Guide to the Human Genome
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Search of human proteins with 239741693

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ...  1008   0.0  
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]          1005   0.0  
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ...   922   0.0  
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ...    35   0.15 
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ...    35   0.15 
gi|18702331 OTU domain containing 7A [Homo sapiens]                    34   0.26 
gi|239756693 PREDICTED: similar to coiled-coil domain containing...    33   0.44 
gi|169171485 PREDICTED: hypothetical protein [Homo sapiens]            33   0.44 
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]            33   0.44 
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]            33   0.44 
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ...    33   0.44 
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s...    33   0.44 
gi|239743797 PREDICTED: similar to cell recognition molecule CAS...    33   0.44 
gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo ...    33   0.44 
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    33   0.57 
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    33   0.57 
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    33   0.57 
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]            33   0.75 
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]            33   0.75 
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ...    33   0.75 
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ...    33   0.75 
gi|82830424 gon-4-like isoform a [Homo sapiens]                        33   0.75 
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     33   0.75 
gi|124378039 SEC16 homolog A [Homo sapiens]                            32   0.98 
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]            32   0.98 
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]            32   0.98 
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ...    32   0.98 
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]            32   0.98 
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ...    32   0.98 
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    32   1.3  

>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
           sapiens]
          Length = 480

 Score = 1008 bits (2607), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
           MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60

Query: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
           LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120

Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
           SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180

Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
           ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240

Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
           VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300

Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
           SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360

Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
           PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420

Query: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
           SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480


>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 479/480 (99%), Positives = 479/480 (99%)

Query: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
           MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60

Query: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
           LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120

Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
           SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180

Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
           ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240

Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
           VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300

Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
           SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360

Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
           PLPHRVL SSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420

Query: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
           SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480


>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
           sapiens]
          Length = 444

 Score =  922 bits (2383), Expect = 0.0
 Identities = 441/442 (99%), Positives = 441/442 (99%)

Query: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
           MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1   MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60

Query: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
           LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61  LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120

Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
           SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180

Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
           ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240

Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
           VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300

Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
           SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360

Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
           PLPHRVL SSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420

Query: 421 SAPRPVGSRDVAAAAAEVRKTP 442
           SAPRPVGSRDVAAAAAEVRKTP
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTP 442


>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
           sapiens]
          Length = 229

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 348 STLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
           S L P   HQ   P P   L +S+   G+     LRL     GR AG ASP   + R+  
Sbjct: 2   SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57

Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPER----RHRLTRPPRA 463
              G P P  P A  P+ + +   A  A   R    A  R   P R    R R+ R  R 
Sbjct: 58  EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARG 117

Query: 464 YPA 466
            PA
Sbjct: 118 PPA 120


>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
           sapiens]
          Length = 229

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 348 STLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
           S L P   HQ   P P   L +S+   G+     LRL     GR AG ASP   + R+  
Sbjct: 2   SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57

Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPER----RHRLTRPPRA 463
              G P P  P A  P+ + +   A  A   R    A  R   P R    R R+ R  R 
Sbjct: 58  EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARG 117

Query: 464 YPA 466
            PA
Sbjct: 118 PPA 120


>gi|18702331 OTU domain containing 7A [Homo sapiens]
          Length = 926

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 12/95 (12%)

Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELG 411
           P R   +  P+P R   S   PT   L    R  P P   RA RA+ G  A   G     
Sbjct: 695 PRRPETEGVPVPERA--SPGPPTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRA 752

Query: 412 RPAPPCPEASAPRPV----------GSRDVAAAAA 436
             + P P  S P P           G+RD A A A
Sbjct: 753 SASGPVPGRSPPAPARQSVIHVQASGARDEACAPA 787


>gi|239756693 PREDICTED: similar to coiled-coil domain containing 92
           [Homo sapiens]
          Length = 272

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
           R+ +A PG    R  S + G  AP  P++   +P    DV+ A++ +     A + L G 
Sbjct: 195 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 250

Query: 452 ERRHRLTR---PPRAYPAKT 468
           ER H L R   P R++P  T
Sbjct: 251 ERGHLLYREDSPSRSWPGPT 270


>gi|169171485 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 349

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 391 RRAGRASPGLWAKRAGSWE-LGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLW 449
           +R+  A   L A R G+W  L RP PP       R  G+   A   AEV    G L  L 
Sbjct: 73  QRSAPAVAKLGAAREGAWAALTRPKPPARRRLPGRGAGAEMPATLRAEVSGQQGLLGALR 132

Query: 450 GPE 452
           GP+
Sbjct: 133 GPQ 135


>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
           A  +  W L RP P  P A AP P  +R  AAA    R    +           R  RPP
Sbjct: 57  AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109

Query: 462 RAYPAKTFT 470
            ++PA + T
Sbjct: 110 SSHPAPSRT 118


>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 378

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
           R+ +A PG    R  S + G  AP  P++   +P    DV+ A++ +     A + L G 
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 356

Query: 452 ERRHRLTR---PPRAYPAKT 468
           ER H L R   P R++P  T
Sbjct: 357 ERGHLLYREDSPSRSWPGPT 376


>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
           sapiens]
          Length = 165

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
           A  +  W L RP P  P A AP P  +R  AAA    R    +           R  RPP
Sbjct: 57  AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109

Query: 462 RAYPAKTFT 470
            ++PA + T
Sbjct: 110 SSHPAPSRT 118


>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
           sapiens]
          Length = 378

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
           R+ +A PG    R  S + G  AP  P++   +P    DV+ A++ +     A + L G 
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 356

Query: 452 ERRHRLTR---PPRAYPAKT 468
           ER H L R   P R++P  T
Sbjct: 357 ERGHLLYREDSPSRSWPGPT 376


>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 944

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 339 WLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASP 398
           W+ +G +    LH + E          V G+S   T A         P  W R    A+ 
Sbjct: 55  WVNSGVIKPGVLHLQAEADG------AVFGASPCTTAA---------PPRWERGTEEAAG 99

Query: 399 GLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLT 458
               +R    ELGRP+    ++   RP  +  V  A       PGA  R  GPER  +L 
Sbjct: 100 ITGGERQA--ELGRPSRSLLDSRCCRPPPAPSVRDAPEPAASVPGAAPR--GPERSRKLR 155

Query: 459 RPPRAYPAKTFTEPFFGALW 478
                  ++T   P  GA W
Sbjct: 156 CESAGPTSETQLGP--GAAW 173


>gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
           sapiens]
          Length = 165

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
           A  +  W L RP P  P A AP P  +R  AAA    R    +           R  RPP
Sbjct: 57  AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109

Query: 462 RAYPAKTFT 470
            ++PA + T
Sbjct: 110 SSHPAPSRT 118


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 30/104 (28%)

Query: 363  PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPE--- 419
            PHR   S   P  AA          P   R  RA        AG W+L  PAP       
Sbjct: 1233 PHRPRASHRTPAAAA----------PHHHRHRRA--------AGGWDLPPPAPTSRSLED 1274

Query: 420  -ASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP------ERRHR 456
             +S PR   +R +   +   R+ P A    WGP       RRHR
Sbjct: 1275 LSSCPRAAPARRLTGPSRHARRCPHAAH--WGPPLPTASHRRHR 1316


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSR 429
           GAA +R   +L     P    R   R  P    +R GS E  RP PP P  + PRP  + 
Sbjct: 53  GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAA 112

Query: 430 DVAAAAAEVR---KTPGA 444
               AA   R    +PGA
Sbjct: 113 PSPPAAPGPRGGGASPGA 130


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSR 429
           GAA +R   +L     P    R   R  P    +R GS E  RP PP P  + PRP  + 
Sbjct: 53  GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAA 112

Query: 430 DVAAAAAEVR---KTPGA 444
               AA   R    +PGA
Sbjct: 113 PSPPAAPGPRGGGASPGA 130


>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 319

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
           P + H    PLPH+    +    G+ +++ L L+P           PW R +  A PG  
Sbjct: 31  PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90

Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
                W    KR+   +  +P  P P + A    GS
Sbjct: 91  KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126


>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPG--LWAKRAGSWELGRPAPP 416
           P PH      SHP    L    +   WP  + + R SPG  LW +R   W L RP  P
Sbjct: 137 PAPH------SHPPPIGLALACKSRRWPRAQPS-RMSPGPPLWERRQSYWPLTRPLGP 187


>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
           sapiens]
          Length = 319

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
           P + H    PLPH+    +    G+ +++ L L+P           PW R +  A PG  
Sbjct: 31  PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90

Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
                W    KR+   +  +P  P P + A    GS
Sbjct: 91  KTNAAWGWRGKRSDGGQTHQPQGPRPPSEALALEGS 126


>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
           sapiens]
          Length = 319

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
           P + H    PLPH+    +    G+ +++ L L+P           PW R +  A PG  
Sbjct: 31  PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90

Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
                W    KR+   +  +P  P P + A    GS
Sbjct: 91  KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126


>gi|82830424 gon-4-like isoform a [Homo sapiens]
          Length = 2240

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 44/147 (29%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 342  AGNLSGSTLHPEREHQD------DHPLPHRVLGSSSHPT-GAALVRVLRLLPWPWGRRAG 394
            +G   GSTL   RE         D P PH        PT GA L  V R    P  R   
Sbjct: 1947 SGLAVGSTLPSPREVTVTERLLLDGPPPHSPETPQFPPTTGAVLYTVKRNQVGPEVRSCP 2006

Query: 395  RASPGLWAKRAGS------------WELGR----PAPPCPEASAPRPVGSRDVAAAAAEV 438
            +ASP L  +R G             W+       P    P AS   PV S+   A    V
Sbjct: 2007 KASPRLQKEREGQKAVSESEALMLVWDASETEKLPGTVEPPASFLSPVSSKTRDAGRRHV 2066

Query: 439  RKTPGALDRLWGPERRHRLTRPPRAYP 465
               P   +R W P  R R+    R  P
Sbjct: 2067 SGKPDTQER-WLPSSRARVKTRDRTCP 2092


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 368 GSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVG 427
           GS S+   A +    R    P   RA R +P   A  A       P PP P A+A  P  
Sbjct: 89  GSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAA-PAR 147

Query: 428 SRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEP 472
           +   AAAAA    +PG        +R   L  PP A  A     P
Sbjct: 148 APRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAP 192


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 394 GRASPGLWAK-RAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPE 452
           G   PG W   + G    G+   PCPE     PV S    A +     TP  L +  G E
Sbjct: 208 GLQMPGQWGPVQGGPQPSGQHRSPCPEG----PVPSGVPCATSVPHFPTPSILHQGPGHE 263

Query: 453 RRHRLTRPPRAYPA 466
           +   L  PP A P+
Sbjct: 264 QHSPLVAPPAALPS 277


>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
           P+ V  S   P+G    R+L  L W WGR AG + S G W    G W L R       A 
Sbjct: 41  PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95

Query: 422 APRPVG 427
           +  P+G
Sbjct: 96  SLGPLG 101


>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
           P+ V  S   P+G    R+L  L W WGR AG + S G W    G W L R       A 
Sbjct: 41  PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95

Query: 422 APRPVG 427
           +  P+G
Sbjct: 96  SLGPLG 101


>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
           sapiens]
          Length = 315

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 32/113 (28%)

Query: 336 LPSWLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWP------- 388
           LP   +  +L  S LHP R            LG      G A   +LR+ P P       
Sbjct: 143 LPPSRKRNSLGSSPLHPVR------------LGRVRAHAGPAGTSILRVAPHPALPGAQV 190

Query: 389 -------WGRRAGRASPGLW---AKRAGSWELGR---PAPPCPEASAPRPVGS 428
                  W  R G++    W     R  S   GR   PAPP  EA++   +GS
Sbjct: 191 HWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASREDLGS 243


>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
           P+ V  S   P+G    R+L  L W WGR AG + S G W    G W L R       A 
Sbjct: 41  PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95

Query: 422 APRPVG 427
           +  P+G
Sbjct: 96  SLGPLG 101


>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
           sapiens]
          Length = 315

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 32/113 (28%)

Query: 336 LPSWLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWP------- 388
           LP   +  +L  S LHP R            LG      G A   +LR+ P P       
Sbjct: 143 LPPSRKRNSLGSSPLHPVR------------LGRVRAHAGPAGTSILRVAPHPALPGAQV 190

Query: 389 -------WGRRAGRASPGLW---AKRAGSWELGR---PAPPCPEASAPRPVGS 428
                  W  R G++    W     R  S   GR   PAPP  EA++   +GS
Sbjct: 191 HWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASREDLGS 243


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 171 SNTYSTLRLGENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQ---VKRL 227
           SNT   +R G     A   ++ +    SSF A    Q ++    +P A  G Q    +R 
Sbjct: 776 SNTGKLIRTGARGPPAPSSSLPIRQEPSSFRAVPPPQPQMFGEELPDAQDGEQPGPSRRK 835

Query: 228 QAPGQGSPPRLYSVSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGL 287
           + P       LY++        D+E    L E           D + + R PEE +E   
Sbjct: 836 RQPSMSETMPLYTLCKEDLESMDKEVDDILGEGS--------DDSDSEKRRPEEQEE--- 884

Query: 288 GVGEPPKDKLGDRSVREI 305
              EP   K G R  R +
Sbjct: 885 ---EPQPRKPGTRRERTL 899


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,472,507
Number of Sequences: 37866
Number of extensions: 1288178
Number of successful extensions: 5041
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 4988
Number of HSP's gapped (non-prelim): 111
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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