Guide to the Human Genome
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Name: LOC100292765 Sequence: fasta or formatted (225aa) NCBI GI: 239753941
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         20           2
 C cysteine            1.8          4           1
 D aspartate           1.8          4           1
 E glutamate           7.6         17           1
 F phenylalanine       2.7          6           1
 G glycine             8.4         19           1
 H histidine           2.7          6           1
 I isoleucine          4.4         10           1
 K lysine              6.2         14           2
 L leucine            11.6         26           2
 M methionine          0.4          1           1
 N asparagine          2.2          5           1
 P proline             5.8         13           1
 Q glutamine           2.7          6           1
 R arginine           11.6         26           2
 S serine             11.1         25           2
 T threonine           3.6          8           1
 V valine              3.6          8           2
 W tryptophan          2.2          5           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287774          0.548   PREDICTED: hypothetical protein 
LOC100287774          0.543   PREDICTED: hypothetical protein XP_002342517 
LOC100130128          0.019   PREDICTED: hypothetical protein 
LOC100130128          0.019   PREDICTED: hypothetical protein 
PHLDB3                0.016   pleckstrin homology-like domain, family B, member 3...
LOC100130128          0.014   PREDICTED: hypothetical protein 
MSX2                  0.012   msh homeobox 2 
LOC100289721          0.012   PREDICTED: hypothetical protein XP_002347280 
TSC1                  0.009   tuberous sclerosis 1 protein isoform 1 
TSC1                  0.009   tuberous sclerosis 1 protein isoform 4 
LOC100293514          0.009   PREDICTED: hypothetical protein 
LOC100293604          0.009   PREDICTED: hypothetical protein 
LOC100290387          0.009   PREDICTED: hypothetical protein XP_002347827 
LOC100289432          0.009   PREDICTED: hypothetical protein XP_002343577 
LOC100287837          0.009   PREDICTED: hypothetical protein XP_002343157 
LOC729370             0.009   PREDICTED: hypothetical protein 
NRIP2                 0.009   nuclear receptor interacting protein 2 
LOC100293596          0.007   PREDICTED: similar to mucin 
SP4                   0.007   Sp4 transcription factor 
GALR2                 0.007   galanin receptor 2 
LOC402573             0.007   hypothetical protein LOC402573 
LOC100128556          0.007   PREDICTED: hypothetical protein 
LOC100128556          0.007   PREDICTED: hypothetical protein 
LOC100128556          0.007   PREDICTED: hypothetical protein 
NCOA5                 0.007   nuclear receptor coactivator 5 
CCDC86                0.007   coiled-coil domain containing 86 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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