Guide to the Human Genome
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Search of human proteins with 239741811

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
         (327 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo sap...   663   0.0  
gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo sap...   663   0.0  
gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo sap...   663   0.0  
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]       44   2e-04
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       43   3e-04
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu...    42   0.001
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre...    42   0.001
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    41   0.002
gi|55956788 nucleolin [Homo sapiens]                                   40   0.002
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     39   0.006
gi|42740903 MTERF domain containing 2 [Homo sapiens]                   39   0.008
gi|51477718 TATA box binding protein-associated factor, RNA poly...    39   0.008
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ...    38   0.011
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s...    38   0.011
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa...    38   0.011
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]                    38   0.014
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]            38   0.014
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]            38   0.014
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ...    38   0.014
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    38   0.014
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    38   0.014
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear...    37   0.018
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear...    37   0.018
gi|17975763 myelin transcription factor 1 [Homo sapiens]               37   0.018
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]                37   0.024
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]                 37   0.024
gi|110347463 human immunodeficiency virus type I enhancer bindin...    37   0.024
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    37   0.024
gi|13540523 nucleosomal binding protein 1 [Homo sapiens]               37   0.031
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H...    37   0.031

>gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score =  663 bits (1710), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
           MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60

Query: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
           GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120

Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
           VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180

Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
           GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240

Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
           MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300

Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
           EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327


>gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score =  663 bits (1710), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
           MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60

Query: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
           GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120

Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
           VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180

Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
           GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240

Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
           MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300

Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
           EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327


>gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo
           sapiens]
          Length = 327

 Score =  663 bits (1710), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
           MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1   MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60

Query: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
           GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61  GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120

Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
           VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180

Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
           GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240

Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
           MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300

Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
           EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327


>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
          Length = 4374

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 36/158 (22%)

Query: 181  GEVSKDAVIV--------KQEKNNEYCLQDIDDKLSESAEDDGEDD--TNDEDDDEDSNP 230
            GE   D+V++         QE   E  L+D+ D+L E     G      +   +DE    
Sbjct: 2321 GEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQED 2380

Query: 231  KKNTQAPLEL-MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKT 289
                +AP  L  A  L+A   RE  +         I +PE+ E              E T
Sbjct: 2381 VLMDEAPSNLSQASTLQAN--REDSMN--------ILDPEDEE--------------EHT 2416

Query: 290  QNHEQDGENSDE-DSSGESKGESDEELSDESSDEGEDG 326
            Q  +  G N DE DS  E + E ++E  D+  DEGE+G
Sbjct: 2417 QEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEG 2454



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 201  QDIDDKLSESAEDDGEDD---TNDEDDDEDSN 229
            QD +++  E  EDD EDD     DEDDD+D +
Sbjct: 2432 QDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGS 2463



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 203  IDDKLSESAEDD-GEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
            I ++LS+  E   GE+DT  E+      P+ N Q   +LM      E A E  L     +
Sbjct: 1287 IRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTME 1346

Query: 262  MILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSD 321
                Y   +P       ++ ++ + E+ Q       +  +D   + + ES EE++    +
Sbjct: 1347 QATEYLLTHP-PPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEE 1405

Query: 322  E 322
            E
Sbjct: 1406 E 1406



 Score = 28.9 bits (63), Expect = 6.5
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 1    MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
            M+TD PT   S    K  P+ AAR    +  +S +   SRLG     RA +      V  
Sbjct: 1022 METDEPTASDSKGKSKITPAMAARIKQIKPLLSAS---SRLG-----RALAELFGLLVKL 1073

Query: 61   GWSAEEGRQLVRHSEATTGLPLP---SPVCSLTQ----------PPQQTTPR 99
               +   ++   H+ +TT  P P   S   +LT+          PP   TPR
Sbjct: 1074 CVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPR 1125


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 148  SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
            S++ +K    +A      QG  ++ E ++E +  E   D     QEK  E    D+ D L
Sbjct: 4826 SQQDKKEEKEEAEADDGGQGEDKINEQIDERDYDENEVDPYHGNQEKVPEPEALDLPDDL 4885

Query: 208  SESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE 267
            +  +ED    +  D ++ E+ NP +  + P E   E   AE   E +  +   Q     E
Sbjct: 4886 NLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAGHE---AEERGETETDQNESQS--PQE 4940

Query: 268  PENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDE-DSSGESKGESDEELSDESSDEG 323
            PE   +++     EE +    T   +QDG+ +   +   E + +S EE   E+ +EG
Sbjct: 4941 PEEGPSEDDKAEGEEEM---DTGADDQDGDAAQHPEEHSEEQQQSVEEKDKEADEEG 4994



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 18/141 (12%)

Query: 190  VKQEKNNEYCLQDIDDK-----LSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEF 244
            +K E N     +D D K     L E  EDD + D+   D D+        +A  + + E 
Sbjct: 4720 IKGEDNAIEMSEDFDGKMHDGELEEQEEDDEKSDSEGGDLDKHMGDLNGEEA--DKLDER 4777

Query: 245  LRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSS 304
            L  +   E              E E+ + +E    ++E       ++   D  NS++D S
Sbjct: 4778 LWGDDDEEED-----------EEEEDNKTEETGPGMDEEDSELVAKDDNLDSGNSNKDKS 4826

Query: 305  GESKGESDEELSDESSDEGED 325
             + K E  EE   +   +GED
Sbjct: 4827 QQDKKEEKEEAEADDGGQGED 4847


>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
           precursor [Homo sapiens]
          Length = 513

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
           E  + V+ P + E S++A +  QE ++E      ++ +SES  D+ +  T+  +D EDS+
Sbjct: 328 EESQNVDGPSS-ESSQEANLSSQENSSE----SQEEVVSESRGDNPDPTTSYVEDQEDSD 382

Query: 230 PKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE--PENPEAKEFFTL--IEEMLL 285
             +   +     ++      +RE Q   +  + +   E  PE+PE +   +   ++    
Sbjct: 383 SSEEDSSHTLSHSK----SESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS 438

Query: 286 MEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
             ++Q+ E   E  D DS   S+ + D   ++  S   EDG
Sbjct: 439 SAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEEDG 479


>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
           precursor [Homo sapiens]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
           E  + V+ P + E S++A +  QE ++E      ++ +SES  D+ +  T+  +D EDS+
Sbjct: 312 EESQNVDGPSS-ESSQEANLSSQENSSE----SQEEVVSESRGDNPDPTTSYVEDQEDSD 366

Query: 230 PKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE--PENPEAKEFFTL--IEEMLL 285
             +   +     ++      +RE Q   +  + +   E  PE+PE +   +   ++    
Sbjct: 367 SSEEDSSHTLSHSK----SESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS 422

Query: 286 MEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
             ++Q+ E   E  D DS   S+ + D   ++  S   EDG
Sbjct: 423 SAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEEDG 463


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 28/158 (17%)

Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNE--YCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
           EL E   E +  +  ++ V VK  +NNE  +  +D   K  +  +   +D+ ++E +D+D
Sbjct: 61  ELEELSLEAQGIKADRETVAVKPTENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKD 120

Query: 228 SNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLME 287
           S  KK  +  +E+ +                           + +  +F  L ++     
Sbjct: 121 SKSKKTAKPKVEMYSG--------------------------SDDDDDFNKLPKKAKGKA 154

Query: 288 KTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
           +  N + DG   DED+S + K  S    S ES DE ++
Sbjct: 155 QKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESDE 192



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 58/212 (27%)

Query: 123 ARGRREGRMR---ATGVRLACGTLLPQ----WSEEVRKRLSLQARCTLDSQGGCELMETV 175
           AR R E  ++   A GV +     LP+    + ++ RK++  Q    L+S+   E+ E++
Sbjct: 415 ARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQ----LESK---EVSESM 467

Query: 176 NEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQ 235
                 EV +  V  K+E         ++ +  E  ED G DD      DE++   +  +
Sbjct: 468 ELCAAVEVMEQGVPEKEETP-----PPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNK 522

Query: 236 APLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQD 295
             +E+                            ENPE +E           E+ +  E+D
Sbjct: 523 VHIEVK---------------------------ENPEEEE-----------EEEEEEEED 544

Query: 296 GENSDEDSS-GESKGESDEELSDESSDEGEDG 326
            E+ +E+   GES+G   +E  ++ SDE + G
Sbjct: 545 EESEEEEEEEGESEGSEGDEEDEKVSDEKDSG 576



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 172 METVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGED----DTNDEDDDED 227
           +E    PE  E  ++    ++E++ E   ++ ++  SE +E D ED    D  D     D
Sbjct: 525 IEVKENPEEEEEEEE----EEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLD 580

Query: 228 SNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLI------- 280
             P K   +  E  ++  R +  R Y  AK+  +   +   +N   ++    I       
Sbjct: 581 KKPSKEMSSDSEYDSDDDRTKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPIICVLGHV 640

Query: 281 ---EEMLLMEKTQNHEQDGE 297
              +  +L +    H QDGE
Sbjct: 641 DTGKTKILDKLRHTHVQDGE 660



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 177 EPETGEVSKDAVIVKQEKNNEYCLQD---IDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
           E ETG+  +      Q K  E  ++    +D  +  ++E+  E  T  EDD+E    KK+
Sbjct: 258 ELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKD 317

Query: 234 TQAPLELMAEFLRAEMAREYQLAKKLCQMIL--IYEPENPEAKEFFTLIEEMLLMEKTQN 291
            +       E  + +     +   K  Q  L  + E E  + +E    I+ +  +E  + 
Sbjct: 318 KKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRK 377

Query: 292 HEQDGENSDEDSSGESKGESDEELSDE 318
            E+  E    +   + + E  E L  E
Sbjct: 378 EEERLEQEKRERKKQKEKERKERLKKE 404


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 28/116 (24%)

Query: 210 SAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
           S ++D EDD +DEDDD+D       +A     A+             KK  +++ +    
Sbjct: 184 SEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAK------------GKKAAKVVPV---- 227

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
             +AK           + + ++ E+D E+ D+D   + + + DE+  +E  +E E+
Sbjct: 228 --KAKN----------VAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEE 271



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
           E MET   P  G+ +   V VK +   E   ++ DD+  +  +DD EDD +D+D+D++  
Sbjct: 209 EAMETT--PAKGKKAAKVVPVKAKNVAEDEDEEEDDE--DEDDDDDEDDEDDDDEDDEEE 264

Query: 230 PKKNTQAPLELMAEFLRAEMARE 252
            ++  + P++      + EMA++
Sbjct: 265 EEEEEEEPVKEAPGKRKKEMAKQ 287



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 206 KLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILI 265
           K  +S E++ +D   DE+DDED +  ++   P  + A         E     +  +    
Sbjct: 141 KKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDD 200

Query: 266 YEPENPEAKEFFTLIEE-----MLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESS 320
            E ++ E +   T   +      ++  K +N  +D +  ++D   +   + D+E  D+  
Sbjct: 201 DEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDED 260

Query: 321 DEGED 325
           DE E+
Sbjct: 261 DEEEE 265


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 30/141 (21%)

Query: 208 SESAEDDGEDDTNDEDDDEDS--------NPKKNTQAPLELMAEFLRAEMAREYQLAKKL 259
           S + E+  +++   ED+D+++        + +K  +A  + M E    EM +E ++ KK 
Sbjct: 332 SPNEEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKK- 390

Query: 260 CQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSG-------------- 305
                  E E  E +E     EE  +  K +   +  +  DED  G              
Sbjct: 391 ------EEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGT 444

Query: 306 -ESKGESDEELSDESSDEGED 325
            E+ GE +EE  DE+ D+  D
Sbjct: 445 EETYGEVEEEPLDEAQDDDLD 465



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 173 ETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESA-----EDDGED-DTNDEDDDE 226
           + + E E  E+ K+  + K+E+  E   +++  K  E       E++GE  D  DED+D 
Sbjct: 371 QEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDG 430

Query: 227 DSNPKKNTQ 235
              P+   Q
Sbjct: 431 GQKPEGEPQ 439


>gi|42740903 MTERF domain containing 2 [Homo sapiens]
          Length = 381

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 231 KKNTQAPLELMAEFLRAEMAR-----------EYQLAKKLCQMILIYEPENPEAKEFFTL 279
           K  TQ P  L+ + LR   A            E+Q+ KKL    L  E E  E+    T 
Sbjct: 280 KGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL----LAREEEESESS---TS 332

Query: 280 IEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
            ++   +++ ++ + + +N ++D+  +   E D+E  D   DE +D
Sbjct: 333 DDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDD 378



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 179 ETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQA 236
           E  +V K  +  ++E++      D    L E  +DD E+D +++D+DED + + + +A
Sbjct: 311 EEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEA 368



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 173 ETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
           E  +E  T +  + ++   ++ ++E    + D+   +  EDD E + NDED+D+D
Sbjct: 324 EEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDD 378



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
           E   + ++ +   + +D     +E N+E    D D+   +  +D+ ED+  DEDDDE+
Sbjct: 326 ESESSTSDDKRASLDEDEDDDDEEDNDE---DDNDEDDDDEDDDEAEDNDEDEDDDEE 380



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 201 QDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
           +D DD+     +D+ EDD +++DD+ + N
Sbjct: 343 EDDDDEEDNDEDDNDEDDDDEDDDEAEDN 371


>gi|51477718 TATA box binding protein-associated factor, RNA
           polymerase II, Q [Homo sapiens]
          Length = 462

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 27/158 (17%)

Query: 163 LDSQG---GCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDT 219
           ++SQG   G  +   ++  + G  S +  ++++  ++     D D+   +  ED+ ED+ 
Sbjct: 291 IESQGSIPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDED 350

Query: 220 NDEDDDEDSNPKKNTQAPLELMAEFLRAEMAR------------EYQLAKK--------- 258
            DED +E+           +L AEF+ +   R            + Q+ KK         
Sbjct: 351 EDEDKEEEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQN 410

Query: 259 --LCQMILIYEPENPEAKEFF-TLIEEMLLMEKTQNHE 293
               Q  LI + EN   K  F +++E++ L EK +N +
Sbjct: 411 KAQRQKDLIMKVENLTLKNHFQSVLEQLELQEKQKNEK 448



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 277 FTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
           + ++ EM   +   N++ D +  DED   +   + DE+  +E  D  E+
Sbjct: 318 YDMLREMF-SDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEE 365


>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
           sapiens]
          Length = 1188

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
           S++    LD +    L E  +EPE       E  ++ + +K  +      +D++    E 
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484

Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
            E+  ED   D D +                      ++  +Y+ A+K    +L+     
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524

Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
           P+ KE     +E    +  +  E+  E  + +S  +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)

Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
           VK+EK      +D+++ + E+ + D E    +   + + N   N+++    +EL +   R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470

Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
             +AR+    KK  +       +   + EN +  + +   E    E+LL  K    +++ 
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530

Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
                E+SD+DS   E K +  EE   +   EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565


>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
           sapiens]
          Length = 1203

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
           S++    LD +    L E  +EPE       E  ++ + +K  +      +D++    E 
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484

Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
            E+  ED   D D +                      ++  +Y+ A+K    +L+     
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524

Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
           P+ KE     +E    +  +  E+  E  + +S  +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)

Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
           VK+EK      +D+++ + E+ + D E    +   + + N   N+++    +EL +   R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470

Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
             +AR+    KK  +       +   + EN +  + +   E    E+LL  K    +++ 
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530

Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
                E+SD+DS   E K +  EE   +   EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565


>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
           sapiens]
          Length = 1257

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
           S++    LD +    L E  +EPE       E  ++ + +K  +      +D++    E 
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484

Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
            E+  ED   D D +                      ++  +Y+ A+K    +L+     
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524

Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
           P+ KE     +E    +  +  E+  E  + +S  +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)

Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
           VK+EK      +D+++ + E+ + D E    +   + + N   N+++    +EL +   R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470

Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
             +AR+    KK  +       +   + EN +  + +   E    E+LL  K    +++ 
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530

Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
                E+SD+DS   E K +  EE   +   EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565


>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
          Length = 1507

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 50/158 (31%)

Query: 169  CELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDS 228
            C L    N+     ++ D V    E   +   +D D++  +  E+  E+D +++DDD D 
Sbjct: 1364 CYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDD 1423

Query: 229  NPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEK 288
              + +T        + L AE                                     +E+
Sbjct: 1424 LDELDTD-------QLLEAE-------------------------------------LEE 1439

Query: 289  TQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
              N+E  GE+ D D S      SDEEL++   +EGEDG
Sbjct: 1440 DDNNENAGEDGDNDFS-----PSDEELAN-LLEEGEDG 1471


>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82

Query: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141

Query: 147 WSEEVRKRLS 156
              +  +RL+
Sbjct: 142 RRLQRGRRLA 151


>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82

Query: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141

Query: 147 WSEEVRKRLS 156
              +  +RL+
Sbjct: 142 RRLQRGRRLA 151


>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
           sapiens]
          Length = 229

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 38  RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
           R  LGAP  A   +RA  G R    G SA  G +         G   P  +CS   PP  
Sbjct: 24  RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82

Query: 96  TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
            T      + GP +R   WLW P P   R    G         R+R     L  G LL Q
Sbjct: 83  GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141

Query: 147 WSEEVRKRLS 156
              +  +RL+
Sbjct: 142 RRLQRGRRLA 151


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 174  TVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
            TV++ E+GE        K+ K  E+      ++   S+ED  + D  +    E+ +  ++
Sbjct: 1308 TVSDGESGEE-------KKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESED 1360

Query: 234  TQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHE 293
             Q P    A+    E  +     KK  + I + E  + E K      EE    E+ +  E
Sbjct: 1361 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEE 1420

Query: 294  QDGENSDEDSSGESKGESDEELSDESSDE 322
            ++ E  DE+   +S G+  +++     D+
Sbjct: 1421 EEEEEEDENDDSKSPGKGRKKIRKILKDD 1449



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 150  EVRKRLSLQA-RCTLDSQGGCELMETVNEPETGEVSKD-------AVIVKQEKNNEYCLQ 201
            E+R+R +L + R T + Q G    +     E  +  K        AVIVK++K N     
Sbjct: 1095 ELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1154

Query: 202  ------DIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQL 255
                  DI    S   EDD ++   +   DE           L     F ++  + +  L
Sbjct: 1155 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQS--SGDEAL 1212

Query: 256  AKKLCQMILIYEPEN-PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
            +K +   +   + +N PE +    + ++MLL E   N   D + S +D   E K  + ++
Sbjct: 1213 SKSVPVTVDDDDDDNDPENR----IAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1268

Query: 315  LSDESSDE 322
              +   DE
Sbjct: 1269 NEENPGDE 1276


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 174  TVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
            TV++ E+GE        K+ K  E+      ++   S+ED  + D  +    E+ +  ++
Sbjct: 1346 TVSDGESGEE-------KKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESED 1398

Query: 234  TQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHE 293
             Q P    A+    E  +     KK  + I + E  + E K      EE    E+ +  E
Sbjct: 1399 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEE 1458

Query: 294  QDGENSDEDSSGESKGESDEELSDESSDE 322
            ++ E  DE+   +S G+  +++     D+
Sbjct: 1459 EEEEEEDENDDSKSPGKGRKKIRKILKDD 1487



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 150  EVRKRLSLQA-RCTLDSQGGCELMETVNEPETGEVSKD-------AVIVKQEKNNEYCLQ 201
            E+R+R +L + R T + Q G    +     E  +  K        AVIVK++K N     
Sbjct: 1133 ELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1192

Query: 202  ------DIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQL 255
                  DI    S   EDD ++   +   DE           L     F ++  + +  L
Sbjct: 1193 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQS--SGDEAL 1250

Query: 256  AKKLCQMILIYEPEN-PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
            +K +   +   + +N PE +    + ++MLL E   N   D + S +D   E K  + ++
Sbjct: 1251 SKSVPVTVDDDDDDNDPENR----IAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1306

Query: 315  LSDESSDE 322
              +   DE
Sbjct: 1307 NEENPGDE 1314


>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
           phosphoprotein 32 family, member B [Homo sapiens]
          Length = 272

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
           N   +  F L+ ++  ++     +Q+  +SD    G  K E DEE  DE   E EDG
Sbjct: 149 NDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDG 205



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 266 YEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
           Y+PE+ EA +    ++ +   E+ +  E + +  +ED   E   E ++E  D   D+ +D
Sbjct: 168 YDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKD 227



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 164 DSQGGCELMETVNEPETGEVSKDAVI-------VKQEKNNEYCLQDIDDK--LSESAEDD 214
           DS    + ++   E E GE  KD          + +E++ +  ++  DDK  +SE  E+ 
Sbjct: 177 DSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEF 236

Query: 215 GED-DTNDEDDDEDSNPKKN 233
           G D D +DED+DED   +++
Sbjct: 237 GLDKDEDDEDEDEDEEEEES 256



 Score = 28.9 bits (63), Expect = 6.5
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)

Query: 199 CLQDIDDKLSESAEDDGE-DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAK 257
           CL   D +  E+ + D + D  + E++DE+   +K+ +            E   E +L +
Sbjct: 164 CLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN-----------EDGEEEELDE 212

Query: 258 KLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSD 317
                    E +  E  E     +E+   E+    ++D ++ DED   E +     E   
Sbjct: 213 ---------EEDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESGKGENRK 263

Query: 318 ESSDEGEDG 326
             +D+ EDG
Sbjct: 264 RETDDEEDG 272


>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
           phosphoprotein 32 family, member B [Homo sapiens]
          Length = 272

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
           N   +  F L+ ++  ++     +Q+  +SD    G  K E DEE  DE   E EDG
Sbjct: 149 NDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDG 205



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 266 YEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
           Y+PE+ EA +    ++ +   E+ +  E + +  +ED   E   E ++E  D   D+ +D
Sbjct: 168 YDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKD 227



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 164 DSQGGCELMETVNEPETGEVSKDAVI-------VKQEKNNEYCLQDIDDK--LSESAEDD 214
           DS    + ++   E E GE  KD          + +E++ +  ++  DDK  +SE  E+ 
Sbjct: 177 DSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEF 236

Query: 215 GED-DTNDEDDDEDSNPKKN 233
           G D D +DED+DED   +++
Sbjct: 237 GLDKDEDDEDEDEDEEEEES 256



 Score = 28.9 bits (63), Expect = 6.5
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)

Query: 199 CLQDIDDKLSESAEDDGE-DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAK 257
           CL   D +  E+ + D + D  + E++DE+   +K+ +            E   E +L +
Sbjct: 164 CLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN-----------EDGEEEELDE 212

Query: 258 KLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSD 317
                    E +  E  E     +E+   E+    ++D ++ DED   E +     E   
Sbjct: 213 ---------EEDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESGKGENRK 263

Query: 318 ESSDEGEDG 326
             +D+ EDG
Sbjct: 264 RETDDEEDG 272


>gi|17975763 myelin transcription factor 1 [Homo sapiens]
          Length = 1121

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 36/171 (21%)

Query: 182 EVSKDAVIVKQEKNNEYCLQDIDDKLSESA----------EDDGEDDTNDEDDDEDSNPK 231
           E +++ V V  E++ + C Q ++D  SE +          E+D E++  +E+++ED   +
Sbjct: 219 EDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEE 278

Query: 232 KNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE----------------PENPEAKE 275
           +  +   E   E    E   E +  ++     +I++                PE+P  K 
Sbjct: 279 EEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPESPSPKP 338

Query: 276 FFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
            +++I E+          +  ++ DED+       +DE    +    G  G
Sbjct: 339 EYSVIVEV----------RSDDDKDEDTHSRKSTVTDESEMQDMMTRGNLG 379



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 210 SAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
           +A ++GE     + +D +   +  T+   +L  + L    + E    K     IL +E E
Sbjct: 205 AASEEGEKGLFIQPEDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKG----ILSHEEE 260

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
           + E +E            + +  E+D E  +E+   E + E +EE  +E  +E E+
Sbjct: 261 DEEEEE------------EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304


>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 148 SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
           SEE   +   +  C+         +    E    + SK   +    + N    +  DD  
Sbjct: 467 SEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLN 526

Query: 208 SESAEDDG------EDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
            ES E+ G      EDD+  E D++ S  +    +  E     L  ++  E    K+L +
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGS-EKELHE 585

Query: 262 MILIYEPE--NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDES 319
            +L  E E  + E  EF     E +L E+    E D ++ +++   ++  +  ++ SDE 
Sbjct: 586 NVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK 645

Query: 320 SDE 322
            DE
Sbjct: 646 EDE 648



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 163 LDSQGG-CELMETV-------NEPETGEVSKDAV--IVKQEKNNEYCLQDIDDKLSESAE 212
           LD +G   EL E V       N+ E  E   D    ++ +E +     +D D+K  E  E
Sbjct: 574 LDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK--EEEE 631

Query: 213 DDGE---DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
           D  E   DD +DE +DE+   +K  +A           + A E    +KL +     E E
Sbjct: 632 DTYEKVFDDESDEKEDEEYADEKGLEA---------ADKKAEEGDADEKLFEESDDKEDE 682

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
           + + KE     E++         E D  N   +   + + +S E+L D+S + G  G
Sbjct: 683 DADGKEVEDADEKLF--------EDDDSN---EKLFDEEEDSSEKLFDDSDERGTLG 728



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)

Query: 200 LQDIDDKLSESAEDDGEDDTNDEDD-----DEDSNPKKNTQAPLELMAEFLRAEMAREYQ 254
           L++ D + SE  EDDG +   DE+      DEDS+ K+  +   E + +    E   E  
Sbjct: 592 LEENDSENSEF-EDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEY 650

Query: 255 LAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
             +K  +       E    ++ F               E+  +  DED+ G+   ++DE+
Sbjct: 651 ADEKGLEAADKKAEEGDADEKLF---------------EESDDKEDEDADGKEVEDADEK 695

Query: 315 LSDESS------DEGEDGS 327
           L ++        DE ED S
Sbjct: 696 LFEDDDSNEKLFDEEEDSS 714


>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
          Length = 755

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 148 SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
           SEE   +   +  C+         +    E    + SK   +    + N    +  DD  
Sbjct: 467 SEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLN 526

Query: 208 SESAEDDG------EDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
            ES E+ G      EDD+  E D++ S  +    +  E     L  ++  E    K+L +
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGS-EKELHE 585

Query: 262 MILIYEPE--NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDES 319
            +L  E E  + E  EF     E +L E+    E D ++ +++   ++  +  ++ SDE 
Sbjct: 586 NVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK 645

Query: 320 SDE 322
            DE
Sbjct: 646 EDE 648



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 163 LDSQGG-CELMETV-------NEPETGEVSKDAV--IVKQEKNNEYCLQDIDDKLSESAE 212
           LD +G   EL E V       N+ E  E   D    ++ +E +     +D D+K  E  E
Sbjct: 574 LDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK--EEEE 631

Query: 213 DDGE---DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
           D  E   DD +DE +DE+   +K  +A           + A E    +KL +     E E
Sbjct: 632 DTYEKVFDDESDEKEDEEYADEKGLEA---------ADKKAEEGDADEKLFEESDDKEDE 682

Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
           + + KE     E++         E D  N   +   + + +S E+L D+S + G  G
Sbjct: 683 DADGKEVEDADEKLF--------EDDDSN---EKLFDEEEDSSEKLFDDSDERGTLG 728



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)

Query: 200 LQDIDDKLSESAEDDGEDDTNDEDD-----DEDSNPKKNTQAPLELMAEFLRAEMAREYQ 254
           L++ D + SE  EDDG +   DE+      DEDS+ K+  +   E + +    E   E  
Sbjct: 592 LEENDSENSEF-EDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEY 650

Query: 255 LAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
             +K  +       E    ++ F               E+  +  DED+ G+   ++DE+
Sbjct: 651 ADEKGLEAADKKAEEGDADEKLF---------------EESDDKEDEDADGKEVEDADEK 695

Query: 315 LSDESS------DEGEDGS 327
           L ++        DE ED S
Sbjct: 696 LFEDDDSNEKLFDEEEDSS 714


>gi|110347463 human immunodeficiency virus type I enhancer binding
            protein 2 [Homo sapiens]
          Length = 2446

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 172  METVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
            M +V++ ET E      + K  + +       D + S++ E DGED  +++DDDED +
Sbjct: 1862 MTSVDDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDED 1919


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 14/214 (6%)

Query: 123  ARGRREGRMRATGV-RLAC-GTLLPQWSEEVRKRLSLQARCT--LDSQGGCELMETVNEP 178
            AR  R G+ +   + RL   GT+  +  E  +K++ L       +D+ G   L       
Sbjct: 899  ARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRS 958

Query: 179  ETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPL 238
             +   +K+ +    +   E   ++++ + SE  E D ++     +  E+   + +T A  
Sbjct: 959  NSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETREN---EVSTSATD 1015

Query: 239  ELMAEFLRAEMAR-------EYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQN 291
            EL+++F  A  A        E +  K   ++I   + +  E +E    +EE+ ++ + ++
Sbjct: 1016 ELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075

Query: 292  HEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
              +  + +D DS  ESK ++    + ES  E  D
Sbjct: 1076 STKKAQTNDSDSDTESKRQAQRSSASESETEDSD 1109



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 216 EDDTNDEDDDEDSNPKKNTQ 235
           + D++DEDDD+D  PK+ T+
Sbjct: 204 KQDSSDEDDDDDEAPKRQTR 223


>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
          Length = 282

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 21/173 (12%)

Query: 153 KRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAE 212
           K+ ++ A    + +   E  E  NE E GE  K+    K EK  E      D K  ++  
Sbjct: 115 KKEAVAAEVKNEEEDQKEDEEDQNE-EKGEAGKED---KDEKGEE------DGKEDKNGN 164

Query: 213 DDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPE 272
           + GED    ED  +  + K N +   E   +    E  +E    K           EN +
Sbjct: 165 EKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGK-----------ENED 213

Query: 273 AKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
            KE     E   +  K    E++    DE  + E  G+  E+L +E   + ED
Sbjct: 214 GKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEED 266



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 29/205 (14%)

Query: 122 AARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPETG 181
           A +G      +    RL+   L+P   E   KR S   +    S    E ++T +     
Sbjct: 7   AGQGDMRQEPKRRSARLSA-MLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDT-SAQAVA 64

Query: 182 EVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELM 241
           E  ++AV+ +    N    ++ + K++E+   + E     E++ ED+  K   +      
Sbjct: 65  ETKQEAVVEEDYNENA---KNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKK----- 116

Query: 242 AEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDE 301
            E + AE+  E +  K         E E  + +E     +E    +K +  E+DG+   E
Sbjct: 117 -EAVAAEVKNEEEDQK---------EDEEDQNEEKGEAGKE----DKDEKGEEDGK---E 159

Query: 302 DSSGESKGESDEELSDESSDEGEDG 326
           D +G  KGE  +E   E   +GEDG
Sbjct: 160 DKNGNEKGEDAKE--KEDGKKGEDG 182


>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
           sapiens]
          Length = 1094

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 191 KQEKNNEYCLQDIDDKLSESAE--DDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAE 248
           ++E +++       +  SES E  + GE+  ++ED  EDS+ ++++++  E   E  R  
Sbjct: 681 EEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTA 740

Query: 249 MAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESK 308
                   K   +     E EN ++K              T +   D  +S EDSS +S+
Sbjct: 741 KRNSKAKGKSDSED---GEKENEKSK--------------TSDSSNDESSSIEDSSSDSE 783

Query: 309 GESDEELSDES 319
            ES+ E   ES
Sbjct: 784 SESEPESESES 794



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 19/81 (23%)

Query: 248 EMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGES 307
           E+A+E+  A K  Q       EN  AK+F++  EE          E+D  +S  DS  ES
Sbjct: 655 ELAKEWTPAGKAKQ-------EN-SAKKFYSESEE----------EEDSSDSSSDSESES 696

Query: 308 KGESDEE-LSDESSDEGEDGS 327
             ES E+  S E  D  ED S
Sbjct: 697 GSESGEQGESGEEGDSNEDSS 717



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 229 NPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEK 288
           +P       +EL  E+  A  A++   AKK        E E  E     +   E     +
Sbjct: 645 DPSVRNVEVIELAKEWTPAGKAKQENSAKKFYS-----ESEEEEDSSDSSSDSESESGSE 699

Query: 289 TQNHEQDGENSD--EDSSGESKGESDEELSDESSDEGE 324
           +    + GE  D  EDSS +S  E D E   ES  E +
Sbjct: 700 SGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENK 737


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.127    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,677,174
Number of Sequences: 37866
Number of extensions: 780992
Number of successful extensions: 9782
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 6265
Number of HSP's gapped (non-prelim): 2493
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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