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Search of human proteins with 239741632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
(494 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ... 1008 0.0
gi|239753192 PREDICTED: hypothetical protein [Homo sapiens] 545 e-155
gi|239747766 PREDICTED: hypothetical protein [Homo sapiens] 545 e-155
gi|33286444 mastermind-like 2 [Homo sapiens] 35 0.12
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.20
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 33 0.78
gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isof... 33 0.78
gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isof... 33 0.78
gi|111955326 MLX interacting protein [Homo sapiens] 32 1.0
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|19923559 EMSY protein [Homo sapiens] 32 1.7
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 31 2.3
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 31 3.0
gi|193804867 nucleolar and spindle associated protein 1 isoform ... 31 3.0
gi|193804865 nucleolar and spindle associated protein 1 isoform ... 31 3.0
gi|17505234 nucleolar and spindle associated protein 1 isoform 2... 31 3.0
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa... 31 3.0
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa... 31 3.0
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa... 31 3.0
gi|12751477 forkhead box L2 [Homo sapiens] 30 3.9
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 30 3.9
gi|7662346 ADNP homeobox 2 [Homo sapiens] 30 3.9
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 30 5.0
gi|239753034 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|239747584 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|239741451 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
Length = 494
Score = 1008 bits (2605), Expect = 0.0
Identities = 494/494 (100%), Positives = 494/494 (100%)
Query: 1 MPGLKGVTEVHARATLPPAGLYFKALFKPCFLQEAFSDYTSLLPTNGASNISHLTPALAA 60
MPGLKGVTEVHARATLPPAGLYFKALFKPCFLQEAFSDYTSLLPTNGASNISHLTPALAA
Sbjct: 1 MPGLKGVTEVHARATLPPAGLYFKALFKPCFLQEAFSDYTSLLPTNGASNISHLTPALAA 60
Query: 61 EVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTDQHV 120
EVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTDQHV
Sbjct: 61 EVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTDQHV 120
Query: 121 DPLSSDTQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQDIQLPQG 180
DPLSSDTQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQDIQLPQG
Sbjct: 121 DPLSSDTQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQDIQLPQG 180
Query: 181 TDKTSASSTAWSDLSGYTAPPKLLNFAQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASA 240
TDKTSASSTAWSDLSGYTAPPKLLNFAQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASA
Sbjct: 181 TDKTSASSTAWSDLSGYTAPPKLLNFAQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASA 240
Query: 241 SATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQNS 300
SATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQNS
Sbjct: 241 SATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQNS 300
Query: 301 QESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRIWGRTPAAALRKGII 360
QESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRIWGRTPAAALRKGII
Sbjct: 301 QESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRIWGRTPAAALRKGII 360
Query: 361 LARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGR 420
LARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGR
Sbjct: 361 LARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGR 420
Query: 421 THPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGR 480
THPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGR
Sbjct: 421 THPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGR 480
Query: 481 RALPRELSFQNKVC 494
RALPRELSFQNKVC
Sbjct: 481 RALPRELSFQNKVC 494
>gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 545 bits (1405), Expect = e-155
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 227 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 286
FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH
Sbjct: 64 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 123
Query: 287 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 346
HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI
Sbjct: 124 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 183
Query: 347 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 406
WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD
Sbjct: 184 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 243
Query: 407 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 466
GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE
Sbjct: 244 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 303
Query: 467 SFTKIPPHALAGGRRALPRELSFQNKVC 494
SFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 304 SFTKIPPHALAGGRRALPRELSFQNKVC 331
>gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 545 bits (1405), Expect = e-155
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 227 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 286
FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH
Sbjct: 64 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 123
Query: 287 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 346
HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI
Sbjct: 124 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 183
Query: 347 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 406
WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD
Sbjct: 184 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 243
Query: 407 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 466
GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE
Sbjct: 244 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 303
Query: 467 SFTKIPPHALAGGRRALPRELSFQNKVC 494
SFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 304 SFTKIPPHALAGGRRALPRELSFQNKVC 331
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 35.4 bits (80), Expect = 0.12
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 28 KPCF---LQEAFSDYTSLLPTNGASNISHLTPALAAEVCVNDNHREEEAEEVEQQQQQQK 84
KP F +A S+LP+ ++ H T + ++++ ++ +QQQQQQ+
Sbjct: 557 KPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 616
Query: 85 KKRCFSPWRCGRTRLNQGT------------QQHWRETKTENSTDQHVDPLSSDTQGCPA 132
+++ S + + Q + QQ ++ + + Q P S Q P+
Sbjct: 617 QQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPS 676
Query: 133 SPYL 136
P L
Sbjct: 677 QPLL 680
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 34.7 bits (78), Expect = 0.20
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 157 QQGNKGNRAPSLQSLGQDIQLPQGTDKTSASSTA------WSDLSGYTAPPKLLNFAQPY 210
QQ P L S LP T + +ST+ + + T+ P + P
Sbjct: 1738 QQAQSSASVPPLASA----PLPPSTSASVPASTSAPLPATLTPVPASTSAPVPASTLAPV 1793
Query: 211 FCQLSAVAAVTNLKPAFADL-VRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSEL 269
SA + L P A V A+V ++++A + A ++ P P L+++STP+ +
Sbjct: 1794 LASTSAPVPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASV 1853
Query: 270 GLTPSHGEP 278
+ S P
Sbjct: 1854 TILASASIP 1862
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.46
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 341 LLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGR 400
L+ PR+ RTP R+G+ LP+ R R ++ SG +F G
Sbjct: 135 LVAPRVLPRTPQRWTRRGV---------GGRLPQAARSSPRGSKLSGAASPT--AIFPGT 183
Query: 401 ENGGRDGACSIEVLPRTSGRTHPA-PAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSS 459
GR G C+ + R A P PC R A + P KLP++
Sbjct: 184 RGSGRGGGCNCGGGSCSCCRWSMAGPFPCARRATCLASLSPPP------------KLPTA 231
Query: 460 PPPRA 464
P PRA
Sbjct: 232 PGPRA 236
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 33.5 bits (75), Expect = 0.46
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 400 RENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAG--GPGFKG 446
RE G +GA L + R PAP P AS RAAG GPGF G
Sbjct: 221 REPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 32.7 bits (73), Expect = 0.78
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 124 SSDTQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQDIQLPQGTDK 183
S+DT G S Y + G + G+G + G G+ S S GQ P +
Sbjct: 44 STDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
Query: 184 TSASSTAWSDLSGYTAPPKLLNFAQP 209
+ SST+ S Y + + ++ QP
Sbjct: 104 PAPSSTSGS----YGSSSQSSSYGQP 125
>gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isoform
2 [Homo sapiens]
Length = 798
Score = 32.7 bits (73), Expect = 0.78
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 415 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 473
P S R+ P PAPCL+ LR + K + + F R L S A F + P
Sbjct: 13 PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 72
Query: 474 HALAGGRRALPRELS 488
L R+ L R++S
Sbjct: 73 EQLEERRQRLERQIS 87
>gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isoform
1 [Homo sapiens]
Length = 879
Score = 32.7 bits (73), Expect = 0.78
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 415 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 473
P S R+ P PAPCL+ LR + K + + F R L S A F + P
Sbjct: 94 PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 153
Query: 474 HALAGGRRALPRELS 488
L R+ L R++S
Sbjct: 154 EQLEERRQRLERQIS 168
>gi|111955326 MLX interacting protein [Homo sapiens]
Length = 919
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 207 AQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTP 266
A P F Q A V N P+ +A T A AT F GL TT P S + P
Sbjct: 464 APPTFHQPQKFAGV-NKAPSVITHTASATLTHDAPATTFSQSQGLVITTHHPAPS--AAP 520
Query: 267 SELGLTPSHGEPRPR 281
L L+P P+PR
Sbjct: 521 CGLALSPVTRPPQPR 535
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 31.6 bits (70), Expect = 1.7
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 336 GPLSHLLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFF 395
GP PR W P + R G++L L +++L + R+ + R G+ C
Sbjct: 118 GPTPIPRAPRPWRPPPPSPGRVGVLLE---VLPRSLL--QIRRALALGRQRGSYRICANG 172
Query: 396 LFLGRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRK 455
+ + + C +L R G+ +P R A GPG + + R L +
Sbjct: 173 FY---KQSRKTPVCCRVLLVRARGKPGCSPR----------RGAAGPGACELGEGRRLPR 219
Query: 456 LPS-SPP--PRAGESFTKIPPHALAGGRRALPRELSFQNK 492
P SPP P + ++ ++PP GGR A P S N+
Sbjct: 220 APGPSPPPLPASADAAGRLPP----GGRLAHPGSASGPNR 255
>gi|19923559 EMSY protein [Homo sapiens]
Length = 1322
Score = 31.6 bits (70), Expect = 1.7
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 179 QGTDKTSASSTAWSDLSGYTAPPKLLNFAQPYFCQLSAVAAVTNLKP----AFADLVRAA 234
Q T+ T+ + T P +L+ + Y AAVT L P A
Sbjct: 269 QTTNTTTQKVIIVTTSPSSTFVPNILSKSHNY-------AAVTKLVPTSVIASTTQKPPV 321
Query: 235 VGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPS 274
V TAS S+ V +G +S+TP P +T++ + + TPS
Sbjct: 322 VITASQSSLVSNSSSGSSSSTPSPIPNTVAVTAVVSSTPS 361
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 31.2 bits (69), Expect = 2.3
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 195 SGYT--APPKLLNFAQPYFCQLSAVAAVTNLKPAFADLVRAAVGTASASATVFQPPAGLT 252
SG+T P L +P C LS A + ++P D R+ ++++ + PP L
Sbjct: 393 SGHTWQQSPFCLGSGRPQDCLLSG-APMAKVQPRAQDEARSPCLSSTSPENITSPPLKLG 451
Query: 253 STTPF----------PFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQNSQE 302
++TP P LS S P + + P E ++ + AWQ
Sbjct: 452 TSTPCDSFGIGVSVEPHLSKTSRPMDASSLSDSEDSSPEEEEEDKMSSMSLC-AWQEKTP 510
Query: 303 STRVKAS 309
+R ++S
Sbjct: 511 HSRPQSS 517
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 401 ENGGRDGACSIEVLPRTSGRTHPAP-------APCLREAASGLRAAGG--------PGFK 445
E GG DG + ++ P + AP +P L E A G A GG PG +
Sbjct: 20 EPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLE 79
Query: 446 GVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGRRA 482
G + PS+PPPR+G P A G R+
Sbjct: 80 GGPR----DPGPSAPPPRSGPRGQLASPDAPGPGPRS 112
>gi|193804867 nucleolar and spindle associated protein 1 isoform 3
[Homo sapiens]
Length = 402
Score = 30.8 bits (68), Expect = 3.0
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 59 AAEVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTD- 117
+A C + EE E+Q K + RC R++ +QQ+ E K N T+
Sbjct: 60 SASSCDETEIQISNQEEAERQPLGHVTK---TRRRCKTVRVDPDSQQNHSEIKISNPTEF 116
Query: 118 -QHVDPLSSD---TQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQ 173
H S D T P+ P AV G NRD+ + +G K SL
Sbjct: 117 QNHEKQESQDLRATAKVPSPPDEHQEAENAVSSG--NRDSKVPSEGKK--------SLYT 166
Query: 174 DIQLPQGTDKTSASST 189
D G +K +A +T
Sbjct: 167 DESSKPGKNKRTAITT 182
>gi|193804865 nucleolar and spindle associated protein 1 isoform 1
[Homo sapiens]
Length = 441
Score = 30.8 bits (68), Expect = 3.0
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 59 AAEVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTD- 117
+A C + EE E+Q K + RC R++ +QQ+ E K N T+
Sbjct: 60 SASSCDETEIQISNQEEAERQPLGHVTK---TRRRCKTVRVDPDSQQNHSEIKISNPTEF 116
Query: 118 -QHVDPLSSD---TQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQ 173
H S D T P+ P AV G NRD+ + +G K SL
Sbjct: 117 QNHEKQESQDLRATAKVPSPPDEHQEAENAVSSG--NRDSKVPSEGKK--------SLYT 166
Query: 174 DIQLPQGTDKTSASST 189
D G +K +A +T
Sbjct: 167 DESSKPGKNKRTAITT 182
>gi|17505234 nucleolar and spindle associated protein 1 isoform 2
[Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 3.0
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 59 AAEVCVNDNHREEEAEEVEQQQQQQKKKRCFSPWRCGRTRLNQGTQQHWRETKTENSTD- 117
+A C + EE E+Q K + RC R++ +QQ+ E K N T+
Sbjct: 60 SASSCDETEIQISNQEEAERQPLGHVTK---TRRRCKTVRVDPDSQQNHSEIKISNPTEF 116
Query: 118 -QHVDPLSSD---TQGCPASPYLTLGLREAVGHGKVNRDADISQQGNKGNRAPSLQSLGQ 173
H S D T P+ P AV G NRD+ + +G K SL
Sbjct: 117 QNHEKQESQDLRATAKVPSPPDEHQEAENAVSSG--NRDSKVPSEGKK--------SLYT 166
Query: 174 DIQLPQGTDKTSASST 189
D G +K +A +T
Sbjct: 167 DESSKPGKNKRTAITT 182
>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
sapiens]
Length = 351
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 364 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 423
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 424 APAPCLREAASGLRAAG 440
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
sapiens]
Length = 201
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 364 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 423
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 424 APAPCLREAASGLRAAG 440
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 364 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 423
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 424 APAPCLREAASGLRAAG 440
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 30.4 bits (67), Expect = 3.9
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 27/120 (22%)
Query: 190 AWSDLSGYTAPPKLLNFA--------------QPY-FCQLSAVAAVTNLKPAFADLVRAA 234
A +D GY APPK L PY CQ++A AA A A A
Sbjct: 181 AGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAA-----AAAAAAAAG 235
Query: 235 VGTASASATVFQPPAGLTSTTPFPFLSTISTP-------SELGLTPSHGEPRPREAPYHH 287
G+ A+A V S P+ + +++ P + LG P+ P P P+ H
Sbjct: 236 PGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHPH 295
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 30.4 bits (67), Expect = 3.9
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 399 GRENGGRDGACSIEVLPRTSGRT------HPAPAPCLREAASGLRAAGGPG 443
GR GG G+ S P T R PAP PC SG +A GG G
Sbjct: 157 GRAGGGIPGSSSPH--PGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKG 205
>gi|7662346 ADNP homeobox 2 [Homo sapiens]
Length = 1131
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 176 QLPQGTDKTSASSTAWSDLSGYTAPPKLLNFAQPYFCQLSAVAAVTN 222
Q+P + A++ + G +PP L+N AQ F Q S+ AA TN
Sbjct: 638 QMPIQLLPSGAAAPMAGSMPGMPSPPVLVNAAQSVFVQASSSAADTN 684
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 30.0 bits (66), Expect = 5.0
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 208 QPYFCQLSAVAAVTNLKPAFADLVRAAVGTASASATVFQP-----PAGLTSTTPFPFLST 262
QP F S A+ T+ P AD A+ S T FQP P G S +
Sbjct: 76 QPLFLAASPPASSTSPSPEPAD--------AAGSGTGFQPVAVPPPHGAASRGGAHLTES 127
Query: 263 ISTPSELGLTPSHGEPRPREAP 284
++ P +P+ EP + AP
Sbjct: 128 VAAPDSGASSPAAAEPGEKRAP 149
>gi|239753034 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 418 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 469
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416
Query: 470 KIPPHALAGGRR 481
GGRR
Sbjct: 417 DTEARGPVGGRR 428
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 423 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 478
P P A + AA PG L PSSPPPR +G +PP ALA
Sbjct: 95 PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146
Query: 479 GRRALPREL 487
R L R L
Sbjct: 147 PRPPLARPL 155
>gi|239747584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 418 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 469
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416
Query: 470 KIPPHALAGGRR 481
GGRR
Sbjct: 417 DTEARGPVGGRR 428
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 423 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 478
P P A + AA PG L PSSPPPR +G +PP ALA
Sbjct: 95 PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146
Query: 479 GRRALPREL 487
R L R L
Sbjct: 147 PRPPLARPL 155
>gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 418 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 469
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 110 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 162
Query: 470 KIPPHALAGGRR 481
GGRR
Sbjct: 163 DTEARGPVGGRR 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,301,099
Number of Sequences: 37866
Number of extensions: 1173327
Number of successful extensions: 5555
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 5394
Number of HSP's gapped (non-prelim): 150
length of query: 494
length of database: 18,247,518
effective HSP length: 106
effective length of query: 388
effective length of database: 14,233,722
effective search space: 5522684136
effective search space used: 5522684136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.