Guide to the Human Genome
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Name: LOC100287774 Sequence: fasta or formatted (199aa) NCBI GI: 239742445
Description:

PREDICTED: hypothetical protein XP_002342517

Not currently referenced in the text

Other entries for this name:
alt prot {199aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         20           2
 C cysteine            3.0          6           1
 D aspartate           2.5          5           1
 E glutamate           5.0         10           1
 F phenylalanine       3.5          7           1
 G glycine             9.0         18           1
 H histidine           2.5          5           1
 I isoleucine          4.5          9           1
 K lysine              5.5         11           2
 L leucine            10.1         20           2
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline             6.5         13           2
 Q glutamine           4.0          8           1
 R arginine           10.1         20           2
 S serine             11.6         23           2
 T threonine           6.0         12           1
 V valine              1.5          3           1
 W tryptophan          3.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342517 
LOC100287774          0.992   PREDICTED: hypothetical protein 
LOC100292765          0.603   PREDICTED: hypothetical protein 
LOC100130172          0.031   PREDICTED: hypothetical protein 
LOC100130172          0.023   PREDICTED: hypothetical protein 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
C17orf65              0.018   hypothetical protein LOC339201 
LOC100287290          0.018   PREDICTED: hypothetical protein 
LOC100287290          0.018   PREDICTED: hypothetical protein XP_002342446 
EPDR1                 0.016   ependymin related protein 1 precursor 
ZNF408                0.016   zinc finger protein 408 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
MUC7                  0.013   mucin 7, secreted precursor 
ASXL2                 0.013   additional sex combs like 2 
CXCR3                 0.013   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.013   chemokine (C-X-C motif) receptor 3 isoform A 
CENPT                 0.013   centromere protein T 
MDC1                  0.013   mediator of DNA-damage checkpoint 1 
SRRM2                 0.013   splicing coactivator subunit SRm300 
HAUS8                 0.010   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.010   sarcoma antigen NY-SAR-48 isoform a 
LOC100292590          0.010   PREDICTED: hypothetical protein 
LOC100130172          0.010   PREDICTED: hypothetical protein 
C17orf96              0.010   hypothetical protein LOC100170841 
SAMD1                 0.010   sterile alpha motif domain containing 1 
ADM                   0.010   adrenomedullin 
LOC646508             0.010   PREDICTED: hypothetical LOC646508 
LOC100293514          0.010   PREDICTED: hypothetical protein 
LOC100293337          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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