Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287992 Sequence: fasta or formatted (193aa) NCBI GI: 239743189
Description:

PREDICTED: hypothetical protein XP_002342800

Not currently referenced in the text

Other entries for this name:
alt mRNA {193aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         17           2
 C cysteine            4.7          9           2
 D aspartate           5.2         10           1
 E glutamate           5.2         10           2
 F phenylalanine       3.1          6           1
 G glycine            10.4         20           2
 H histidine           3.6          7           1
 I isoleucine          1.6          3           1
 K lysine              1.6          3           1
 L leucine             4.7          9           1
 M methionine          1.6          3           1
 N asparagine          0.5          1           1
 P proline             7.8         15           2
 Q glutamine           8.3         16           1
 R arginine            5.7         11           2
 S serine              6.2         12           1
 T threonine           8.3         16           2
 V valine              8.8         17           2
 W tryptophan          2.1          4           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342800 
LOC100287992          1.000   PREDICTED: hypothetical protein 
LOC100291226          0.990   PREDICTED: hypothetical protein XP_002346924 
LOC100287956          0.990   PREDICTED: hypothetical protein XP_002342799 
LOC100287956          0.990   PREDICTED: hypothetical protein 
LOC100293778          0.990   PREDICTED: hypothetical protein 
LOC100293750          0.987   PREDICTED: hypothetical protein 
LOC100291807          0.018   PREDICTED: hypothetical protein XP_002345507 
LOC100288309          0.018   PREDICTED: hypothetical protein XP_002344234 
CACNA1I               0.013   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.013   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100291808          0.013   PREDICTED: hypothetical protein XP_002345696 
LOC100287203          0.013   PREDICTED: hypothetical protein 
LOC100287203          0.013   PREDICTED: hypothetical protein XP_002342370 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 2 
COL3A1                0.008   collagen type III alpha 1 preproprotein 
MUC12                 0.008   PREDICTED: mucin 12 
PTPRG                 0.008   protein tyrosine phosphatase, receptor type, G prec...
WDFY4                 0.008   WDFY family member 4 
ZXDC                  0.008   ZXD family zinc finger C isoform 2 
ZXDC                  0.008   ZXD family zinc finger C isoform 1 
LOC644538             0.008   PREDICTED: hypothetical protein 
COL13A1               0.008   alpha 1 type XIII collagen isoform 7 
MFSD7                 0.008   major facilitator superfamily domain containing 7 [H...
LOC100130716          0.005   PREDICTED: similar to mucin 11 
LOC100130716          0.005   PREDICTED: similar to Mucin-12 
MUC12                 0.005   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12, cell surface associated 
ZNF750                0.005   zinc finger protein 750 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press