Guide to the Human Genome
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Search of human proteins with 239741831

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]           525   e-149
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap...   523   e-149
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap...   523   e-149
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]            46   3e-05
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]            46   3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    46   3e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    43   3e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    43   3e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    43   3e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            42   4e-04
gi|223941923 OTU domain containing 1 [Homo sapiens]                    42   5e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       42   7e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      41   0.001
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    41   0.001
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    41   0.001
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    41   0.001
gi|13376335 hypothetical protein LOC79946 [Homo sapiens]               41   0.001
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                40   0.002
gi|23510413 sorting nexin 26 [Homo sapiens]                            40   0.003
gi|222418647 mucin 7, secreted precursor [Homo sapiens]                39   0.003
gi|222418649 mucin 7, secreted precursor [Homo sapiens]                39   0.003
gi|222418645 mucin 7, secreted precursor [Homo sapiens]                39   0.003
gi|41281612 zinc finger protein 828 [Homo sapiens]                     39   0.003
gi|150170670 piccolo isoform 2 [Homo sapiens]                          39   0.003
gi|150378539 piccolo isoform 1 [Homo sapiens]                          39   0.003
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]      39   0.003
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa...    39   0.004
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    39   0.004
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    39   0.004

>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score =  525 bits (1351), Expect = e-149
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
           MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60

Query: 61  GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
           GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61  GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120

Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
           SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180

Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
           AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240

Query: 241 ESPAQFNISSENLPVRK 257
           ESPAQFNISSENLPVRK
Sbjct: 241 ESPAQFNISSENLPVRK 257


>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
           sapiens]
          Length = 262

 Score =  523 bits (1347), Expect = e-149
 Identities = 256/257 (99%), Positives = 256/257 (99%)

Query: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
           MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60

Query: 61  GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
           GL APPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61  GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120

Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
           SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180

Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
           AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240

Query: 241 ESPAQFNISSENLPVRK 257
           ESPAQFNISSENLPVRK
Sbjct: 241 ESPAQFNISSENLPVRK 257


>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
           sapiens]
          Length = 262

 Score =  523 bits (1347), Expect = e-149
 Identities = 256/257 (99%), Positives = 256/257 (99%)

Query: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
           MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1   MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60

Query: 61  GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
           GL APPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61  GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120

Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
           SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180

Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
           AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240

Query: 241 ESPAQFNISSENLPVRK 257
           ESPAQFNISSENLPVRK
Sbjct: 241 ESPAQFNISSENLPVRK 257


>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 58/198 (29%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 54  WPSASALGLAAPPKDAEDRARPASGLRGA----RVLSEGREPRASLRVQVRPGLDVAAPG 109
           W S   LG    P             RG     R  ++GR P  S R   R    V   G
Sbjct: 24  WASWRLLGCIPSPCAGRGLEALGRDWRGTVAEPRPEAQGRVP--SFRSNARRVRSVRGGG 81

Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPG-------RRARARAGTGFPF 162
           V   + P+PP   A  G   P   A  AA A P     P        RR RAR   G   
Sbjct: 82  V---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPGIRP 136

Query: 163 FPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPA 222
            P P P P +  P+ ARG         W    +SSP+    +G      P C P+P+   
Sbjct: 137 SPSPSPSP-SPSPSPARGGR-------WTTCASSSPALPGTDGVLRRMSPVCPPSPV--V 186

Query: 223 LALLKTSSSHQSLASPYP 240
           LA L +S    +  +P P
Sbjct: 187 LACLVSSPHVPASLTPPP 204


>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 50/162 (30%), Positives = 64/162 (39%), Gaps = 24/162 (14%)

Query: 86  SEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGA 145
           ++GR P  S R   R    V   GV   + P+PP   A  G   P   A  AA A P   
Sbjct: 60  AQGRVP--SFRSNARRVRSVRGGGV---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSL 112

Query: 146 EVPG-------RRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
             P        RR RAR   G    P P P P +  P+ ARG         W    +SSP
Sbjct: 113 RKPSPSPSPSLRRRRARNSPGIRPSPSPSPSP-SPSPSPARGGR-------WTTCASSSP 164

Query: 199 SCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
           +    +G      P C P+P+   LA L +S    +  +P P
Sbjct: 165 ALPGTDGVLRRMSPVCPPSPV--VLACLVSSPHVPASLTPPP 204


>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 50/162 (30%), Positives = 64/162 (39%), Gaps = 24/162 (14%)

Query: 86  SEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGA 145
           ++GR P  S R   R    V   GV   + P+PP   A  G   P   A  AA A P   
Sbjct: 60  AQGRVP--SFRSNARRVRSVRGGGV---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSL 112

Query: 146 EVPG-------RRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
             P        RR RAR   G    P P P P +  P+ ARG         W    +SSP
Sbjct: 113 RKPSPSPSPSLRRRRARNSPGIRPSPSPSPSP-SPSPSPARGGR-------WTTCASSSP 164

Query: 199 SCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
           +    +G      P C P+P+   LA L +S    +  +P P
Sbjct: 165 ALPGTDGVLRRMSPVCPPSPV--VLACLVSSPHVPASLTPPP 204


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 61/213 (28%), Positives = 80/213 (37%), Gaps = 28/213 (13%)

Query: 40  SALPAAVLNSGARVWPSASALGL--AAPPKDAEDRARPASGLRGARVLSEGREPR----- 92
           S  PA    +G    P+A A G   AAP      RARP  G          R P      
Sbjct: 64  SGSPAGAAGAG----PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGP 119

Query: 93  ASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRA 152
           A    ++RP  + +A     +   +   +   P P GP  PA  AALA            
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA------------ 167

Query: 153 RARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS-PTSSPSCSEGNGESAGND 211
            ARAG G    PGP P P    PA    A    G +A   S   ++P+ S  N   A   
Sbjct: 168 -ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALL 226

Query: 212 PNCQPAPLQPALALLKTSSSHQSLASPYPESPA 244
           P   P P  P   +++T     + A P P +P+
Sbjct: 227 P--LPKPAAPG-TVIQTPPFVGAAAPPAPAAPS 256



 Score = 35.0 bits (79), Expect = 0.064
 Identities = 56/201 (27%), Positives = 73/201 (36%), Gaps = 36/201 (17%)

Query: 56  SASALGLAAPPKDAEDRARPASGL--RGARVLSEGREPRA-SLRVQVRPGLDVAAPGVCS 112
           +A  L  +A   ++   A PA  L   G   L    +P A    +Q  P +  AAP   +
Sbjct: 194 AAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPP--A 251

Query: 113 LSCPSPPRSSAHPGPRG--PLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRP 170
            + PSPP + A   P    P  P   A LARP                     PG    P
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPAPATLARP---------------------PGHPAGP 290

Query: 171 RTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPN---CQPAP----LQPAL 223
            T  PA    A A  GGSA   +P  +P+     G S    P      PAP      P  
Sbjct: 291 PTAAPAVPPPAAAQNGGSA-GAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349

Query: 224 ALLKTSSSHQSLASPYPESPA 244
            +     + Q+LA+  P S A
Sbjct: 350 VVQAAPPAAQTLAASGPASTA 370


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 35  GVRERSALPAAVLNSGARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
           G R    LP      G R      A GL  PP   ED  R   G  G R L     PR  
Sbjct: 470 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 525

Query: 95  LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
           L  +  PG+    PGV  +  P  P+ S      PGP G         L  P GA  P  
Sbjct: 526 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 584

Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
               +   G P  PG D      PP H
Sbjct: 585 EKGPQGKPGLPGMPGSD-----GPPGH 606



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
           +V  PG      P  P+    P G  GP  P L+    +     +PG   R   +   GF
Sbjct: 672 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 729

Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
           P FPG       R  +   G    RG  G   +R P  +   S   G S G+ P+  P
Sbjct: 730 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 787



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)

Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
           P     HPGP GP           P    +PG   +     G    PGP   P    PA 
Sbjct: 852 PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 896

Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
            RG    RG           P  + G G      P+  P P
Sbjct: 897 LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 927



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)

Query: 74  RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
           R A+G  GA+  S G  P                PG   L  P P   +  PGP+GP  P
Sbjct: 766 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 810

Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
                   P    +PG   + R   GF    GP   P    P  A G     G       
Sbjct: 811 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 861

Query: 194 PTSSPSCSEGNGESAGND 211
           P   P   +G   +AG +
Sbjct: 862 P--GPPGEQGLPGTAGKE 877


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 35  GVRERSALPAAVLNSGARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
           G R    LP      G R      A GL  PP   ED  R   G  G R L     PR  
Sbjct: 449 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 504

Query: 95  LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
           L  +  PG+    PGV  +  P  P+ S      PGP G         L  P GA  P  
Sbjct: 505 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 563

Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
               +   G P  PG D      PP H
Sbjct: 564 EKGPQGKPGLPGMPGSD-----GPPGH 585



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
           +V  PG      P  P+    P G  GP  P L+    +     +PG   R   +   GF
Sbjct: 651 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 708

Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
           P FPG       R  +   G    RG  G   +R P  +   S   G S G+ P+  P
Sbjct: 709 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 766



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)

Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
           P     HPGP GP           P    +PG   +     G    PGP   P    PA 
Sbjct: 831 PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 875

Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
            RG    RG           P  + G G      P+  P P
Sbjct: 876 LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 906



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)

Query: 74  RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
           R A+G  GA+  S G  P                PG   L  P P   +  PGP+GP  P
Sbjct: 745 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 789

Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
                   P    +PG   + R   GF    GP   P    P  A G     G       
Sbjct: 790 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 840

Query: 194 PTSSPSCSEGNGESAGND 211
           P   P   +G   +AG +
Sbjct: 841 P--GPPGEQGLPGTAGKE 856


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 35  GVRERSALPAAVLNSGARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
           G R    LP      G R      A GL  PP   ED  R   G  G R L     PR  
Sbjct: 556 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 611

Query: 95  LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
           L  +  PG+    PGV  +  P  P+ S      PGP G         L  P GA  P  
Sbjct: 612 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 670

Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
               +   G P  PG D      PP H
Sbjct: 671 EKGPQGKPGLPGMPGSD-----GPPGH 692



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
           +V  PG      P  P+    P G  GP  P L+    +     +PG   R   +   GF
Sbjct: 758 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 815

Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
           P FPG       R  +   G    RG  G   +R P  +   S   G S G+ P+  P
Sbjct: 816 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 873



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)

Query: 118  PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
            P     HPGP GP           P    +PG   +     G    PGP   P    PA 
Sbjct: 938  PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 982

Query: 178  ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
             RG    RG           P  + G G      P+  P P
Sbjct: 983  LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 1013



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)

Query: 74  RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
           R A+G  GA+  S G  P                PG   L  P P   +  PGP+GP  P
Sbjct: 852 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 896

Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
                   P    +PG   + R   GF    GP   P    P  A G     G       
Sbjct: 897 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 947

Query: 194 PTSSPSCSEGNGESAGND 211
           P   P   +G   +AG +
Sbjct: 948 P--GPPGEQGLPGTAGKE 963


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 65/228 (28%), Positives = 77/228 (33%), Gaps = 38/228 (16%)

Query: 35  GVRERSALPAAVLNSGARVWP---SASALGLAA-----PP---KDAEDRARPASGLRGAR 83
           GV E  A P      G+R  P   SAS+   AA     PP        RA   S LR A 
Sbjct: 15  GVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAAP 74

Query: 84  VLSEGREPRASLRVQVRPGL--------DVAAPGVCSLSCPSPPRSSAHPGPRGPLFPAL 135
             +    PR       R G           AA      + P+  R    PGP  PL P  
Sbjct: 75  AAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRS 134

Query: 136 LAALAR-----PHGAEV---PGRRARARAGTGFPFFPGP----------DPRPRTRPPAH 177
                R     P    +   PG R RA++  G    P P           PR   RP A 
Sbjct: 135 RHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAP 194

Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGE-SAGNDPNCQPAPLQPALA 224
             G H  R  +  +    S PS    NG+ +AG     QP P  P  A
Sbjct: 195 RPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPPPCA 242


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 58/207 (28%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 41  ALPAAVLNSGARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVR 100
           A PAA       + P  +A G A  P+  E +   A+  R A  +   + P  S   +V 
Sbjct: 24  APPAAATPFKVSLQPPGAA-GAAPEPETGECQPAAAAEHREAAAVPAAKMPAFSSCFEVV 82

Query: 101 PGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGF 160
            G   AAP   + +   PP +S  P P  P + +      R  GA+    R         
Sbjct: 83  SG--AAAP---ASAAAGPPGASCKP-PLPPHYTSTAQITVRALGAD----RLLLHGPDPV 132

Query: 161 PFFPGPDPRPRTR----PPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESA---GNDPN 213
           P   G    PR R     PA A      RG SAW       P C E  G  A   G D N
Sbjct: 133 PGAAGSAAAPRGRCLLLAPAPAAPVPPRRGSSAWLLEELLRPDCPEPAGLDATREGPDRN 192

Query: 214 CQPAPLQPALALLKTSSSHQSLASPYP 240
            + +  + ALA  K      +  SP P
Sbjct: 193 FRLSEHRQALAAAKHRGPAATPGSPDP 219



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 52/177 (29%), Positives = 61/177 (34%), Gaps = 32/177 (18%)

Query: 37  RERSALPAAVLN---------SGARVWPSASALGLAA------PPKDAEDRARPASGLRG 81
           RE +A+PAA +          SGA    SA+A    A      PP            L  
Sbjct: 62  REAAAVPAAKMPAFSSCFEVVSGAAAPASAAAGPPGASCKPPLPPHYTSTAQITVRALGA 121

Query: 82  ARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALAR 141
            R+L  G +P     V    G   A  G C L  P+P   +A   PR      LL  L R
Sbjct: 122 DRLLLHGPDP-----VPGAAGSAAAPRGRCLLLAPAP---AAPVPPRRGSSAWLLEELLR 173

Query: 142 PHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
           P   E  G  A            GPD   R      A  A  HRG +A   SP   P
Sbjct: 174 PDCPEPAGLDATRE---------GPDRNFRLSEHRQALAAAKHRGPAATPGSPDPGP 221


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 47/190 (24%), Positives = 61/190 (32%), Gaps = 39/190 (20%)

Query: 76  ASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPAL 135
           + G RG R       PR    +   PG+    PG      P PP   +HPGP G      
Sbjct: 139 SQGPRGERGPKGRPGPRGPQGIDGEPGVP-GQPGA-----PGPPGHPSHPGPDG------ 186

Query: 136 LAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRG--------- 186
              L+RP  A++ G   ++  G+     PG       R P   +G     G         
Sbjct: 187 ---LSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPG 243

Query: 187 -----GSAWKRSPTSSPSCSEGNGESAGN----------DPNCQPAPLQPALALLKTSSS 231
                G    R P   P     +GE   N           P  +  P  P L  LK    
Sbjct: 244 DPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRG 303

Query: 232 HQSLASPYPE 241
           H+ L  P  E
Sbjct: 304 HKGLEGPKGE 313



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 44/168 (26%), Positives = 51/168 (30%), Gaps = 14/168 (8%)

Query: 61  GLAAPPKD-AEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCS-LSCPSP 118
           GL  PP       +R  +G  GA   +  + P     V+  PG     PG       P P
Sbjct: 822 GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG----EPGQKGDAGSPGP 877

Query: 119 PRSSAHPGPRGPL-FPALLAALAR---PHGAEVPGRRARA--RAGTGFPFFPGPDPRPRT 172
              +  PGP GP   P L         P     PG   R       G P   GP   P  
Sbjct: 878 QGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGK 937

Query: 173 RPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
             P   RG     G  G      P   P      GE     P+  P P
Sbjct: 938 EGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGP 985



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 37/144 (25%), Positives = 44/144 (30%), Gaps = 27/144 (18%)

Query: 118  PPRSSAHPGPRGPL------FPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPR 171
            PP  +  PGP GPL       P  L      HG       A    G G    PG D +P 
Sbjct: 919  PPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPG 978

Query: 172  TRPPAHARGAHAHRG-----------GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQ 220
               P    G    RG           G      P  +P      G +    P   P P+ 
Sbjct: 979  PDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGP---PGPVG 1035

Query: 221  PALALLKTSSSHQSLASPYPESPA 244
            P         S+  +  P PE PA
Sbjct: 1036 P-------PGSNGPVGEPGPEGPA 1052



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 31/109 (28%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
           PP S  +PG RG   P      A P G   P  +   +   G P   G    P  +  A 
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQG---PDGQPGVKGEPGEPGQKGDAGSPGPQGLAG 882

Query: 178 ARGAHAHRGGSAWKRS-PTSSPSCSEGNGESAGN----DPNCQPAPLQP 221
           + G H   G    K    T  P  + G   SAG      P   P P  P
Sbjct: 883 SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGP 931



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 118  PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
            P     +PGP GP+ P  +       G E P            P  PGP   P   PP H
Sbjct: 1183 PSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP------------PGEPGPPGPP--GPPGH 1228

Query: 178  ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLAS 237
               A     G   +  P   P  +E   ++A +D N     +   L  L  SS  +++ S
Sbjct: 1229 LTAALGDIMGHYDESMPDPLPEFTE--DQAAPDDKNKTDPGVHATLKSL--SSQIETMRS 1284

Query: 238  P 238
            P
Sbjct: 1285 P 1285


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 46/163 (28%), Positives = 57/163 (34%), Gaps = 27/163 (16%)

Query: 50   GARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPG 109
            GA  +P A+  G   PP  + +   P  G  G      G+ PR       RPG +V  PG
Sbjct: 872  GATGFPGAA--GRVGPPGPSGNAGPP--GPPGPAGKEGGKGPRGETGPAGRPG-EVGPPG 926

Query: 110  VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA-----RAGTGFPFFP 164
                  P P      PG  GP       A   P    + G+R        R   GFP  P
Sbjct: 927  P-----PGPAGEKGSPGADGPA-----GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 976

Query: 165  GPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGES 207
            GP   P  + P+ A G     G       P   P  +   GES
Sbjct: 977  GPSGEPGKQGPSGASGERGPPG-------PMGPPGLAGPPGES 1012



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 17/137 (12%)

Query: 43  PAAVLNSGARVWPSASALGLAAPPKDA-EDRARPASGLRGARVLSEGREPRASLRVQVRP 101
           P +  ++GA+  P    +G+  PP  A E+  R A G  G   L      R     +  P
Sbjct: 439 PGSKGDTGAKGEPGP--VGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496

Query: 102 GLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFP 161
           G D    GV     P+  R S  PGP GP          RP  A +PG    A+  TG P
Sbjct: 497 GAD----GVAGPKGPAGERGS--PGPAGP--KGSPGEAGRPGEAGLPG----AKGLTGSP 544

Query: 162 FFPGPDPRPRTRPPAHA 178
             PGPD   +T PP  A
Sbjct: 545 GSPGPD--GKTGPPGPA 559



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 52/187 (27%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 43  PAAVLNSGARVWPS-ASALGLAAPPKDAEDRARP-------ASGLRGARVLSEGREPRAS 94
           P A    GA+  P  A A G A PP  A     P       A G +GAR       P A+
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR--GSAGPPGAT 874

Query: 95  LRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA 154
                  G   AA  V       PP  S + GP GP  PA       P G   P  R   
Sbjct: 875 -------GFPGAAGRV------GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921

Query: 155 RAGTGFPFFPGPDPRPRTRPPAHARGAHAHRG--------GSAWKRSPTSSPSCSEGNGE 206
               G P   G    P    PA A G    +G        G   +R     P     +GE
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981

Query: 207 SAGNDPN 213
                P+
Sbjct: 982 PGKQGPS 988



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 8/112 (7%)

Query: 116 PSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPP 175
           P P      PGP G        A   P    +PG     R G G   FPG D     + P
Sbjct: 451 PGPVGVQGPPGPAGE--EGKRGARGEPGPTGLPGPPGE-RGGPGSRGFPGADGVAGPKGP 507

Query: 176 AHARGAHAHRG-----GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPA 222
           A  RG+    G     G A +      P      G      P+ +  P  PA
Sbjct: 508 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA 559



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 13/154 (8%)

Query: 71  DRARPAS----GLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHP- 125
           +R RP +    G RG    +    P         PG    A G    + P  PR S  P 
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP-GAVGAKGEAGPQGPRGSEGPQ 367

Query: 126 GPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHR 185
           G RG   P   A  A P G      +  A+   G P   G    P  R P+  +G     
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP---- 423

Query: 186 GGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPL 219
           GG    +  +  P      G++       +P P+
Sbjct: 424 GGPPGPKGNSGEPGAPGSKGDTGAKG---EPGPV 454



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 43/168 (25%), Positives = 55/168 (32%), Gaps = 37/168 (22%)

Query: 50  GARVWPSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPG 109
           G+R +P A   G+A P   A +R  P               P+ S     RPG +   PG
Sbjct: 491 GSRGFPGAD--GVAGPKGPAGERGSPGPA-----------GPKGSPGEAGRPG-EAGLPG 536

Query: 110 VCSLSC-------------PSPPRSSAHPGPRGP---LFPALLAALARPHGAEVPGRRAR 153
              L+              P P      PGP GP      A +     P GA     +A 
Sbjct: 537 AKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG 596

Query: 154 ARAGTGFPFFPGP---DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
            R   G P   GP   D     + P    G    RG    ++ P  SP
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG----EQGPAGSP 640


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 61  GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
           G  AP  ++     P+S       LS G+ P   L +   P      P V +++ P PP 
Sbjct: 731 GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 788

Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
               P P         ++ A PH    P   + A A +  P   P   P P   PP    
Sbjct: 789 LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 839

Query: 180 GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
            + A  G      S +SS S S  +  S+ + P+  P PL    A+    SS  +L +  
Sbjct: 840 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 894

Query: 240 PE-SPAQFNISSENLPVRK 257
           P  S  Q  + +E L  R+
Sbjct: 895 PMISFKQEELENEGLKPRE 913


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 61   GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
            G  AP  ++     P+S       LS G+ P   L +   P      P V +++ P PP 
Sbjct: 932  GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 989

Query: 121  SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
                P P         ++ A PH    P   + A A +  P   P   P P   PP    
Sbjct: 990  LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040

Query: 180  GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
             + A  G      S +SS S S  +  S+ + P+  P PL    A+    SS  +L +  
Sbjct: 1041 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 1095

Query: 240  PE-SPAQFNISSENLPVRK 257
            P  S  Q  + +E L  R+
Sbjct: 1096 PMISFKQEELENEGLKPRE 1114


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 61   GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
            G  AP  ++     P+S       LS G+ P   L +   P      P V +++ P PP 
Sbjct: 932  GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 989

Query: 121  SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
                P P         ++ A PH    P   + A A +  P   P   P P   PP    
Sbjct: 990  LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040

Query: 180  GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
             + A  G      S +SS S S  +  S+ + P+  P PL    A+    SS  +L +  
Sbjct: 1041 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 1095

Query: 240  PE-SPAQFNISSENLPVRK 257
            P  S  Q  + +E L  R+
Sbjct: 1096 PMISFKQEELENEGLKPRE 1114


>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
          Length = 257

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 49  SGARVWPSASA--LGLAAPPKDAEDR--ARPASGLRGARVLSEGREP-RASLRVQVRPGL 103
           SG+R  P A     G A  P     R   RP        + + GR P RAS R +     
Sbjct: 16  SGSRRLPKAEGDKSGSAGAPSKNSSRLGGRPC-------MCTAGRRPNRASGRRRRSCSP 68

Query: 104 DVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHG----AEVPGRRARARAGTG 159
               P +C      P  S+A PG       A + A  RPHG    +  P R  R R   G
Sbjct: 69  APTWPPLCCYPQSRPTASAAGPG-------ACMRASGRPHGNTTASTAPPRHPRPRRPGG 121

Query: 160 FPFFPGPDPRPRTRPPAHARGAHAHR------GGSAWKRSPTSSPSCSEGNGESAGNDPN 213
               P P P     PP  +R     R       G   +R+    PSC+ G   SA   P 
Sbjct: 122 PALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKPSCA-GAAWSARGAPL 180

Query: 214 C 214
           C
Sbjct: 181 C 181


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 20/166 (12%)

Query: 105 VAAPGVCSLSCPSPPRSSAH-PGPRGPLFPALLAALARPHG-AEVPGRRARARAGTGFPF 162
           +A+  + S + P+P  + A  P P     PAL +A  +    +EVP R A  +     P 
Sbjct: 494 LASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPE 553

Query: 163 FPGP--DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP----SCSEGNGESAGN------ 210
              P  D   RT+ PA AR        S  + SP + P    S S G  ++         
Sbjct: 554 TAAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSS 613

Query: 211 ------DPNCQPAPLQPALALLKTSSSHQSLASPYPESPAQFNISS 250
                  P   P P QPA    + S +  S ASP P SP+  ++S+
Sbjct: 614 LRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPVSLSN 659


>gi|23510413 sorting nexin 26 [Homo sapiens]
          Length = 1126

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 36/107 (33%), Positives = 39/107 (36%), Gaps = 24/107 (22%)

Query: 89   REPRASLRVQVRPGLDVAAPGVCSLSCPSPP---RSSAHPGPRGPLFPALLAALARPHGA 145
            R P     + V   L    P   S S  SPP   RS + PGP  P  P    A   P G 
Sbjct: 999  RRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRA---PWGP 1055

Query: 146  EVPGRRARARAGTGFPFFPGP--DPRP----RTRPPAHARGAHAHRG 186
              P R             PGP   P P    R  PPA+ RG   HRG
Sbjct: 1056 RTPHR------------VPGPWGPPEPLLLYRAAPPAYGRGGELHRG 1090


>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 49/184 (26%), Positives = 63/184 (34%), Gaps = 23/184 (12%)

Query: 63  AAPPKDAEDRARPASGLRGARVLSEGREPRASLRV---QVRPGLDVAAPGVCSLSCPSPP 119
           AAPP  +     P S        +    P A+ +       P    AAP     + P+PP
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPP 226

Query: 120 RSSAHP----GPRGP--LFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTR 173
            SSA P     P  P    PA L++ A P    VP       A T  P      P     
Sbjct: 227 SSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPSSASAPPETTAA 283

Query: 174 PPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQ 233
           PP            SA   +P SSP+  E         PN  P  L P  +    + +HQ
Sbjct: 284 PPT----------PSATTPAPPSSPAPQETTAAPI-TTPNSSPTTLAPDTSETSAAPTHQ 332

Query: 234 SLAS 237
           +  S
Sbjct: 333 TTTS 336



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 106 AAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA----RAGTGFP 161
           AAP   S + P+PP SSA P       P   A    P  +  P     A     A T  P
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAP-PTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225

Query: 162 FFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPT--SSPSCSEGNGESAGNDPNCQPAPL 219
                 P     PP  +    A    SA   +     +PS +  +  SA   P    AP 
Sbjct: 226 PSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPP 285

Query: 220 QPALALLKTSSSHQSLASPYPESPAQFNISSEN 252
            P      ++++    +SP P+      I++ N
Sbjct: 286 TP------SATTPAPPSSPAPQETTAAPITTPN 312


>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 49/184 (26%), Positives = 63/184 (34%), Gaps = 23/184 (12%)

Query: 63  AAPPKDAEDRARPASGLRGARVLSEGREPRASLRV---QVRPGLDVAAPGVCSLSCPSPP 119
           AAPP  +     P S        +    P A+ +       P    AAP     + P+PP
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPP 226

Query: 120 RSSAHP----GPRGP--LFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTR 173
            SSA P     P  P    PA L++ A P    VP       A T  P      P     
Sbjct: 227 SSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPSSASAPPETTAA 283

Query: 174 PPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQ 233
           PP            SA   +P SSP+  E         PN  P  L P  +    + +HQ
Sbjct: 284 PPT----------PSATTPAPPSSPAPQETTAAPI-TTPNSSPTTLAPDTSETSAAPTHQ 332

Query: 234 SLAS 237
           +  S
Sbjct: 333 TTTS 336



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 106 AAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA----RAGTGFP 161
           AAP   S + P+PP SSA P       P   A    P  +  P     A     A T  P
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAP-PTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225

Query: 162 FFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPT--SSPSCSEGNGESAGNDPNCQPAPL 219
                 P     PP  +    A    SA   +     +PS +  +  SA   P    AP 
Sbjct: 226 PSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPP 285

Query: 220 QPALALLKTSSSHQSLASPYPESPAQFNISSEN 252
            P      ++++    +SP P+      I++ N
Sbjct: 286 TP------SATTPAPPSSPAPQETTAAPITTPN 312


>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
          Length = 377

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 49/184 (26%), Positives = 63/184 (34%), Gaps = 23/184 (12%)

Query: 63  AAPPKDAEDRARPASGLRGARVLSEGREPRASLRV---QVRPGLDVAAPGVCSLSCPSPP 119
           AAPP  +     P S        +    P A+ +       P    AAP     + P+PP
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPP 226

Query: 120 RSSAHP----GPRGP--LFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTR 173
            SSA P     P  P    PA L++ A P    VP       A T  P      P     
Sbjct: 227 SSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP---PTPSATTLDPSSASAPPETTAA 283

Query: 174 PPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQ 233
           PP            SA   +P SSP+  E         PN  P  L P  +    + +HQ
Sbjct: 284 PPT----------PSATTPAPPSSPAPQETTAAPI-TTPNSSPTTLAPDTSETSAAPTHQ 332

Query: 234 SLAS 237
           +  S
Sbjct: 333 TTTS 336



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 106 AAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA----RAGTGFP 161
           AAP   S + P+PP SSA P       P   A    P  +  P     A     A T  P
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAP-PTPSATTQAPPSSSAPPETTAAPPTPPATTPAP 225

Query: 162 FFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPT--SSPSCSEGNGESAGNDPNCQPAPL 219
                 P     PP  +    A    SA   +     +PS +  +  SA   P    AP 
Sbjct: 226 PSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPP 285

Query: 220 QPALALLKTSSSHQSLASPYPESPAQFNISSEN 252
            P      ++++    +SP P+      I++ N
Sbjct: 286 TP------SATTPAPPSSPAPQETTAAPITTPN 312


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 39/130 (30%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 112 SLSCPSPPRSSAHPGPRGPLFPA-----LLAALARPHG---AEVPGRRARARAGTGFPFF 163
           +LS P P + S  P   GP   +     +LAA   P G   A  P  R  AR  +  P  
Sbjct: 221 TLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRK 280

Query: 164 PGPDPRPRTRPPAHARGAHAHRGGSA-----WKRSPT-------SSPSCSEGNGESAGND 211
           P P   P    P  A      R   A     WK  P        S+PS S G  + A   
Sbjct: 281 PSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPA 340

Query: 212 PNCQPAPLQP 221
           P+  P P +P
Sbjct: 341 PSVSPGPWKP 350


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 51/192 (26%), Positives = 67/192 (34%), Gaps = 41/192 (21%)

Query: 55  PSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLS 114
           P A  LG A PP       +P+S   G + L++                    PGV    
Sbjct: 361 PPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ-------------------PPGV---- 397

Query: 115 CPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRP 174
                  +  PGP  P  P       +P  A+ PG ++ A+A       PGP   P  +P
Sbjct: 398 ---GKTPAQQPGPAKP--PTQQVGTPKPL-AQQPGLQSPAKA-------PGPTKTPVQQP 444

Query: 175 -PAHARGAHAHRG-GSAWKRSPTSSPSCSEGNGESAGNDPN-CQPAPLQPALALLKTSSS 231
            P       A  G  SA +  PT  PS   G  +     P   +P P QP  A  K  S 
Sbjct: 445 GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSA--KPPSQ 502

Query: 232 HQSLASPYPESP 243
                 P P+ P
Sbjct: 503 QPGSTKPPPQQP 514


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 51/192 (26%), Positives = 67/192 (34%), Gaps = 41/192 (21%)

Query: 55  PSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLS 114
           P A  LG A PP       +P+S   G + L++                    PGV    
Sbjct: 361 PPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ-------------------PPGV---- 397

Query: 115 CPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRP 174
                  +  PGP  P  P       +P  A+ PG ++ A+A       PGP   P  +P
Sbjct: 398 ---GKTPAQQPGPAKP--PTQQVGTPKPL-AQQPGLQSPAKA-------PGPTKTPVQQP 444

Query: 175 -PAHARGAHAHRG-GSAWKRSPTSSPSCSEGNGESAGNDPN-CQPAPLQPALALLKTSSS 231
            P       A  G  SA +  PT  PS   G  +     P   +P P QP  A  K  S 
Sbjct: 445 GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSA--KPPSQ 502

Query: 232 HQSLASPYPESP 243
                 P P+ P
Sbjct: 503 QPGSTKPPPQQP 514


>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
          Length = 360

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 80  RGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLF------P 133
           RGAR    G   R        P LDV++     L     PR    P P  P F       
Sbjct: 6   RGARSAGAGSPARPP-----SPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60

Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178
           + L    R  G    GR   A AG+G P  PGP  R R RP A A
Sbjct: 61  SFLRTGVRG-GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPA 104


>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
           sapiens]
          Length = 363

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 14/193 (7%)

Query: 70  EDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRG 129
           +DR     GL   RV    R  R +  ++  P  D+  P V SL+  +P  SS  P  R 
Sbjct: 94  QDRESAGEGLGPRRVKPSPR--RETFVLKDSPVRDLL-PTVNSLTRSTPSPSSLTPRLRS 150

Query: 130 PLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSA 189
                 + AL    G      +  +     FP    P   P TR     RG     G +A
Sbjct: 151 NDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA 210

Query: 190 WKRSPTSSPSCSEGNGESAG-------NDPNCQPAPLQPALALLKTSSSHQSLASPYPES 242
                 ++     G+GE  G         P   P P++  LA   ++S+ Q L  P P+ 
Sbjct: 211 ASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRL--PRPQG 268

Query: 243 PAQFNISSENLPV 255
            A    SS  LP+
Sbjct: 269 AAA--KSSSQLPI 279


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 116 PSPPRSSAHPGPRGPLFPALLAALARPHGAEV-------PGRRARARAGTGFPFFPGPDP 168
           P  P    H GP GP+ P LL     P G +        P R    R G G    PGP P
Sbjct: 647 PGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPG----PGPGP 702

Query: 169 RPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
             R R           RGG+  +  P   P      G S G  PN +  P
Sbjct: 703 YHRGR---------GGRGGN--EPPPPPPPFRGARGGRSGGGPPNGRGGP 741


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 56/182 (30%), Positives = 69/182 (37%), Gaps = 34/182 (18%)

Query: 56  SASALGLAAPPKDAEDRARPASGLR-------GARVLSEGREPRASLRVQVRPGLDVAAP 108
           SA+A G A  P      A P+   R        A  +  G  PR        PGL   A 
Sbjct: 678 SAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHG-SPRTRDPTPRPPGLPEEAT 736

Query: 109 GVCSLSCPSPPRSSAHPGPRGPL-------FPALLAALARPHGAEVPGR-RARARAGTGF 160
              +L+ PSPPR+ A   PR PL        PA  A  A    A+V G+ R+  RA    
Sbjct: 737 ---ALAAPSPPRARARAAPR-PLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVA- 791

Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNG-ESAGNDPNCQPAPL 219
                  PR +  PP  A+        S    SP  +P  +E  G E A  D    PAP 
Sbjct: 792 --LGAQGPREKPAPPQKAK-------RSVPPASPARAPPATETPGPEKAATD---LPAPE 839

Query: 220 QP 221
            P
Sbjct: 840 TP 841



 Score = 31.6 bits (70), Expect = 0.71
 Identities = 49/191 (25%), Positives = 67/191 (35%), Gaps = 31/191 (16%)

Query: 55  PSASALGLAAPPKDAEDRARPASGLRGARVLSEGREPRASL-----RVQVRPGLDVAAPG 109
           P+ S + L  P    E    PAS     R  S    P  +L     R + RP       G
Sbjct: 588 PAPSPVPLTTPASAEEAIPLPASS-DSERSASSVEGPGGALYARVARREARPARARGEIG 646

Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPR 169
             SLS PSP R    P P  P          +P  + + G+ + A AG      P P P 
Sbjct: 647 GLSLS-PSPERRK--PPPPDPA--------TKPKVSWIHGKHSAAAAGRA----PSPPPP 691

Query: 170 PRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTS 229
                     G+ A    S  KR+P+   + +  +G     DP  +P  L      L   
Sbjct: 692 ----------GSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAP 741

Query: 230 SSHQSLASPYP 240
           S  ++ A   P
Sbjct: 742 SPPRARARAAP 752


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,495,608
Number of Sequences: 37866
Number of extensions: 871803
Number of successful extensions: 5295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 674
Number of HSP's that attempted gapping in prelim test: 4381
Number of HSP's gapped (non-prelim): 1461
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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