Guide to the Human Genome
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Name: LOC728847 Sequence: fasta or formatted (130aa) NCBI GI: 239742367
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          5           1
 C cysteine            0.8          1           1
 D aspartate           3.1          4           1
 E glutamate          10.0         13           3
 F phenylalanine       2.3          3           1
 G glycine             3.8          5           2
 H histidine           3.1          4           1
 I isoleucine          3.1          4           1
 K lysine              2.3          3           2
 L leucine             5.4          7           1
 M methionine          3.1          4           1
 N asparagine          3.1          4           1
 P proline            13.1         17           6
 Q glutamine           6.2          8           2
 R arginine            9.2         12           2
 S serine             11.5         15           3
 T threonine          10.0         13           2
 V valine              0.8          1           1
 W tryptophan          3.1          4           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728847             0.984   PREDICTED: hypothetical protein 
LOC728888             0.039   PREDICTED: similar to acyl-CoA synthetase medium-ch...
LOC100132247          0.035   hypothetical protein LOC100132247 
NPIPL3                0.035   nuclear pore complex interacting protein-like 3 [Ho...
ONECUT3               0.035   one cut homeobox 3 
SFPQ                  0.035   splicing factor proline/glutamine rich (polypyrimidin...
LMOD2                 0.031   leiomodin 2 (cardiac) 
XIRP2                 0.031   xin actin-binding repeat containing 2 isoform 1 [Ho...
CCDC6                 0.031   coiled-coil domain containing 6 
CUEDC1                0.031   CUE domain-containing 1 
CENPV                 0.031   proline rich 6 
C17orf96              0.031   hypothetical protein LOC100170841 
CCNK                  0.031   cyclin K isoform 1 
ZNF629                0.031   zinc finger protein 629 
LOC100130716          0.028   PREDICTED: similar to mucin 11 
LOC100130716          0.028   PREDICTED: similar to Mucin-12 
TRRAP                 0.028   transformation/transcription domain-associated protei...
MUC6                  0.028   mucin 6, gastric 
EVL                   0.028   Enah/Vasp-like 
PRR12                 0.028   proline rich 12 
ZFHX4                 0.028   zinc finger homeodomain 4 
TTN                   0.028   titin isoform N2-A 
LOC100292801          0.028   PREDICTED: hypothetical protein 
LOC100290691          0.028   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.028   PREDICTED: hypothetical protein XP_002344202 
MLL5                  0.028   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.028   myeloid/lymphoid or mixed-lineage leukemia 5 
KDM6B                 0.028   lysine (K)-specific demethylase 6B 
SLC26A8               0.028   solute carrier family 26, member 8 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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