Guide to the Human Genome
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Name: C1orf201 Sequence: fasta or formatted (287aa) NCBI GI: 30794260
Description:

hypothetical protein LOC90529

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         17           2
 C cysteine            2.8          8           2
 D aspartate           3.5         10           1
 E glutamate           1.7          5           1
 F phenylalanine       5.9         17           1
 G glycine             5.9         17           1
 H histidine           1.0          3           1
 I isoleucine          4.2         12           2
 K lysine              8.7         25           2
 L leucine             5.9         17           1
 M methionine          2.4          7           1
 N asparagine          6.6         19           2
 P proline            13.2         38           3
 Q glutamine           3.1          9           1
 R arginine            3.1          9           1
 S serine             11.1         32           2
 T threonine           5.2         15           1
 V valine              4.2         12           1
 W tryptophan          0.7          2           1
 Y tyrosine            4.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90529 
C4orf37               0.038   hypothetical protein LOC285555 
MLL5                  0.028   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.028   myeloid/lymphoid or mixed-lineage leukemia 5 
C6orf132              0.022   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.022   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.022   PREDICTED: hypothetical protein LOC647024 
ODF3B                 0.021   outer dense fiber of sperm tails 3B 
ODF3L2                0.015   outer dense fiber of sperm tails 3-like 2 
CHD3                  0.015   chromodomain helicase DNA binding protein 3 isoform...
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
NHSL1                 0.014   NHS-like 1 
SEC24D                0.014   Sec24-related protein D 
EGR2                  0.014   early growth response 2 protein isoform b 
EGR2                  0.014   early growth response 2 protein isoform a 
EGR2                  0.014   early growth response 2 protein isoform a 
EGR2                  0.014   early growth response 2 protein isoform a 
ANXA11                0.014   annexin A11 
ANXA11                0.014   annexin A11 
ANXA11                0.014   annexin A11 
SON                   0.014   SON DNA-binding protein isoform F 
SON                   0.014   SON DNA-binding protein isoform B 
SHISA4                0.014   shisa homolog 4 
CCNK                  0.014   cyclin K isoform 1 
INF2                  0.012   inverted formin 2 isoform 2 
INF2                  0.012   inverted formin 2 isoform 1 
WASF3                 0.012   WAS protein family, member 3 
KIAA1522              0.012   hypothetical protein LOC57648 
LOC729537             0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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