPVTKRD 184
P L + P P P +S L P+ +A T SP P ++
Sbjct: 307 PSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAT 366
Query: 185 VLSGVPSEQ 193
G P+ Q
Sbjct: 367 TSLGSPTLQ 375
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/145 (28%), Positives = 47/145 (32%), Gaps = 30/145 (20%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
PP P Q PP P+PPA P AS P P A
Sbjct: 508 PPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF--------SPSASLPMSPLATPP 559
Query: 69 PNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSR 128
P AP APL + PP P SP +A R P + GP
Sbjct: 560 PQAP----PVLAAPLLQV----PPSP-----PASPTLQA-PRRPPTPGPDTSVSGP---- 601
Query: 129 GQAKPLCLCLGLRPPAQPPRFPSAS 153
L L L PP P R PS++
Sbjct: 602 ----RLTLALAPGPPPPPSRSPSST 622
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.0 bits (97), Expect = 8e-04
Identities = 58/211 (27%), Positives = 71/211 (33%), Gaps = 41/211 (19%)
Query: 3 PYDSRCPPKLQI--SAPAQLPPHSLPSSGTQ--------FPNPPAHSLRHRPSRRRERDT 52
P PP LQ S PA P + S G+ P+PP L P +
Sbjct: 303 PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP--- 359
Query: 53 KRHGASSPPKPAACGHPNAPCARDTADPAPLCS-------LTAFFPPGPLHPIAARSPNQ 105
+ PP A P +P A P+P L A F P P P+
Sbjct: 360 ---ALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV------- 409
Query: 106 KATSRNAPLSSKASYPQGPFHSR-GQAKPLCLCLGLR----PPAQPPRFPSASPCQSNLV 160
AP S AS P P + QA P L+ PPA PP PSA+P
Sbjct: 410 -----QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-PPQAP 463
Query: 161 PNAAAEVFRDTFASPLEEPVTKRDVLSGVPS 191
P AA + P P L +PS
Sbjct: 464 PPLAAPPLQLAKPPPQAPPALATPPLQALPS 494
Score = 34.3 bits (77), Expect = 0.17
Identities = 47/184 (25%), Positives = 65/184 (35%), Gaps = 40/184 (21%)
Query: 22 PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPA 81
P PS+ P PP R S E T ++ +P+A G P +R + A
Sbjct: 181 PRPAPSAR---PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSA 237
Query: 82 PLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLR 141
PL A P+ + T P+ P H Q KP L LR
Sbjct: 238 T-----------PLSSPARSGPSARGT------------PRAPAHP-SQPKPKGL-QALR 272
Query: 142 PP-AQPPR---FPSASPCQSNLV--------PNAAAEVFRDTFASPLEEPVTKRDVLSGV 189
PP PPR P+ P S+ + P+ +A T SP P ++ G
Sbjct: 273 PPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 332
Query: 190 PSEQ 193
P+ Q
Sbjct: 333 PTLQ 336
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/145 (28%), Positives = 47/145 (32%), Gaps = 30/145 (20%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
PP P Q PP P+PPA P AS P P A
Sbjct: 469 PPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF--------SPSASLPMSPLATPP 520
Query: 69 PNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSR 128
P AP APL + PP P SP +A R P + GP
Sbjct: 521 PQAP----PVLAAPLLQV----PPSP-----PASPTLQA-PRRPPTPGPDTSVSGP---- 562
Query: 129 GQAKPLCLCLGLRPPAQPPRFPSAS 153
L L L PP P R PS++
Sbjct: 563 ----RLTLALAPGPPPPPSRSPSST 583
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 41.6 bits (96), Expect = 0.001
Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 5/170 (2%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
P +L P+ LP L S +P L+ P R +K S K +
Sbjct: 549 PAELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSS 608
Query: 69 PNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPN--QKATSRNAPLSSKASYPQ-GPF 125
CA P A P P P A +SP+ +K + + AP+ K + Q G
Sbjct: 609 QGTACAGTQPGAQPGAQPGA--SPSPSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAM 666
Query: 126 HSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASP 175
+ +P + L PP+ P + + P +L + ASP
Sbjct: 667 ADQSAGQPSPVSLSPTPPSTPSPYGLSYPQGYSLASGQLSPAAAPPLASP 716
Score = 36.2 bits (82), Expect = 0.046
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 28/154 (18%)
Query: 58 SSPPKPAACGHPNAPCARDTADPAPLCS-LTAFFPPGPLHPIAARS-----------PNQ 105
SS + +C P+ + A PA L + L + P PL AA + P +
Sbjct: 530 SSAGRKVSCAPPSM---QPPAPPAELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGPER 586
Query: 106 KATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAA 165
+T+++ LS ++ P S+G A C G +P AQP P ASP S + +
Sbjct: 587 TSTTKSKELSPGSAQKGSPGSSQGTA-----CAGTQPGAQPGAQPGASPSPSQPPADQSP 641
Query: 166 EVFRDTFAS--------PLEEPVTKRDVLSGVPS 191
R P +P D +G PS
Sbjct: 642 HTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQPS 675
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.2 bits (95), Expect = 0.001
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 42/192 (21%)
Query: 17 PAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKR--------HGASSPPKPAACGH 68
P PP S + T P H H+ +++++ ++ HG S PP P A H
Sbjct: 459 PGPFPP-STGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517
Query: 69 PNAPCARDTADP---APLCSLTAFFPPGPLH------------------PIAARSPNQKA 107
P + A P +P +PPGP H P+++ S + +
Sbjct: 518 PLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSS 577
Query: 108 TSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEV 167
TS+ + S S QGP +G P PP P ++S S ++ A+
Sbjct: 578 TSQGSYPCSHPSPSQGP---QGAPYPF-------PPV--PTVTTSSATLSTVIATVASSP 625
Query: 168 FRDTFASPLEEP 179
ASP P
Sbjct: 626 AGYKTASPPGPP 637
Score = 33.5 bits (75), Expect = 0.30
Identities = 38/153 (24%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
P K AP+ PHSLP + + P PP R SS +A
Sbjct: 346 PEKGPTLAPS---PHSLPPASSSAPAPP----------------MRFPYSSSSSSSAAAS 386
Query: 69 PNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSR 128
++ + +A P P +P P + NQ L S+A + QGP
Sbjct: 387 SSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGP---- 442
Query: 129 GQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVP 161
P L A P FP ++ QS P
Sbjct: 443 -PPPPPYGRLLANSNAHPGPFPPSTGAQSTAHP 474
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.2 bits (95), Expect = 0.001
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 42/192 (21%)
Query: 17 PAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKR--------HGASSPPKPAACGH 68
P PP S + T P H H+ +++++ ++ HG S PP P A H
Sbjct: 459 PGPFPP-STGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517
Query: 69 PNAPCARDTADP---APLCSLTAFFPPGPLH------------------PIAARSPNQKA 107
P + A P +P +PPGP H P+++ S + +
Sbjct: 518 PLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSS 577
Query: 108 TSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEV 167
TS+ + S S QGP +G P PP P ++S S ++ A+
Sbjct: 578 TSQGSYPCSHPSPSQGP---QGAPYPF-------PPV--PTVTTSSATLSTVIATVASSP 625
Query: 168 FRDTFASPLEEP 179
ASP P
Sbjct: 626 AGYKTASPPGPP 637
Score = 33.5 bits (75), Expect = 0.30
Identities = 38/153 (24%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
P K AP+ PHSLP + + P PP R SS +A
Sbjct: 346 PEKGPTLAPS---PHSLPPASSSAPAPP----------------MRFPYSSSSSSSAAAS 386
Query: 69 PNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSR 128
++ + +A P P +P P + NQ L S+A + QGP
Sbjct: 387 SSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGP---- 442
Query: 129 GQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVP 161
P L A P FP ++ QS P
Sbjct: 443 -PPPPPYGRLLANSNAHPGPFPPSTGAQSTAHP 474
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 40.4 bits (93), Expect = 0.002
Identities = 52/183 (28%), Positives = 72/183 (39%), Gaps = 14/183 (7%)
Query: 24 SLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPAPL 83
S SS +QF + A+ + S R + RH + P + P AP A +TA+ P
Sbjct: 351 SSSSSSSQFRSSDANYPAYYESWNRYQ---RHTSYPPRRATREEPPGAPFAENTAERFP- 406
Query: 84 CSLTAFFPPGPLHPIAA--RSPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLR 141
S T++ PP P P R P +A P GP R + +
Sbjct: 407 PSYTSYLPPEPSRPTDQDYRPPASEAPPPEPPEPGGGGGGGGPSPEREEVRT------SP 460
Query: 142 PPAQPPRFPSASPCQSN-LVPNAAAEVFRDTFASPLEEPVTKRDVL-SGVPSEQRNSLMV 199
PA P R S +P +N VP A L+E +K L S E+ NS MV
Sbjct: 461 RPASPARSGSPAPETTNESVPFAQHSSLDSRIEMLLKEQRSKFSFLASDTEEEEENSSMV 520
Query: 200 MEA 202
+ A
Sbjct: 521 LGA 523
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 40.4 bits (93), Expect = 0.002
Identities = 50/165 (30%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNP-PAHSLRHRPSRRRERDTKRHGASSPPKPAACG 67
PP LQ P S P Q P P P S P + + +P +P A
Sbjct: 184 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPT-----ASQAPNQPQA-- 236
Query: 68 HPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQ--KATSRNAPLSSKASYPQGPF 125
P AP AP +L PP P HP SP+ + + +A S S+ Q P
Sbjct: 237 -PTAPVPHTHIQQAP--ALHPQRPPSP-HPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPL 292
Query: 126 HSRGQAKPLCLCLG--LRPPAQPPRF---PSASPCQSNLVPNAAA 165
H +G P L G L+ P P F P AS Q+ L + AA
Sbjct: 293 HGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 337
Score = 39.7 bits (91), Expect = 0.004
Identities = 45/159 (28%), Positives = 53/159 (33%), Gaps = 22/159 (13%)
Query: 6 SRCPPKLQISAPAQLP-PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPA 64
S+ PP+ Q PA L PH P T P PA P A+ PP PA
Sbjct: 355 SQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 414
Query: 65 -------ACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSK 117
+ HP +A P PL P P + P S+N P
Sbjct: 415 LKPLSSLSTHHP------PSAHPPPL----QLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 463
Query: 118 ASYPQGPFHSRGQAKPLC---LCLGLRPPAQPPRFPSAS 153
AS+P H P G PP PP PS S
Sbjct: 464 ASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTS 502
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 40.4 bits (93), Expect = 0.002
Identities = 50/165 (30%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNP-PAHSLRHRPSRRRERDTKRHGASSPPKPAACG 67
PP LQ P S P Q P P P S P + + +P +P A
Sbjct: 738 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPT-----ASQAPNQPQA-- 790
Query: 68 HPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQ--KATSRNAPLSSKASYPQGPF 125
P AP AP +L PP P HP SP+ + + +A S S+ Q P
Sbjct: 791 -PTAPVPHTHIQQAP--ALHPQRPPSP-HPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPL 846
Query: 126 HSRGQAKPLCLCLG--LRPPAQPPRF---PSASPCQSNLVPNAAA 165
H +G P L G L+ P P F P AS Q+ L + AA
Sbjct: 847 HGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 891
Score = 39.7 bits (91), Expect = 0.004
Identities = 45/159 (28%), Positives = 53/159 (33%), Gaps = 22/159 (13%)
Query: 6 SRCPPKLQISAPAQLP-PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPA 64
S+ PP+ Q PA L PH P T P PA P A+ PP PA
Sbjct: 909 SQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 65 -------ACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSK 117
+ HP +A P PL P P + P S+N P
Sbjct: 969 LKPLSSLSTHHP------PSAHPPPL----QLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 1017
Query: 118 ASYPQGPFHSRGQAKPLC---LCLGLRPPAQPPRFPSAS 153
AS+P H P G PP PP PS S
Sbjct: 1018 ASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTS 1056
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 40.4 bits (93), Expect = 0.002
Identities = 50/165 (30%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNP-PAHSLRHRPSRRRERDTKRHGASSPPKPAACG 67
PP LQ P S P Q P P P S P + + +P +P A
Sbjct: 738 PPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPT-----ASQAPNQPQA-- 790
Query: 68 HPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQ--KATSRNAPLSSKASYPQGPF 125
P AP AP +L PP P HP SP+ + + +A S S+ Q P
Sbjct: 791 -PTAPVPHTHIQQAP--ALHPQRPPSP-HPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPL 846
Query: 126 HSRGQAKPLCLCLG--LRPPAQPPRF---PSASPCQSNLVPNAAA 165
H +G P L G L+ P P F P AS Q+ L + AA
Sbjct: 847 HGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAA 891
Score = 39.7 bits (91), Expect = 0.004
Identities = 45/159 (28%), Positives = 53/159 (33%), Gaps = 22/159 (13%)
Query: 6 SRCPPKLQISAPAQLP-PHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPA 64
S+ PP+ Q PA L PH P T P PA P A+ PP PA
Sbjct: 909 SQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 65 -------ACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSK 117
+ HP +A P PL P P + P S+N P
Sbjct: 969 LKPLSSLSTHHP------PSAHPPPL----QLMPQSQPLPSSPAQPPGLTQSQNLP-PPP 1017
Query: 118 ASYPQGPFHSRGQAKPLC---LCLGLRPPAQPPRFPSAS 153
AS+P H P G PP PP PS S
Sbjct: 1018 ASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTS 1056
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 25/185 (13%)
Query: 9 PPKLQISAPAQLPPHS-----LPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKP 63
PP + +P+ PP P + P+PP P R +R+ S PPK
Sbjct: 553 PPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR 612
Query: 64 AACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAP-LSSKASYPQ 122
P P R + P P ++ PP + + T R +P LSSK
Sbjct: 613 RTASPPPPPKRRASPSPPPKRRVSHSPPP--------KQRSSPVTKRRSPSLSSKHRKGS 664
Query: 123 GPFHSRGQAKPLCLCLGLRP-----PAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLE 177
P S +A+ +P P+ PR P S + A++ R SP
Sbjct: 665 SPSRSTREAR------SPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPST 718
Query: 178 EPVTK 182
P+ +
Sbjct: 719 RPIRR 723
Score = 30.4 bits (67), Expect = 2.5
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%)
Query: 36 PAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPL 95
P+H+ RP RR ++ + P P P R P + PP P
Sbjct: 293 PSHT---RPRRRHRSRSRSYSPRRRPSPR-----RRPSPRRRTPPRRM-------PPPPR 337
Query: 96 HPIAARSPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPC 155
H +RSP ++ +A LS +S SR ++ PP +PP+ S+ P
Sbjct: 338 HR-RSRSPVRRRRRSSASLSGSSSSSSS---SRSRS----------PPKKPPKRTSSPPR 383
Query: 156 QSNLVPNAAAEVFRDTFASPLEEPVTK 182
++ + +A+ R SP P K
Sbjct: 384 KTRRLSPSASPPRRRHRPSPPATPPPK 410
Score = 29.3 bits (64), Expect = 5.6
Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 13/143 (9%)
Query: 41 RHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAA 100
RH PSR ++ + P+ P+ P R P+P P P P
Sbjct: 522 RHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTP--PPRR 579
Query: 101 RSPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLV 160
R+P+ R +P + S P R P PP P R S SP V
Sbjct: 580 RTPS-PPPRRRSPSPRRYS---PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRV 635
Query: 161 PNAAAEVFRDTFASPLEEPVTKR 183
++ R + PVTKR
Sbjct: 636 SHSPPPKQRSS-------PVTKR 651
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 38.9 bits (89), Expect = 0.007
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 30/189 (15%)
Query: 27 SSGTQFPNPPAHSLRHRP---SRRRERDTKRHGASSPPKPAACGHPNAPCARDTADPAPL 83
SS P P H L R S R D+ GASS A PN+P +
Sbjct: 1119 SSSDSLPGSPTHGLPARSPTHSYRSTPDSAYLGASSQSSSPASSTPNSPAS--------- 1169
Query: 84 CSLTAFFPPGPLHPIAARSPNQKATSR-----NAPLS--------SKASYPQGPFHSRGQ 130
S + P LH ++ + Q ++R N PLS ++AS P P H+ G
Sbjct: 1170 -SASHHIRPSTLHGLSPKLHRQYRSARCKSAGNIPLSPLAHTPSPTQASPPPLPGHTVGS 1228
Query: 131 A---KPLCLCLGLRPPAQPPRFPSASPCQSNLVPNA-AAEVFRDTFASPLEEPVTKRDVL 186
+ + L PP PR SA P +S L+ +AE + ++ + + K +
Sbjct: 1229 SHTTQSFPAKLHSSPPVVRPRPKSAEPPRSPLLKRVQSAEKLGASLSADKKGALRKHSLE 1288
Query: 187 SGVPSEQRN 195
G P +++
Sbjct: 1289 VGHPDFRKD 1297
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 21 PPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADP 80
PP P+ QF P + D + A G AP A
Sbjct: 16 PPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAG 75
Query: 81 APLCSL-TAFFPPGPLHPIAAR---SPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCL 136
APL F PP P P+ A +P ++ + +P+SS P P S P L
Sbjct: 76 APLMDFGNDFVPPAPRGPLPAAPPVAPERQPSWDPSPVSSTVPAP-SPL-SAAAVSPSKL 133
Query: 137 CLGLRPPAQPPRFPSAS 153
PPA+PP P AS
Sbjct: 134 PEDDEPPARPPPPPPAS 150
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 21 PPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADP 80
PP P+ QF P + D + A G AP A
Sbjct: 16 PPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAG 75
Query: 81 APLCSL-TAFFPPGPLHPIAAR---SPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCL 136
APL F PP P P+ A +P ++ + +P+SS P P S P L
Sbjct: 76 APLMDFGNDFVPPAPRGPLPAAPPVAPERQPSWDPSPVSSTVPAP-SPL-SAAAVSPSKL 133
Query: 137 CLGLRPPAQPPRFPSAS 153
PPA+PP P AS
Sbjct: 134 PEDDEPPARPPPPPPAS 150
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 21 PPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHPNAPCARDTADP 80
PP P+ QF P + D + A G AP A
Sbjct: 16 PPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAAG 75
Query: 81 APLCSL-TAFFPPGPLHPIAAR---SPNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCL 136
APL F PP P P+ A +P ++ + +P+SS P P S P L
Sbjct: 76 APLMDFGNDFVPPAPRGPLPAAPPVAPERQPSWDPSPVSSTVPAP-SPL-SAAAVSPSKL 133
Query: 137 CLGLRPPAQPPRFPSAS 153
PPA+PP P AS
Sbjct: 134 PEDDEPPARPPPPPPAS 150
>gi|22027646 angiomotin like 1 [Homo sapiens]
Length = 956
Score = 38.9 bits (89), Expect = 0.007
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 90 FPPGPLHPIAARS---PNQKATSRNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQP 146
+ P P + + +R P +++P+SS+ S GP HS PL + LG QP
Sbjct: 364 YQPPPEYGVTSRPCQLPFPSTMQQHSPMSSQTSSASGPLHSVSLPLPLPMALG---APQP 420
Query: 147 PRFPSASPCQSNLVPNAAAEVFR 169
P P+ASP Q L P+A A V R
Sbjct: 421 P--PAASPSQ-QLGPDAFAIVER 440
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 38.9 bits (89), Expect = 0.007
Identities = 56/196 (28%), Positives = 70/196 (35%), Gaps = 20/196 (10%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQ----FPNPPAHSLRHRPSRRRERDTKRHGASSPPKPA 64
PPK + PA PP S GT P PPA + T P P+
Sbjct: 1305 PPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPS 1364
Query: 65 ACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNA-PLSSKASYPQG 123
+ P P A + P A PP P A SP TS PLS K + P
Sbjct: 1365 SKEGPTPPAATPSHKGGP-----AMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKA-PAT 1418
Query: 124 PFHSRGQAKPLCLCLGLRPPAQPP----RFPSAS-PCQSNLVPNAAAE--VFRDTFASPL 176
P G A P L PPA P + P+ S P P++ + + T SP
Sbjct: 1419 PVTREGAATP--SKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPK 1476
Query: 177 EEPVTKRDVLSGVPSE 192
E P K+ S P +
Sbjct: 1477 EPPAPKQVATSSSPKK 1492
Score = 35.8 bits (81), Expect = 0.060
Identities = 47/182 (25%), Positives = 57/182 (31%), Gaps = 36/182 (19%)
Query: 10 PKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGHP 69
PK + PA PP P G P+P + P+ G + P P G P
Sbjct: 936 PKGAPTPPAATPPS--PKGGPATPSP-----KWAPTPPAATPPSPKGGPATPSPK--GAP 986
Query: 70 NAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSRG 129
P A P+P P G P A P+ K + P AS
Sbjct: 987 TPPAA---TPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS---------- 1033
Query: 130 QAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPVTKRDVLSGV 189
PPA P P SP + L P A T SP P T L G
Sbjct: 1034 -----------TPPAATPPSPKGSPAATPL-PKGAPTTPAATLPSPKGGPATPS--LKGA 1079
Query: 190 PS 191
P+
Sbjct: 1080 PT 1081
Score = 34.3 bits (77), Expect = 0.17
Identities = 53/234 (22%), Positives = 73/234 (31%), Gaps = 57/234 (24%)
Query: 17 PAQLPPHSLPSSGTQFPNPPAHS-----LRHRPSRRRERDTKRHGASSPPK--------- 62
PA PP P G P+P + P + R GA++P K
Sbjct: 1382 PAMTPPS--PKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVT 1439
Query: 63 ----------PAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHP-----IAARSPNQKA 107
A G P P ++ DP +L A PP P P +A S +KA
Sbjct: 1440 PVSLKKAPATSAPKGGPATPSSK--GDP----TLPAVTPPSPKEPPAPKQVATSSSPKKA 1493
Query: 108 TSRNAPL----------SSKASYPQGPFHSRGQAKPLCLCLGLRPPAQ--------PPRF 149
+ AP+ SS P P R P L + PA PP
Sbjct: 1494 PATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAM 1553
Query: 150 PSASPCQSNLVPNAAAEVFRDTFASPLEEPVTKRDVLSGVPSEQRNSLMVMEAV 203
SP ++ +P + P G PS + L++ AV
Sbjct: 1554 TVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPK--ELLIPPAV 1605
Score = 33.5 bits (75), Expect = 0.30
Identities = 44/154 (28%), Positives = 57/154 (37%), Gaps = 34/154 (22%)
Query: 9 PPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH 68
PPK + PA PP P G P P + P+ G + P P G
Sbjct: 1144 PPKGAPTTPAATPPS--PKGGLATPPP-----KGAPTTPAATPPSPKGGLATPSPK--GA 1194
Query: 69 PNAPCARDT------ADPAPLCSLT--AFFPPGPLHPIAARSPNQKATSRNAPLSSKASY 120
P P A A P+P + T A PP P +A SP + AP ++ A+
Sbjct: 1195 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP------KGAP-TTPAAT 1247
Query: 121 PQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASP 154
P P G A P PP P P+A+P
Sbjct: 1248 PPSP--KGGPATP--------PPKGAPTPPAATP 1271
Score = 32.3 bits (72), Expect = 0.66
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 48/264 (18%)
Query: 10 PKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPP---KPAAC 66
P+ PA+ P +L P P + + P+R+ + TK+ A+SPP P+A
Sbjct: 1666 PQASKGLPAKKGPTALKEVLVA-PAPESTPIITAPTRKGPQ-TKKSSATSPPICPDPSAK 1723
Query: 67 GHPNAPCARDTADPAPLCSL------------TAFFPPGPLHPIAARSPNQKATSRNAPL 114
P + T PAPL + + P GPL P P KA++ PL
Sbjct: 1724 NGSKGPLS--TVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAP-----PESKAST---PL 1773
Query: 115 SSKA-----SYPQGPFHSRGQAKPLCLCLGLRP-PAQPPRFPSASPCQSNLVPNAAAEVF 168
++ A P+ S + P+ L L P P PP+ +P++ V
Sbjct: 1774 TAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLPPK--------QQFLPSSPGLVL 1825
Query: 169 RDTFASPLEEPVTKRDVLSGVPSEQRNSLMVMEAVHFSEGTEKRLEVWF---SWQQP--N 223
++ + PL P + ++L +P E + + ++V + T K + S +QP
Sbjct: 1826 -ESPSKPL-APADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTK 1883
Query: 224 ANQGSGDLRTIPRSEKVISQPDQT 247
N+GSG S + + D T
Sbjct: 1884 NNKGSGTESDSDESVPELEEQDST 1907
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 2 TPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHS-----LRHRPSRRRERDTKRHG 56
TP+ S+ K A LPP PSS P PA + +P + + + H
Sbjct: 179 TPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHV 238
Query: 57 AS-SPPKPAACGHPNAPCARDTADPAPLCSLTAFFPP-----GPLHPIAARS-PNQKATS 109
S + P A P P A A +T F P P P + S PNQK
Sbjct: 239 QSQTQPVSLANTQPRGPPASSPAPAPKFSPVTPKFTPVASKFSPGAPGGSGSQPNQKLGH 298
Query: 110 RNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQS 157
A LS+ PQ P + Q + +P Q + P P Q+
Sbjct: 299 PEA-LSAGTGSPQPPSFTYAQQRE-------KPRVQEKQHPVPPPAQN 338
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 2 TPYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHS-----LRHRPSRRRERDTKRHG 56
TP+ S+ K A LPP PSS P PA + +P + + + H
Sbjct: 179 TPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHV 238
Query: 57 AS-SPPKPAACGHPNAPCARDTADPAPLCSLTAFFPP-----GPLHPIAARS-PNQKATS 109
S + P A P P A A +T F P P P + S PNQK
Sbjct: 239 QSQTQPVSLANTQPRGPPASSPAPAPKFSPVTPKFTPVASKFSPGAPGGSGSQPNQKLGH 298
Query: 110 RNAPLSSKASYPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQS 157
A LS+ PQ P + Q + +P Q + P P Q+
Sbjct: 299 PEA-LSAGTGSPQPPSFTYAQQRE-------KPRVQEKQHPVPPPAQN 338
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 37.7 bits (86), Expect = 0.016
Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 7 RCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPKPAAC 66
+CP L AP + S+ S + N SL R +R KR G S P P +
Sbjct: 614 QCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQR-----KRRGGPSEPTPGS- 667
Query: 67 GHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFH 126
A P C + + P +P SP P K P+ P
Sbjct: 668 -------RPQDATVHPACQIFPHYTPSVAYPW---SPEAHPLICGPPGLDKRLLPETPGP 717
Query: 127 SRGQAKPLCLCLGLRPPAQP 146
++P+ LCL R P +P
Sbjct: 718 CYSNSQPVWLCLTPRQPLEP 737
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 37.4 bits (85), Expect = 0.020
Identities = 49/178 (27%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 11 KLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRP----SRRRERDTKRHGASSPPKPAAC 66
+LQ P+ L S SS +Q P + S + S +SS P P AC
Sbjct: 828 RLQSLIPSALGSASPASSPSQVDTPSSSSFHIQQLAGFSAPAGLSPLLPSSSSSPPPGAC 887
Query: 67 GHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFH 126
G P+AP P+ + T G H S + + PL A PQ
Sbjct: 888 GSPSAP------TPSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQP 941
Query: 127 S---RGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEPVT 181
S G L L PP R PS+SP Q P E+ PL P T
Sbjct: 942 SPAPPGARGGLGLPEHFLPPPPSSRSPSSSPGQLGQPP---GELSLGLATGPLSTPET 996
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 37.4 bits (85), Expect = 0.020
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Query: 57 ASSPPKPAACGHPNAPCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSS 116
ASSP G P + D+ +PL P P S + LS
Sbjct: 951 ASSPASSLGSGTPGT--SSDSRQRSPLSDYMNLDFSSPKSPKPGAPSGHPVGSLDGLLSP 1008
Query: 117 KASYPQGPFHSRGQAKPLCLCLGLRPPAQPP------RFPSASPCQSNLVPNAAAEVFRD 170
+AS P P R A P L+PP PP R P AS + P AA+ + D
Sbjct: 1009 EASSPYPPLPPRPSASP---SSSLQPPPPPPAPGELYRLPPASAVATAQGPGAASSLSSD 1065
Query: 171 T 171
T
Sbjct: 1066 T 1066
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 37.0 bits (84), Expect = 0.027
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 12 LQISAPAQ---LPPHSLPSSGTQFPNPPAH---SLRHRPSRRRERDTKRHGASSPPKPAA 65
L + AP+ LPP + P++ T + PAH +L + R R G P P
Sbjct: 217 LSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIV 276
Query: 66 CGHP--NAPCARDTADPAPLCSLTAFFPPGPLHPIA-ARSPNQKATSRN-APLSSKASYP 121
G P A T+ PA PP P+ A ARSP + +R AP + + P
Sbjct: 277 GGRPENEDSLASQTSPPA---------PPAPVPSTARARSPGARRGARELAPRAGRRRQP 327
Query: 122 QGPFHSRGQAK 132
G R +A+
Sbjct: 328 SGRTSWRRRAR 338
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 37.0 bits (84), Expect = 0.027
Identities = 52/199 (26%), Positives = 68/199 (34%), Gaps = 32/199 (16%)
Query: 3 PYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAHSLRHRPSRRRERDTKRHGASSPPK 62
P + PP L S P + P +LP++ PP P
Sbjct: 529 PLPTMPPPVLPPSLPPPVMPPALPATVPPPGMPPP-------------------VMPPSL 569
Query: 63 PAACGHPNAPCARDTADPAPLC---SLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKAS 119
P + P P + +A P P+ SL++ PP L P + S PLSS
Sbjct: 570 PTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATP 629
Query: 120 YPQGPFHSRGQAKPLCLCLGLRPPAQPPRFPSASPCQSNLVPNAAAEVFRDTFASPLEEP 179
P P P + G+ P P AS QS+ VP T S P
Sbjct: 630 PPGIP--------PPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVSFGSAP 681
Query: 180 VT--KRDVLSGVPSEQRNS 196
T + S PSEQ NS
Sbjct: 682 PTTYHPPLQSAGPSEQVNS 700
Score = 32.0 bits (71), Expect = 0.86
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 11/122 (9%)
Query: 3 PYDSRCPPKLQISAPAQLPPHSLPSSGTQFPNPPAH--SLRHRPSRRRERDTKRHGASSP 60
P S PP P Q PP P + +Q PPA + PS+ T + +SS
Sbjct: 153 PPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSS 212
Query: 61 PKPAACGHPNAPCARDTADPA----PLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSS 116
+ H + A P+ PP P P P K T + PL S
Sbjct: 213 SSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAP-----PGNKTTVQQEPLES 267
Query: 117 KA 118
A
Sbjct: 268 GA 269
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 36.6 bits (83), Expect = 0.035
Identities = 50/175 (28%), Positives = 60/175 (34%), Gaps = 38/175 (21%)
Query: 13 QISAPAQLPPHSLPSSGTQFPNPPA-HSLRHRPSRRRERDTKRHGASSPPKPAACGHPNA 71
Q P LPP S P T PPA H L P AS P PA G P
Sbjct: 989 QQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAP------------ASVVPAPAGSGAP-- 1034
Query: 72 PCARDTADPAPLCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGPFHSRGQA 131
P + ++ TA GP A +P A P P GP Q
Sbjct: 1035 PGSLGPSEQIGQAGSTA----GPQQQQPAGAPQPGAVPPGVPPPG----PHGPSPFPNQQ 1086
Query: 132 KPLCLCLGLRPPAQPPRFPSASPC-----QSNLVPNAAAEVFRDTFASPLEEPVT 181
P + G P + P + SP Q NL+P+ ASPL +P T
Sbjct: 1087 TPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPS----------ASPLPDPGT 1131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,783,850
Number of Sequences: 37866
Number of extensions: 1023953
Number of successful extensions: 5762
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 479
Number of HSP's that attempted gapping in prelim test: 5077
Number of HSP's gapped (non-prelim): 1057
length of query: 353
length of database: 18,247,518
effective HSP length: 103
effective length of query: 250
effective length of database: 14,347,320
effective search space: 3586830000
effective search space used: 3586830000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.