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Search of human proteins with 116292180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens] 543 e-155
gi|19526475 outer dense fiber of sperm tails 3 [Homo sapiens] 232 3e-61
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 125 3e-29
gi|28557703 outer dense fiber of sperm tails 3-like 1 [Homo sapi... 113 2e-25
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 41 0.001
gi|112421108 capicua homolog [Homo sapiens] 39 0.003
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 39 0.006
gi|31543543 retinoic acid induced 17 [Homo sapiens] 38 0.010
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.016
gi|30794260 hypothetical protein LOC90529 [Homo sapiens] 37 0.022
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] 36 0.037
gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens] 36 0.037
gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens] 36 0.037
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 36 0.037
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 36 0.037
gi|33457324 hypothetical protein LOC285555 [Homo sapiens] 35 0.048
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 35 0.063
gi|55750053 atrophin-1 [Homo sapiens] 35 0.082
gi|55750041 atrophin-1 [Homo sapiens] 35 0.082
gi|115511036 alpha-kinase 3 [Homo sapiens] 34 0.11
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 34 0.11
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 34 0.11
gi|124248531 hypothetical protein LOC441476 [Homo sapiens] 34 0.11
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 34 0.14
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 34 0.14
gi|17402900 far upstream element-binding protein [Homo sapiens] 33 0.18
gi|33286446 opioid growth factor receptor [Homo sapiens] 33 0.24
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 33 0.24
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens] 33 0.24
gi|58331144 proline rich region 18 [Homo sapiens] 33 0.24
>gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens]
Length = 253
Score = 543 bits (1399), Expect = e-155
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MGSDAWVGLWRPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQ 60
MGSDAWVGLWRPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQ
Sbjct: 1 MGSDAWVGLWRPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQ 60
Query: 61 QTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSA 120
QTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSA
Sbjct: 61 QTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSA 120
Query: 121 PRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSK 180
PRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSK
Sbjct: 121 PRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSK 180
Query: 181 TPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRH 240
TPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRH
Sbjct: 181 TPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRH 240
Query: 241 SDYLAPLVTDADN 253
SDYLAPLVTDADN
Sbjct: 241 SDYLAPLVTDADN 253
>gi|19526475 outer dense fiber of sperm tails 3 [Homo sapiens]
Length = 254
Score = 232 bits (591), Expect = 3e-61
Identities = 117/256 (45%), Positives = 157/256 (61%), Gaps = 6/256 (2%)
Query: 1 MGSDAWVGLWRPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQ 60
M + W+G WRPHRPRGPI A Y PGPKY +PP TG+ H P++ RAPA++F
Sbjct: 1 MTEEVWMGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLL 60
Query: 61 QTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSA 120
C PGP + V ++ G D PAYSI GR ++ LTPGPG YFPE++ + SA
Sbjct: 61 AENCSPGPRYNVNPKILRTGKDLGPAYSILGR-YQTKTMLTPGPGDYFPEKSTKYVFDSA 119
Query: 121 PRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSK 180
P H+I+ R + + +PGPAAY +P ++GP +GK S P+ SI GR G F +DL K
Sbjct: 120 PSHSISARTKAFRVD-STPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHK 178
Query: 181 TPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVDQ--HRKPRG--WSF 236
TPGP AY+ V K +APQ+T+ AR P D T KPGP A++ ++ KP +F
Sbjct: 179 TPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTF 238
Query: 237 GIRHSDYLAPLVTDAD 252
GI+HSDY+ PL+ D +
Sbjct: 239 GIKHSDYMTPLLVDVE 254
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 125 bits (315), Expect = 3e-29
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 12/225 (5%)
Query: 25 GPGPKYKLPPNTGYALHDPSRPRAPAFTFGAR---FPTQQTTCGPGPGHLVPARMTVRGT 81
GPG Y LP G+ HD +R +PA++ R P Q T+ PGP + + ++T G
Sbjct: 45 GPG-LYVLPSTVGFINHDCTRVASPAYSLVRRPSEAPPQDTS--PGPIYFLDPKVTRFGR 101
Query: 82 DGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNWGVQAEQQSPGP 141
PAYS+ GR + P +TPGPG Y PE+ + + P T+ R + +P P
Sbjct: 102 SCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPVRHRTPPAFTLGCRLPLKPLDTSAPAP 161
Query: 142 AAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGVYKSRAPQ 201
AYT+P L G ++ K S+P+ ++ GR +D ++ PGP Y Y+ R P
Sbjct: 162 NAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPA 221
Query: 202 FTILARTSLPQDNTRKPGPAAY-----NVDQHRKPRGWSFGIRHS 241
FT+L R P+ PGP A+ V++ R P +S GIRHS
Sbjct: 222 FTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAP-AFSMGIRHS 265
Score = 32.3 bits (72), Expect = 0.41
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 128 RNWGVQAEQQSPGPAAYTVPSLLG--PRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPC 185
++ G + GP Y +PS +G +V++P S+ RR + + +D S PGP
Sbjct: 33 KSCGTATLENGSGPGLYVLPSTVGFINHDCTRVASPAYSLV-RRPSEAPPQDTS--PGPI 89
Query: 186 AYQVVSPGVY---KSRAPQFTILARTSLPQDNTRKPGPAAYNVD-----QHRKPRGWSFG 237
+ + P V +S P +++ R + PGP AY+ + +HR P ++ G
Sbjct: 90 YF--LDPKVTRFGRSCTPAYSMQGRAK-SRGPEVTPGPGAYSPEKVPPVRHRTPPAFTLG 146
Query: 238 IRHSDYLAPLVTDA 251
R L PL T A
Sbjct: 147 CRLP--LKPLDTSA 158
>gi|28557703 outer dense fiber of sperm tails 3-like 1 [Homo
sapiens]
Length = 274
Score = 113 bits (282), Expect = 2e-25
Identities = 78/239 (32%), Positives = 116/239 (48%), Gaps = 8/239 (3%)
Query: 19 IAAHYGGPGP-KYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTC--GPGPGHLVPAR 75
I A GPGP KY P TGY HD S +APA+T +R ++ C PGP +L+ +
Sbjct: 34 IMAKIKGPGPAKYLRPSCTGYIDHDISMFKAPAYTLHSRHSEKRMVCHSSPGPCYLLDPK 93
Query: 76 MTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNWGVQAE 135
+T G P + R T +Y+ E+ AP++T R +
Sbjct: 94 ITRFGMSSCPQVPMEERISNLRLNPTLASCQYYFEKIHPPGERRAPQYTFGYRR-PYRVM 152
Query: 136 QQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGVY 195
+P P Y +P LLGP +AP S+ R + ED++ PGP Y P +Y
Sbjct: 153 DLNPAPNQYQMPLLLGPNTPVSRAAPCYSLASRDKNWFYKEDVAGGPGPTTYARPEPSIY 212
Query: 196 KSRAPQFTILARTSLPQDNTRKPGPAAYNVDQ--HRKPR--GWSFGIRHSDYLAPLVTD 250
++R+P +++ R + P D T +PGP ++ V Q KP ++ GI+HS +L PLV D
Sbjct: 213 QNRSPTYSMAKRFAYPLDLTPRPGPGSHEVQQVTVHKPHIPAFTMGIKHSLHLCPLVID 271
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 12 PHRPRGPIAAHYGGPGPKYKLP---PNTGYALHDPSRPRAPAFTFGARFPTQQTTCGP-G 67
P P GP GGP P +P P Y + P P +GA PT GP G
Sbjct: 87 PFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPR-PYGA--PTDPAAAGPLG 143
Query: 68 PGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAP 127
P + + G G P + P+ +PGP P P P T+ P
Sbjct: 144 PWGSMSSGPWAPGMGGQ-------YPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPP 196
Query: 128 RNWGVQAEQQS-----PGPAAYTVPS 148
WG A + P P Y PS
Sbjct: 197 GAWGPPAPYPAPTGSYPTPGLYPTPS 222
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 39.3 bits (90), Expect = 0.003
Identities = 55/189 (29%), Positives = 73/189 (38%), Gaps = 35/189 (18%)
Query: 26 PGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARM-TVRGTDGA 84
P P +LPP A P P AF G+ PT P P+ + TV +
Sbjct: 1074 PVPSPQLPP----ACAAPGGPVITAFYSGSPAPTSSAPLAQ-PSQAPPSLVYTVATSTTP 1128
Query: 85 PAYSIYGRPRRSAPFLTPGPGRYFPER-AGNATYPSAPRHTIAPRNWGVQAEQQSPGPAA 143
PA +I + + TP P FP AG+ TY +AP+ Q P P A
Sbjct: 1129 PAATILPKGPPAPATATPAPTSPFPSATAGSMTYS-----LVAPK-------AQRPSPKA 1176
Query: 144 YTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPG-VYKSRAPQF 202
P+ KV A SI GSF S PGP Q + PG V + AP+
Sbjct: 1177 --------PQ---KVKAAIASI----PVGSFEAGASGRPGPAPRQPLEPGPVREPTAPES 1221
Query: 203 TILARTSLP 211
+ + + P
Sbjct: 1222 ELEGQPTPP 1230
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 0.006
Identities = 46/155 (29%), Positives = 57/155 (36%), Gaps = 15/155 (9%)
Query: 42 DPSRPRAPAFT------FGARFPTQQTTCGPGP-GHLVPARMTVRGTDGAPAYSIYGRPR 94
+P P +P F GA +Q T GP H AR R A ++ R
Sbjct: 170 EPLPPSSPGFRPSSYPCSGASTSSQATQPGPALLSHASEARPATRSRITLVASALRRRAS 229
Query: 95 RSAPFL---TPGPGRYFPERAGNATYPS-APRHTIAPRNWGVQAEQQSPGPAAYTVPSLL 150
P + T PG FP RA + +P P G PGPA S
Sbjct: 230 GPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRG---RASVPGPARRGCDSAP 286
Query: 151 GPRVIGKVSAPTCSIYGRRAA-GSFFEDLSKTPGP 184
GP G+ SAP + GR +A GS PGP
Sbjct: 287 GPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGP 321
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 37.7 bits (86), Expect = 0.010
Identities = 43/143 (30%), Positives = 55/143 (38%), Gaps = 22/143 (15%)
Query: 15 PRGPIAAHYGGPGPKYKLPPNTGYALHDP----SRPRAPAF----TFGARFPTQQTTCGP 66
PRGP A+ G P T + P ++PR P T G R P QQT GP
Sbjct: 336 PRGP-ASMGGSMNPASMAAGMTPSGMSGPPMGMNQPRPPGISPFGTHGQRMP-QQTYPGP 393
Query: 67 GPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIA 126
P L P + R G P Y G + GP FP + G P+ PR +
Sbjct: 394 RPQSL-PIQNIKRPYPGEPNY---GNQQY-------GPNSQFPTQPGQYPAPNPPRPLTS 442
Query: 127 PRNWGVQAEQQSPGPAAYTVPSL 149
P N+ Q P Y P++
Sbjct: 443 P-NYPGQRMPSQPSSGQYPPPTV 464
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.016
Identities = 38/142 (26%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 11 RPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGH 70
RP +GP G PGP +P G DP P P P +C GP +
Sbjct: 97 RPPNGQGPQGPK-GDPGPP-GIPGRNG----DPGIPGQPGSPGSPGPPGICESCPTGPQN 150
Query: 71 LVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNW 130
P + G + G P + P PGP P +G+ P +P + P
Sbjct: 151 YSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGP----PGTSGHPGSPGSPGYQGPPGEP 206
Query: 131 GVQAEQQSPGPAAYTVPSLLGP 152
G PGP P +GP
Sbjct: 207 GQAGPSGPPGP-----PGAIGP 223
>gi|30794260 hypothetical protein LOC90529 [Homo sapiens]
Length = 287
Score = 36.6 bits (83), Expect = 0.022
Identities = 38/140 (27%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 65 GPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLT--PGPGRYFPERAGNATYPSAPR 122
GP PGH V+ + + R + PGPG Y P P+
Sbjct: 140 GPPPGHYDINESLVKQSPNTLMSCFKSKTNRGLKLTSTGPGPGYYNPSDC-----TKVPK 194
Query: 123 HTIAPRNWGVQAEQQS---------PGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGS 173
T+ P+N + Q PGP Y + LGPR SA S R A
Sbjct: 195 KTLFPKNPILNFSAQPSPLPPKPPFPGPGQYEIVDYLGPRKHFISSASFVSNTSRWTAAP 254
Query: 174 FFEDLSKTPGPCAYQVVSPG 193
L PGP Y+ PG
Sbjct: 255 PQPGL---PGPATYKPELPG 271
>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 35.8 bits (81), Expect = 0.037
Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 33 PPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGR 92
PP T L P+A A T + T Q P AP+ G
Sbjct: 428 PPRTATGLGSKEAPKATAETAATKTATLQPRVNLQP---------------APSSPFLG- 471
Query: 93 PRRSAPFLTPGPGRYFPERAGNATY------PSAPRHTIAPRNWGVQAEQQSPGPAAYTV 146
P + P L PGP + P R G+ T+ +PR + P + + + P
Sbjct: 472 PAQGCPVLQPGPPIHVPGRPGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQ 531
Query: 147 PSLLGPRV 154
P GP+V
Sbjct: 532 PEGQGPQV 539
>gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.037
Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 33 PPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGR 92
PP T L P+A A T + T Q P AP+ G
Sbjct: 396 PPRTATGLGSKEAPKATAETAATKTATLQPRVNLQP---------------APSSPFLG- 439
Query: 93 PRRSAPFLTPGPGRYFPERAGNATY------PSAPRHTIAPRNWGVQAEQQSPGPAAYTV 146
P + P L PGP + P R G+ T+ +PR + P + + + P
Sbjct: 440 PAQGCPVLQPGPPIHVPGRPGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQ 499
Query: 147 PSLLGPRV 154
P GP+V
Sbjct: 500 PEGQGPQV 507
>gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 35.8 bits (81), Expect = 0.037
Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 33 PPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGR 92
PP T L P+A A T + T Q P AP+ G
Sbjct: 428 PPRTATGLGSKEAPKATAETAATKTATLQPRVNLQP---------------APSSPFLG- 471
Query: 93 PRRSAPFLTPGPGRYFPERAGNATY------PSAPRHTIAPRNWGVQAEQQSPGPAAYTV 146
P + P L PGP + P R G+ T+ +PR + P + + + P
Sbjct: 472 PAQGCPVLQPGPPIHVPGRPGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQ 531
Query: 147 PSLLGPRV 154
P GP+V
Sbjct: 532 PEGQGPQV 539
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.8 bits (81), Expect = 0.037
Identities = 62/224 (27%), Positives = 81/224 (36%), Gaps = 28/224 (12%)
Query: 11 RPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFG--ARFPTQQTTCGPGP 68
RP R RG I P P+ + PP DP+ ++ G + + P P
Sbjct: 637 RPARARGEIGGLSLSPSPERRKPPPP-----DPATKPKVSWIHGKHSAAAAGRAPSPPPP 691
Query: 69 GHLV---PARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAP--RH 123
G P++ +D + +G PR P P PG PE A PS P R
Sbjct: 692 GSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRP-PG--LPEEATALAAPSPPRARA 748
Query: 124 TIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPG 183
APR G ++SP A S+L V GK + GR + + P
Sbjct: 749 RAAPRPLGAHGRRRSPAKRA-EAASMLAADVRGKTRS-----LGRAEVALGAQGPREKPA 802
Query: 184 PCAYQVVS-PGVYKSRAPQFTIL-----ARTSLPQDNT-RKPGP 220
P S P +RAP T A T LP T RK P
Sbjct: 803 PPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTP 846
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.8 bits (81), Expect = 0.037
Identities = 62/224 (27%), Positives = 81/224 (36%), Gaps = 28/224 (12%)
Query: 11 RPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFG--ARFPTQQTTCGPGP 68
RP R RG I P P+ + PP DP+ ++ G + + P P
Sbjct: 632 RPARARGEIGGLSLSPSPERRKPPPP-----DPATKPKVSWIHGKHSAAAAGRAPSPPPP 686
Query: 69 GHLV---PARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAP--RH 123
G P++ +D + +G PR P P PG PE A PS P R
Sbjct: 687 GSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRP-PG--LPEEATALAAPSPPRARA 743
Query: 124 TIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPG 183
APR G ++SP A S+L V GK + GR + + P
Sbjct: 744 RAAPRPLGAHGRRRSPAKRA-EAASMLAADVRGKTRS-----LGRAEVALGAQGPREKPA 797
Query: 184 PCAYQVVS-PGVYKSRAPQFTIL-----ARTSLPQDNT-RKPGP 220
P S P +RAP T A T LP T RK P
Sbjct: 798 PPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPRKKTP 841
>gi|33457324 hypothetical protein LOC285555 [Homo sapiens]
Length = 459
Score = 35.4 bits (80), Expect = 0.048
Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 21/147 (14%)
Query: 101 TPGPGRY----------FPERAGNATYPSAPRHTIAPRNWGVQAEQQSPGPAAYTVPSLL 150
TPGP Y + N T A + A R V + P P +Y V
Sbjct: 304 TPGPADYQEFWHSQGVGISDELPNLTNKYAAFLSRAKRTMKVP-DMVIPAPGSYDVHKSY 362
Query: 151 GPRVIGKVSAPTCSIYGRRAAGSFF-------EDLSKTPGPCAYQVVSPGVYKSRAPQFT 203
+ P S+ +R SF E ++ PGP AY +P + KS
Sbjct: 363 EMSQVKHKYMPPRSLVAKRKHASFLSATPRCLEKVTDGPGPAAY---NPVLRKSCPIPLF 419
Query: 204 ILARTSLPQDNTRKPGPAAYNVDQHRK 230
+ A + PGPA Y + Q +K
Sbjct: 420 VKASKRFEESKEITPGPATYEISQEKK 446
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 35.0 bits (79), Expect = 0.063
Identities = 50/166 (30%), Positives = 63/166 (37%), Gaps = 31/166 (18%)
Query: 12 PHRPRG-------PIAAHYGGPG----PKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQ 60
P PRG P YG PG P PP A+ P P P P +
Sbjct: 67 PAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPS-AVGKPGVPGLPGK------PGE 119
Query: 61 QTTCGPGPGHLVPARMT-VRGTDGAPAY------SIYGRPRRSAPFLTPGPGRYFPERAG 113
+ GP G + PA + RG G P S+ G+P + P PGP R FP G
Sbjct: 120 RGPYGP-KGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGP-RGFPGEKG 177
Query: 114 NATYP--SAPRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGK 157
P + + + G E+ PGP T PS GP +GK
Sbjct: 178 APGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPS--GPPGVGK 221
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.082
Identities = 49/190 (25%), Positives = 67/190 (35%), Gaps = 41/190 (21%)
Query: 22 HYG--GPGPKYKLP-PNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTV 78
H+G GP P P P G + H + P A + + G+ P PGP HL P V
Sbjct: 503 HHGNSGPPPPGAFPHPLEGGSSHH-AHPYAMSPSLGSLRPYP-----PGPAHLPPPHSQV 556
Query: 79 R----GTDGAP----AYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNW 130
G +G P + S + S P P P + + +P P T +
Sbjct: 557 SYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQGAPYPFPPVPTVTTSSATL 614
Query: 131 GVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVV 190
+ PA Y S GP YG+RA P P AY+
Sbjct: 615 STVIATVASSPAGYKTASPPGPPP-----------YGKRA-----------PSPGAYKTA 652
Query: 191 SPGVYKSRAP 200
+P YK +P
Sbjct: 653 TPPGYKPGSP 662
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.082
Identities = 49/190 (25%), Positives = 67/190 (35%), Gaps = 41/190 (21%)
Query: 22 HYG--GPGPKYKLP-PNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTV 78
H+G GP P P P G + H + P A + + G+ P PGP HL P V
Sbjct: 503 HHGNSGPPPPGAFPHPLEGGSSHH-AHPYAMSPSLGSLRPYP-----PGPAHLPPPHSQV 556
Query: 79 R----GTDGAP----AYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNW 130
G +G P + S + S P P P + + +P P T +
Sbjct: 557 SYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQGAPYPFPPVPTVTTSSATL 614
Query: 131 GVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVV 190
+ PA Y S GP YG+RA P P AY+
Sbjct: 615 STVIATVASSPAGYKTASPPGPPP-----------YGKRA-----------PSPGAYKTA 652
Query: 191 SPGVYKSRAP 200
+P YK +P
Sbjct: 653 TPPGYKPGSP 662
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 34.3 bits (77), Expect = 0.11
Identities = 64/230 (27%), Positives = 80/230 (34%), Gaps = 48/230 (20%)
Query: 12 PHRPRGPIAAHYG--------GPGPKYKLPPNTGYALHDPSR-----PRAPAFTFGARFP 58
P RPRGP+ H G GPG K G LHD PR P R+
Sbjct: 55 PARPRGPLICHTGHEQAGREPGPGSSTK-----GPVLHDQDTRCAFLPRPPGPLQTRRYC 109
Query: 59 TQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYP 118
Q G G G A G GR R PG G+ ++ A P
Sbjct: 110 RHQGRQGSGLGAGPGAGTWAPAPPGVSKPRCPGRAR-------PGEGQ---QQVTTARPP 159
Query: 119 SAPRHTIAPRNWGVQAEQQSPGPAAY---TVPSLLGPRV-----IGKVSAPT--CSIYGR 168
+ R PR G A + PG A+ + GP V +G AP+ GR
Sbjct: 160 AINRGARQPRA-GAAAAGRGPGAGAWRTGEAAASAGPAVGEGGAMGSRRAPSRGWGAGGR 218
Query: 169 RAAGSFFEDLSKTPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKP 218
AG ED GP + SP SR+ ++ TSL + P
Sbjct: 219 SGAGGDGED----DGP--VWIPSPA---SRSYLLSVRPETSLSSNRLSHP 259
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 34.3 bits (77), Expect = 0.11
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 14 RPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGH-LV 72
RP P++ P P++ PR P FG FP Q+T GP P L
Sbjct: 1874 RPGFPVSLPLAYPPPQFAHALLAAQTFQQIRPPRLPMTHFGGTFPPAQSTWGPFPVRPLS 1933
Query: 73 PARMT 77
PAR T
Sbjct: 1934 PARAT 1938
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
Length = 2352
Score = 34.3 bits (77), Expect = 0.11
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 14 RPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPGH-LV 72
RP P++ P P++ PR P FG FP Q+T GP P L
Sbjct: 1623 RPGFPVSLPLAYPPPQFAHALLAAQTFQQIRPPRLPMTHFGGTFPPAQSTWGPFPVRPLS 1682
Query: 73 PARMT 77
PAR T
Sbjct: 1683 PARAT 1687
>gi|124248531 hypothetical protein LOC441476 [Homo sapiens]
Length = 308
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 138 SPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVV------- 190
S P +T L G R +G P + A + PGP Y ++
Sbjct: 191 SKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPG-----KRCPGPNTYNILPGSRLQS 245
Query: 191 --SPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVD 226
SP SR+P FT TS R PGPAAY+V+
Sbjct: 246 PRSPAFSMSRSPAFTSWLSTS------RTPGPAAYHVE 277
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 33.9 bits (76), Expect = 0.14
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 42 DPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLT 101
D S P AP R TC P G PA + PA S R+ P
Sbjct: 219 DDSEPDAP------RLLPSPVTCTPKEGETPPAPAALSSPLAVPALSASSLSSRAPP--- 269
Query: 102 PGPGRYFPERAGNATYPSAPRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVS 159
P R P+ + P A + T A + G QA Q +P PA + +GP+ I K +
Sbjct: 270 PAEVRVQPQLSRT---PQAAQQTEALASTGSQA-QSAPTPAWDEDTAQIGPKRIRKAA 323
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 33.9 bits (76), Expect = 0.14
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 42 DPSRPRAPAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLT 101
D S P AP R TC P G PA + PA S R+ P
Sbjct: 224 DDSEPDAP------RLLPSPVTCTPKEGETPPAPAALSSPLAVPALSASSLSSRAPP--- 274
Query: 102 PGPGRYFPERAGNATYPSAPRHTIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVS 159
P R P+ + P A + T A + G QA Q +P PA + +GP+ I K +
Sbjct: 275 PAEVRVQPQLSRT---PQAAQQTEALASTGSQA-QSAPTPAWDEDTAQIGPKRIRKAA 328
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 33.5 bits (75), Expect = 0.18
Identities = 41/148 (27%), Positives = 49/148 (33%), Gaps = 37/148 (25%)
Query: 12 PHRPRGPIAAH--YGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGPG 69
P P GP H +G PGP H P P P G P PGP
Sbjct: 450 PVNPLGPPVPHGPHGVPGP------------HGPPGPPGPGTPMGPYNPAPYNPGPPGPA 497
Query: 70 -HLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYF--PERAGNATY--------- 117
H PA +G A Y ++ AP P P + P A A Y
Sbjct: 498 PHGPPAPYAPQGWGNA-----YPHWQQQAP---PDPAKAGTDPNSAAWAAYYAHYYQQQA 549
Query: 118 ---PSAPRHTIAPRNWGVQAEQQSPGPA 142
P+AP Q +QQ+P PA
Sbjct: 550 QPPPAAPAGAPTTTQTNGQGDQQNPAPA 577
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 33.1 bits (74), Expect = 0.24
Identities = 43/144 (29%), Positives = 51/144 (35%), Gaps = 15/144 (10%)
Query: 12 PHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGP---GP 68
P GP A G P G RP PA A P++ T GP GP
Sbjct: 518 PSETPGPSPAGPAGDEPAESPSETPG------PRPAGPAGDEPAESPSE--TPGPRPAGP 569
Query: 69 GHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPR 128
PA +PA P S P TPGP P AG+ S P T PR
Sbjct: 570 AGDEPAESPSETPGPSPAGPTRDEPAES-PSETPGPRPAGP--AGDEPAES-PSETPGPR 625
Query: 129 NWGVQAEQQSPGPAAYTVPSLLGP 152
G ++ + P+ PS GP
Sbjct: 626 PAGPAGDEPAESPSETPGPSPAGP 649
Score = 31.2 bits (69), Expect = 0.91
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 80 GTDGAPAYSIYGRPRRSA-------PFLTPGPGRYFPERAGNATYPSAPRHTIAPRNWGV 132
GT G+P+ + P A P TPGP P AG+ S P T PR G
Sbjct: 513 GTPGSPSETPGPSPAGPAGDEPAESPSETPGPRPAGP--AGDEPAES-PSETPGPRPAGP 569
Query: 133 QAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSF----FEDLSKTPGP 184
++ + P+ PS GP +P+ G R AG E S+TPGP
Sbjct: 570 AGDEPAESPSETPGPSPAGPTRDEPAESPS-ETPGPRPAGPAGDEPAESPSETPGP 624
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 33.1 bits (74), Expect = 0.24
Identities = 48/179 (26%), Positives = 63/179 (35%), Gaps = 28/179 (15%)
Query: 11 RPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPT------QQTTC 64
RP R P + G P P L G L P A F RFP Q
Sbjct: 385 RPAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVPAEAAPRDFCQRFPALEPSPRQPPAR 444
Query: 65 GPGPGHLVPARMTVRGTDGAP-AYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRH 123
P P +PA + D P A +Y P P+ R P R ++P+A R
Sbjct: 445 APRPSPDLPAPL-----DACPWAPPVYAPPAAPGPYAAWTSSR--PARPAPLSHPTA-RA 496
Query: 124 TIAPRNWGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGS-FFEDLSKT 181
PR G A +Q + +P P++ G +YG GS + SKT
Sbjct: 497 FQVPRRPGHAARRQ----FSVKMPETFNPQLPG--------LYGSAGRGSRYLRTNSKT 543
>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
Length = 368
Score = 33.1 bits (74), Expect = 0.24
Identities = 60/213 (28%), Positives = 75/213 (35%), Gaps = 28/213 (13%)
Query: 12 PHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAF--TFGARFPTQQTTCGPGPG 69
P RP P A G PG + L + H S+ P + T G R GP G
Sbjct: 169 PFRPAAPKA---GPPGLVHPLFSPS----HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG 221
Query: 70 HLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRN 129
L +R G + + G P S PFL GP Y G P P P
Sbjct: 222 -LNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEY-----GLGDPPPPPGLLQPPTL 275
Query: 130 WGVQAEQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSF-FEDLSKTPGPCAYQ 188
Q + PA + PS G R +G+ PT S E LS PG
Sbjct: 276 APWQPSRGDGPPAVSSQPS--GGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPG----- 328
Query: 189 VVSPGVYKSRAPQFTILARTSLPQDNTRKPGPA 221
PG + P +LAR+ +PGPA
Sbjct: 329 --GPGDFPKTFPYPLLLARSLA---EPLRPGPA 356
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.24
Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 30/163 (18%)
Query: 11 RPHRPRG--PIAAHYGGPGPKYKLPPNTGYALHDPSRPRAPAFTFGARFPTQQTTCGPGP 68
+P P G P A P PP + H P+R A + G T+ G GP
Sbjct: 68 QPPAPPGVSPQALPSRARAPATCAPPRPAGSGHSPARTTYAATSAGTGTTAAGTSSGAGP 127
Query: 69 GHLVPARMTVRGTDGAPAY--------SIYGRPRRSAPFLTPGPGRYF----------PE 110
AR + T A + RPRR P + P R P
Sbjct: 128 CPDSAARFCLNLTPEAVLVIQKRHLEKQLLARPRRPFPSPSAEPRRLLAPCLPARAAGPR 187
Query: 111 RAGNATYPSAP------RHTIAP----RNWGVQAEQQSPGPAA 143
R G A+ P AP R P + G+Q Q SP P A
Sbjct: 188 RGGPASDPDAPPTAGQGRRAPPPGAQLLHGGLQVPQLSPRPGA 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,520,630
Number of Sequences: 37866
Number of extensions: 943538
Number of successful extensions: 2670
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 2477
Number of HSP's gapped (non-prelim): 317
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.