Guide to the Human Genome
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Name: LOC100293514 Sequence: fasta or formatted (155aa) NCBI GI: 239756910
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         14           3
 C cysteine            3.2          5           1
 D aspartate           2.6          4           1
 E glutamate           3.9          6           1
 F phenylalanine       1.3          2           1
 G glycine            11.6         18           2
 H histidine           3.9          6           1
 I isoleucine          1.9          3           1
 K lysine              2.6          4           1
 L leucine            10.3         16           6
 M methionine          1.3          2           1
 N asparagine          0.6          1           1
 P proline             9.0         14           1
 Q glutamine           6.5         10           2
 R arginine            9.0         14           1
 S serine              9.7         15           2
 T threonine           1.9          3           1
 V valine              7.1         11           1
 W tryptophan          3.9          6           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290387          1.000   PREDICTED: hypothetical protein XP_002347827 
LOC100289432          1.000   PREDICTED: hypothetical protein XP_002343577 
IGFBP1                0.013   insulin-like growth factor binding protein 1 precurso...
AHDC1                 0.013   AT hook, DNA binding motif, containing 1 
LOC100292765          0.013   PREDICTED: hypothetical protein 
LOC100287774          0.013   PREDICTED: hypothetical protein 
LOC100287774          0.013   PREDICTED: hypothetical protein XP_002342517 
TXNDC5                0.010   thioredoxin domain containing 5 isoform 1 precursor ...
ARHGEF2               0.010   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.010   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.010   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
LOC100130458          0.010   PREDICTED: hypothetical protein 
HPX-2                 0.010   PREDICTED: similar to double homeobox, 4 
LOC100130458          0.010   PREDICTED: hypothetical protein 
LOC100130458          0.010   PREDICTED: hypothetical protein 
FOXD1                 0.010   forkhead box D1 
LOC100287535          0.007   PREDICTED: hypothetical protein XP_002343194 
SHISA5                0.007   scotin 
ZFC3H1                0.007   proline/serine-rich coiled-coil 2 
SSPO                  0.007   SCO-spondin 
PLEKHG2               0.007   common-site lymphoma/leukemia guanine nucleotide ex...
LOC100291995          0.007   PREDICTED: hypothetical protein XP_002345272 
LOC100292325          0.007   PREDICTED: hypothetical protein 
LOC100289978          0.007   PREDICTED: hypothetical protein XP_002348035 
LOC100290350          0.007   PREDICTED: hypothetical protein XP_002347608 
LOC100288183          0.007   PREDICTED: hypothetical protein XP_002343427 
LGALS9C               0.007   galectin 9 like 
HTR3A                 0.007   5-hydroxytryptamine (serotonin) receptor 3A isoform...
PNPLA3                0.007   patatin-like phospholipase domain containing 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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