Guide to the Human Genome
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Name: LOC100287203 Sequence: fasta or formatted (366aa) NCBI GI: 239741999
Description:

PREDICTED: hypothetical protein XP_002342370

Not currently referenced in the text

Other entries for this name:
alt mRNA {366aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         37           3
 C cysteine            4.1         15           1
 D aspartate           5.2         19           1
 E glutamate           6.3         23           2
 F phenylalanine       3.6         13           1
 G glycine            10.9         40           3
 H histidine           4.9         18           2
 I isoleucine          3.8         14           1
 K lysine              2.7         10           2
 L leucine            12.6         46           2
 M methionine          0.5          2           1
 N asparagine          1.6          6           1
 P proline             7.4         27           2
 Q glutamine           5.2         19           2
 R arginine            3.8         14           1
 S serine              6.0         22           2
 T threonine           3.3         12           1
 V valine              6.6         24           2
 W tryptophan          1.1          4           2
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342370 
LOC100287203          1.000   PREDICTED: hypothetical protein 
LOC100291808          0.997   PREDICTED: hypothetical protein XP_002345696 
RLN2                  0.011   relaxin 2 isoform 2 
RGS12                 0.011   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.010   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.010   regulator of G-protein signalling 12 isoform 3 [Homo...
CHRDL2                0.010   chordin-like 2 
NEUROG2               0.008   neurogenin 2 
AAK1                  0.008   AP2 associated kinase 1 
SETD4                 0.008   SET domain containing 4 isoform c 
SETD4                 0.008   SET domain containing 4 isoform a 
SIX5                  0.007   sine oculis homeobox homolog 5 
TP53INP2              0.007   tumor protein p53 inducible nuclear protein 2 
BZRAP1                0.007   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.007   peripheral benzodiazepine receptor-associated prote...
LOC100293778          0.007   PREDICTED: hypothetical protein 
LOC100293750          0.007   PREDICTED: hypothetical protein 
LOC100291226          0.007   PREDICTED: hypothetical protein XP_002346924 
LOC100287992          0.007   PREDICTED: hypothetical protein XP_002342800 
LOC100287956          0.007   PREDICTED: hypothetical protein XP_002342799 
LOC100287992          0.007   PREDICTED: hypothetical protein 
LOC100287956          0.007   PREDICTED: hypothetical protein 
RLN1                  0.005   relaxin 1 preproprotein 
NT5DC3                0.005   5'-nucleotidase domain containing 3 
DPY19L1               0.005   dpy-19-like 1 
STK39                 0.005   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
LDB3                  0.005   LIM domain binding 3 isoform 3 
LDB3                  0.005   LIM domain binding 3 isoform 1 
ADAD1                 0.005   adenosine deaminase domain containing 1 (testis-spe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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