Guide to the Human Genome
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Name: LOC100289598 Sequence: fasta or formatted (214aa) NCBI GI: 239742067
Description:

PREDICTED: hypothetical protein XP_002342405

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4         35           7
 C cysteine            3.7          8           2
 D aspartate           0.0          0           0
 E glutamate           3.3          7           2
 F phenylalanine       1.9          4           1
 G glycine             6.5         14           4
 H histidine           1.9          4           2
 I isoleucine          1.4          3           1
 K lysine              2.8          6           2
 L leucine            10.3         22           2
 M methionine          0.5          1           1
 N asparagine          1.4          3           1
 P proline            16.4         35           2
 Q glutamine           3.3          7           1
 R arginine            9.3         20           2
 S serine              7.9         17           2
 T threonine           7.9         17           1
 V valine              4.2          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342405 
LOC100292818          1.000   PREDICTED: hypothetical protein 
LOC100290830          1.000   PREDICTED: hypothetical protein XP_002346568 
FOXD1                 0.063   forkhead box D1 
FOXB2                 0.053   forkhead box B2 
SAMD1                 0.049   sterile alpha motif domain containing 1 
MAZ                   0.046   MYC-associated zinc finger protein isoform 2 
MAZ                   0.046   MYC-associated zinc finger protein isoform 1 
ZBTB4                 0.044   zinc finger and BTB domain containing 4 
ZBTB4                 0.044   zinc finger and BTB domain containing 4 
SRCAP                 0.044   Snf2-related CBP activator protein 
TAF4                  0.044   TBP-associated factor 4 
SETD1B                0.044   SET domain containing 1B 
DIDO1                 0.041   death inducer-obliterator 1 isoform c 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
MAP3K11               0.041   mitogen-activated protein kinase kinase kinase 11 [Ho...
LOC389813             0.041   similar to CG15216-PA 
GGN                   0.039   gametogenetin 
C10orf95              0.039   hypothetical protein LOC79946 
LOC100130506          0.039   PREDICTED: hypothetical protein 
LOC100288911          0.039   PREDICTED: hypothetical protein XP_002342241 
RAPH1                 0.039   Ras association and pleckstrin homology domains 1 is...
PRG4                  0.036   proteoglycan 4 isoform D 
PRG4                  0.036   proteoglycan 4 isoform C 
PRG4                  0.036   proteoglycan 4 isoform B 
PRG4                  0.036   proteoglycan 4 isoform A 
LOC100133142          0.036   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.036   PREDICTED: similar to zinc finger protein 208 [Homo...
EIF3F                 0.036   eukaryotic translation initiation factor 3, subunit 5...
INF2                  0.036   inverted formin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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