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Search of human proteins with 239741283
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741283 PREDICTED: hypothetical protein XP_002344484 [Homo
sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741283 PREDICTED: hypothetical protein XP_002344484 [Homo ... 563 e-161
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens] 542 e-154
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens] 540 e-154
gi|113411427 PREDICTED: hypothetical protein [Homo sapiens] 537 e-153
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 47 1e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 47 1e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 47 2e-05
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|119395716 forkhead box C1 [Homo sapiens] 39 0.004
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 39 0.004
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.005
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 39 0.006
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 38 0.008
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.008
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.008
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.011
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 38 0.011
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239748921 PREDICTED: hypothetical protein XP_002346857 [Homo ... 37 0.018
gi|239742943 PREDICTED: hypothetical protein XP_002342700 [Homo ... 37 0.018
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.018
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 37 0.024
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 37 0.024
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.024
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 36 0.031
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|169179740 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
>gi|239741283 PREDICTED: hypothetical protein XP_002344484 [Homo
sapiens]
Length = 268
Score = 563 bits (1452), Expect = e-161
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT 60
MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT
Sbjct: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT 60
Query: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP
Sbjct: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
Query: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC 180
LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC
Sbjct: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC 180
Query: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG 240
PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG
Sbjct: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG 240
Query: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
PRFWKSKNSPANRQSSALDFWITTSISF
Sbjct: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 542 bits (1396), Expect = e-154
Identities = 258/268 (96%), Positives = 260/268 (97%)
Query: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT 60
MRRAPDWVQRQAAPGSKCRVPWQRREFP RGGRKQPQPGSRQRKQNPISLPGEQNGR AT
Sbjct: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPSRGGRKQPQPGSRQRKQNPISLPGEQNGRKAT 60
Query: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ SRLHSRPPP
Sbjct: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQRSRLHSRPPP 120
Query: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC 180
LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGH+GSA KA SC
Sbjct: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHAGSALKAGSC 180
Query: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG 240
PRLGGGGRGRGEAGAPSRFWLPRSLQQL PNEPRNADVQTLHPTPSHTRRG+RT KGA G
Sbjct: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTPSHTRRGQRTGKGARG 240
Query: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
PRFWKSKNSPANRQSSALDFWITTSISF
Sbjct: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 540 bits (1391), Expect = e-154
Identities = 257/268 (95%), Positives = 259/268 (96%)
Query: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT 60
MRRAPDWVQRQAAPGSKCRVPWQRREFP RGGRKQPQPGSRQRKQNPISLPGEQNGR AT
Sbjct: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPSRGGRKQPQPGSRQRKQNPISLPGEQNGRKAT 60
Query: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ SRLHSRPPP
Sbjct: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQRSRLHSRPPP 120
Query: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC 180
LSPLRKPGGSNQPRSAAAAGT EACLQASGTTRGWKYHALPLRLDPRSGH+GSA KA SC
Sbjct: 121 LSPLRKPGGSNQPRSAAAAGTHEACLQASGTTRGWKYHALPLRLDPRSGHAGSALKAGSC 180
Query: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG 240
PRLGGGGRGRGEAGAPSRFWLPRSLQQL PNEPRNADVQTLHPTPSHTRRG+RT KGA G
Sbjct: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTPSHTRRGQRTGKGARG 240
Query: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
PRFWKSKNSPANRQSSALDFWITTSISF
Sbjct: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
>gi|113411427 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 537 bits (1384), Expect = e-153
Identities = 257/268 (95%), Positives = 259/268 (96%)
Query: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTAT 60
MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISL GEQNGR AT
Sbjct: 1 MRRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLLGEQNGRKAT 60
Query: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ SRLHSRPPP
Sbjct: 61 PQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQRSRLHSRPPP 120
Query: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSC 180
LSPLRKPGGSNQPRSAAAAGTQEACLQA GTT GWKYHALPLRLDPRSGH+GSA KA SC
Sbjct: 121 LSPLRKPGGSNQPRSAAAAGTQEACLQALGTTWGWKYHALPLRLDPRSGHAGSALKAGSC 180
Query: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALG 240
PRLGGGGRGRGEAGAPSRFWLPRSLQQL PNEPRNADVQTLHPTPSHTRRG+RT KGALG
Sbjct: 181 PRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTPSHTRRGQRTGKGALG 240
Query: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
PRFWKSKNSPANRQSSALDFWITTSISF
Sbjct: 241 PRFWKSKNSPANRQSSALDFWITTSISF 268
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 47.4 bits (111), Expect = 1e-05
Identities = 61/226 (26%), Positives = 87/226 (38%), Gaps = 22/226 (9%)
Query: 15 GSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIR-- 72
G+ R P R GRG R P ++ P+S PG +G T + G LG G+R
Sbjct: 84 GTSSRNPASRPPASGRGERAPP---AKNTSPGPVSSPGRASG---TTRPGPLGQKGLRIS 137
Query: 73 GIPSLCQSEGTRWSRR------GRRWAERCPPGV--LGAGRSLRAQGSRLH-SRPPPLSP 123
++ + + T +R RR PG R RA G+ + RP P +
Sbjct: 138 AEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSAR 197
Query: 124 LRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRL 183
R P + PR + ++ ++ + + S R L+ S SA SS R
Sbjct: 198 PRPP--TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
Query: 184 GGGGRGRGEAGAPSRFWLPRSLQQLSPNE---PRNADVQTLHPTPS 226
G RG A A P+ LQ L P + PR L P S
Sbjct: 256 GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS 301
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 47.4 bits (111), Expect = 1e-05
Identities = 61/226 (26%), Positives = 87/226 (38%), Gaps = 22/226 (9%)
Query: 15 GSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIR-- 72
G+ R P R GRG R P ++ P+S PG +G T + G LG G+R
Sbjct: 84 GTSSRNPASRPPASGRGERAPP---AKNTSPGPVSSPGRASG---TTRPGPLGQKGLRIS 137
Query: 73 GIPSLCQSEGTRWSRR------GRRWAERCPPGV--LGAGRSLRAQGSRLH-SRPPPLSP 123
++ + + T +R RR PG R RA G+ + RP P +
Sbjct: 138 AEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSAR 197
Query: 124 LRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRL 183
R P + PR + ++ ++ + + S R L+ S SA SS R
Sbjct: 198 PRPP--TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARS 255
Query: 184 GGGGRGRGEAGAPSRFWLPRSLQQLSPNE---PRNADVQTLHPTPS 226
G RG A A P+ LQ L P + PR L P S
Sbjct: 256 GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS 301
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/227 (26%), Positives = 86/227 (37%), Gaps = 19/227 (8%)
Query: 14 PGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIR- 72
P S R R P GR + P ++ P+S PG +G T + G LG G+R
Sbjct: 71 PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASG---TTRPGPLGQKGLRI 127
Query: 73 -GIPSLCQSEGTRWSRR------GRRWAERCPPGV--LGAGRSLRAQGSRLH-SRPPPLS 122
++ + + T +R RR PG R RA G+ + RP P +
Sbjct: 128 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA 187
Query: 123 PLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPR 182
R P + PR + ++ ++ + + S R L+ S SA SS R
Sbjct: 188 RPRPP--TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPAR 245
Query: 183 LGGGGRGRGEAGAPSRFWLPRSLQQLSPNE---PRNADVQTLHPTPS 226
G RG A A P+ LQ L P + PR L P S
Sbjct: 246 SGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS 292
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 51 PGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ 110
P +G T + G + G ++ R + GRR PG+ AG +
Sbjct: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
Query: 111 GSRLHSRPPPLSPLRKP--------GGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPL 162
G++ P P S LR+P GG S AGT ++R PL
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTP----GGGRSSRAGARRKTPL 184
Query: 163 RLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFW 200
L P GS+ + C LG G G P W
Sbjct: 185 SLCPLKLRKGSSRR---CQGLGSSWGGSGTPPPPRALW 219
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 51 PGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ 110
P +G T + G + G ++ R + GRR PG+ AG +
Sbjct: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
Query: 111 GSRLHSRPPPLSPLRKP--------GGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPL 162
G++ P P S LR+P GG S AGT ++R PL
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTP----GGGRSSRAGARRKTPL 184
Query: 163 RLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFW 200
L P GS+ + C LG G G P W
Sbjct: 185 SLCPLKLRKGSSRR---CQGLGSSWGGSGTPPPPRALW 219
Score = 28.5 bits (62), Expect = 6.4
Identities = 63/202 (31%), Positives = 73/202 (36%), Gaps = 52/202 (25%)
Query: 22 WQRREFPG--RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSL-- 77
W R E G G R P P SR R PG+ R + P A G G G+ L
Sbjct: 366 WARAERHGGSSGARTLPTP-SRAR-------PGKPAPRGSAPPARLRGGGGGSGLTQLVG 417
Query: 78 -------CQSEGTR--WSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPG 128
S GT +RRG R A R P GVL R S P P SP R P
Sbjct: 418 SGRGSGVTHSVGTHALATRRGSR-APR-PVGVLRGVPHFRPLSS-----PAPQSPPRSPS 470
Query: 129 -GSNQPRSAAAAGTQEACLQASGTTRGWKYHALP--LRLDPRSGHSGSAFKASSCPRLGG 185
+ PR A + +C QA + ALP L P H + C GG
Sbjct: 471 VRAFGPRLGAG---RLSCPQAP------RAAALPGIAVLAPSPAHDWGGQRCEGC---GG 518
Query: 186 GG---------RGRGEAGAPSR 198
G RG+ AG P R
Sbjct: 519 GSQPFAGRRAERGKRGAGVPWR 540
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 51 PGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQ 110
P +G T + G + G ++ R + GRR PG+ AG +
Sbjct: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
Query: 111 GSRLHSRPPPLSPLRKP--------GGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPL 162
G++ P P S LR+P GG S AGT ++R PL
Sbjct: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTP----GGGRSSRAGARRKTPL 184
Query: 163 RLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFW 200
L P GS+ + C LG G G P W
Sbjct: 185 SLCPLKLRKGSSRR---CQGLGSSWGGSGTPPPPRALW 219
Score = 28.5 bits (62), Expect = 6.4
Identities = 63/202 (31%), Positives = 73/202 (36%), Gaps = 52/202 (25%)
Query: 22 WQRREFPG--RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSL-- 77
W R E G G R P P SR R PG+ R + P A G G G+ L
Sbjct: 366 WARAERHGGSSGARTLPTP-SRAR-------PGKPAPRGSAPPARLRGGGGGSGLTQLVG 417
Query: 78 -------CQSEGTR--WSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPG 128
S GT +RRG R A R P GVL R S P P SP R P
Sbjct: 418 SGRGSGVTHSVGTHALATRRGSR-APR-PVGVLRGVPHFRPLSS-----PAPQSPPRSPS 470
Query: 129 -GSNQPRSAAAAGTQEACLQASGTTRGWKYHALP--LRLDPRSGHSGSAFKASSCPRLGG 185
+ PR A + +C QA + ALP L P H + C GG
Sbjct: 471 VRAFGPRLGAG---RLSCPQAP------RAAALPGIAVLAPSPAHDWGGQRCEGC---GG 518
Query: 186 GG---------RGRGEAGAPSR 198
G RG+ AG P R
Sbjct: 519 GSQPFAGRRAERGKRGAGVPWR 540
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 39.3 bits (90), Expect = 0.004
Identities = 55/202 (27%), Positives = 75/202 (37%), Gaps = 49/202 (24%)
Query: 34 KQPQPGSRQRKQNPI-----SLPGEQ------------NGRTATPQ-----AGALGALGI 71
K+P P RQ P + PG Q NG +P A ALG+
Sbjct: 192 KEPPPPGRQPPPAPPEQADGNAPGPQPPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSA 251
Query: 72 RGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSN 131
+P + + + S + PPG L + R L G+ S PPP +P P +
Sbjct: 252 AAVPKIESPDSSSSSLS----SGSSPPGSLPSARPLSLDGA--DSAPPPPAPSAPPPHHS 305
Query: 132 Q--------------PRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKA 177
Q P+SAAA + A+ ++R A PL L S S + +
Sbjct: 306 QGFSVDNIMTSLRGSPQSAAAELSSGLLASAAASSRAGI--APPLALGAYSPGQSSLYSS 363
Query: 178 -----SSCPRLGGGGRGRGEAG 194
SS GGGG G G AG
Sbjct: 364 PCSQTSSAGSSGGGGGGAGAAG 385
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 39.3 bits (90), Expect = 0.004
Identities = 45/156 (28%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 37 QPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRGRRWAERC 96
Q R + P S P Q+ R P G ALG+ G + +S G +G
Sbjct: 582 QDSPRLKAVRPTSPP--QDHRPTCPGLGTKDALGLPGESPVKESHGLA---KGSSEETEL 636
Query: 97 PPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWK 156
P V G R + RL P P S L PGG G Q A S RG
Sbjct: 637 PGMVYVVGSHHRLRPWRLSQSPVPSSGLLSPGG---------RGPQGALQSPSAQKRGLS 687
Query: 157 YHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGE 192
P + GS A P G G R GE
Sbjct: 688 PSPSPASKSKKRPLFGSPSPAEKTPHPGPGLRVSGE 723
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.9 bits (89), Expect = 0.005
Identities = 63/261 (24%), Positives = 87/261 (33%), Gaps = 50/261 (19%)
Query: 11 QAAPGSKCRVP-----WQRREFPGRGGRKQPQPGSRQRK-QNPISLPGEQNGRTATPQAG 64
Q + GS+ P W + G G++ G R +P P + R A
Sbjct: 292 QRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAA 351
Query: 65 ALGALGIRGIPSLCQSEGTRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPL 124
A RG S RG R A GAGR R + R SR +P
Sbjct: 352 AAPTPPARGKESPSPRSAPSSQGRGGRAAG-------GAGRRRRRRRRRRRSRSSASAPR 404
Query: 125 RKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLG 184
R+ G +PR A G+ + +A S SGS A
Sbjct: 405 RR--GRRRPRPAPPRGSSRSLSRARS-----------------SSDSGSGRGAPGPGPEP 445
Query: 185 GGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTP-SHTRRGRRTEKGALG--- 240
G RG G G ++ P A + P+P +H RRG K +
Sbjct: 446 GSERGHGGHGKRAK------------ERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPG 493
Query: 241 --PRFWKSKNSPANRQSSALD 259
PR W S SP+ +S + +
Sbjct: 494 PHPRSWSSSRSPSKSRSRSAE 514
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.5 bits (88), Expect = 0.006
Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 25 REFPG-RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGT 83
R FPG +GG P P + + P PG + + G LG G G+P SEG
Sbjct: 976 RGFPGPKGGPGDPGPTGLKGDKGP---PGPVGANGSPGERGPLGPAGGIGLPGQSGSEGP 1032
Query: 84 --RWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGS 130
++G R ER PPG G P PL PL PG +
Sbjct: 1033 VGPAGKKGSR-GERGPPGPTGK-----------DGIPGPLGPLGPPGAA 1069
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 38.1 bits (87), Expect = 0.008
Identities = 56/237 (23%), Positives = 83/237 (35%), Gaps = 30/237 (12%)
Query: 33 RKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQ---SEGTRWSRRG 89
+ +P +Q + P G++ G ++P A GA + S G R +R
Sbjct: 29 KTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRK 88
Query: 90 RRWAERCPPGVLGAGRSLRAQGS-----------RLHSRPPPLSP-----LRKPGGSNQP 133
+ +R P G G R R+ S + P P S RKP QP
Sbjct: 89 PQQPQRRPAGGTGQRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKP---QQP 145
Query: 134 RSAAAAGTQE----ACLQASGTTRGW--KYHALPLRLDPRSGHSGSAFKASS--CPRLGG 185
+ AAGT + C ++ R + A + SGH K C GG
Sbjct: 146 QCRPAAGTGQRRGSGCSPSADQQRAQDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGG 205
Query: 186 GGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALGPR 242
G+ RG +PSR + Q+ +AD Q + +R G G R
Sbjct: 206 TGQRRGSRSSPSRQPAGGTGQRRGSRSSPSADQQRAQDREEEAAQPQRRPAGGTGQR 262
Score = 30.4 bits (67), Expect = 1.7
Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 20/174 (11%)
Query: 28 PGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQ---SEGTR 84
P G + + +Q + P + G++ G +P A A + S G R
Sbjct: 130 PTSSGHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSADQQRAQDREEEATAAPVPTSSGHR 189
Query: 85 WSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKP-GGSNQPRSAAAAGTQE 143
+R R + P G G R R+ SP R+P GG+ Q R + ++ + +
Sbjct: 190 TEKRKRLQLQCQPAGGTGQRRGSRS------------SPSRQPAGGTGQRRGSRSSPSAD 237
Query: 144 ACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPS 197
Q R + A P R A+ P GG G+ RG A AP+
Sbjct: 238 ---QQRAQDRE-EEAAQPQRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPA 287
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 38.1 bits (87), Expect = 0.008
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 30 RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRG 89
RG R+Q Q GSR R ++ G +N R + R S SE RW R G
Sbjct: 15 RGRRRQSQSGSRSRSRSH----GRRNRRRREDEGRRRRRRRSRERRS--DSEEERWQRSG 68
Query: 90 RR--------WAERCPPGVLGAGRSL-RAQGSRLHSRPPPLSPLRK------PGGSNQPR 134
R W R +G R Q +R R SP PG S PR
Sbjct: 69 MRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQSPR 128
Query: 135 SAAAAGTQEACLQ 147
+AAAA +Q+ LQ
Sbjct: 129 AAAAALSQQQSLQ 141
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 38.1 bits (87), Expect = 0.008
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 30 RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRG 89
RG R+Q Q GSR R ++ G +N R + R S SE RW R G
Sbjct: 15 RGRRRQSQSGSRSRSRSH----GRRNRRRREDEGRRRRRRRSRERRS--DSEEERWQRSG 68
Query: 90 RR--------WAERCPPGVLGAGRSL-RAQGSRLHSRPPPLSPLRK------PGGSNQPR 134
R W R +G R Q +R R SP PG S PR
Sbjct: 69 MRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQSPR 128
Query: 135 SAAAAGTQEACLQ 147
+AAAA +Q+ LQ
Sbjct: 129 AAAAALSQQQSLQ 141
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.7 bits (86), Expect = 0.011
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 22/133 (16%)
Query: 27 FPGRGGRKQPQ-PGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRW 85
FPG G PQ PG + PG + T G G +G++G P EG R
Sbjct: 411 FPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 86 SRRGRRWAERCPPGVLGAGRSLRAQGSR----------------LHSRPPPLSPLRKPGG 129
+R E P G+ G GSR P P P PG
Sbjct: 471 AR-----GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGE 525
Query: 130 SNQPRSAAAAGTQ 142
+ +P A G +
Sbjct: 526 AGRPGEAGLPGAK 538
Score = 37.0 bits (84), Expect = 0.018
Identities = 73/266 (27%), Positives = 91/266 (34%), Gaps = 55/266 (20%)
Query: 20 VPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQN--------GRTATP-QAGALGALG 70
+P QR E RG P P KQ P GE+ G P ++G GA G
Sbjct: 963 LPGQRGE---RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPG 1019
Query: 71 IRGIPSLCQSEGTRWSR-----RGRRWAERCP--PGVLG-AGRSLRAQGSRLHSRPP--- 119
G P S G + R G A P PG +G AG+S G R + P
Sbjct: 1020 AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKS----GDRGETGPAGPA 1075
Query: 120 -PLSPL--RKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFK 176
P+ P+ R P G PR ++ RG K H L G GS +
Sbjct: 1076 GPVGPVGARGPAGPQGPRGDKGETGEQG-------DRGIKGHRGFSGLQGPPGPPGSPGE 1128
Query: 177 ASSCPRLG-GGGRG-RGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRT 234
G G RG G AGAP + L + P P RGR
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGP----------------RGRTG 1172
Query: 235 EKGALGPRFWKSKNSPANRQSSALDF 260
+ G +GP P S+ DF
Sbjct: 1173 DAGPVGPPGPPGPPGPPGPPSAGFDF 1198
Score = 30.0 bits (66), Expect = 2.2
Identities = 57/219 (26%), Positives = 68/219 (31%), Gaps = 22/219 (10%)
Query: 30 RGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRG 89
+G R +P P P PG A GA G G G P G +
Sbjct: 367 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ----- 421
Query: 90 RRWAERCPPGVLGAGRSLRAQGSR----LHSRPPPLSPLRKPG--GSNQPRSAAAAGTQE 143
PPG G A GS+ P P+ PG G R A
Sbjct: 422 ---GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT 478
Query: 144 ACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFWLPR 203
G G P D +G G A + S P G GEAG P LP
Sbjct: 479 GLPGPPGERGGPGSRGFP-GADGVAGPKGPAGERGS-PGPAGPKGSPGEAGRPGEAGLPG 536
Query: 204 SLQQL-SPNEPRNADVQTLHPTPSHTRRGRRTEKGALGP 241
+ SP P D +T P P+ G+ G GP
Sbjct: 537 AKGLTGSPGSP-GPDGKTGPPGPA----GQDGRPGPPGP 570
Score = 30.0 bits (66), Expect = 2.2
Identities = 61/245 (24%), Positives = 81/245 (33%), Gaps = 36/245 (14%)
Query: 25 REFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTR 84
R FPG G + P + R N PG A AGA GA G +G P L G R
Sbjct: 679 RGFPGERGVQGPPGPAGPRGAN--GAPGNDG---AKGDAGAPGAPGSQGAPGLQGMPGER 733
Query: 85 WSR-----------RGRRWAERCP--------PGVLGAGRSLRAQGSRLHSRPP----PL 121
+ G + A+ P G +G A G + S P P
Sbjct: 734 GAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPT 793
Query: 122 SPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCP 181
PG +P AG A + G K +G G A A
Sbjct: 794 GARGAPGDRGEPGPPGPAGF--AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG 851
Query: 182 RLGG----GGRG-RGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEK 236
+G G +G RG AG P P + ++ P P P P+ + G + +
Sbjct: 852 PIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA-GKEGGKGPR 910
Query: 237 GALGP 241
G GP
Sbjct: 911 GETGP 915
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 9/120 (7%)
Query: 29 GRGGRKQPQPGSRQRKQNPISLP---GEQNGRTATPQAGALGALGIRGIPSLCQSEGTRW 85
G+G R + P R + P P GE+ A AGA G G +GI G
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 86 SRRGRRWAERCPPGVLGAGRSLRAQG-SRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEA 144
R ER PG+ G QG S P P+ PG + P + G A
Sbjct: 966 QR-----GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGA 1020
Score = 28.9 bits (63), Expect = 4.9
Identities = 44/169 (26%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 31 GGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSRRGR 90
G R P P + PG R GA G G G+P + G +S
Sbjct: 218 GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRG--FSGLDG 275
Query: 91 RWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQ--EACLQA 148
+ P G G S G+ P + P PG +P + AG + + A
Sbjct: 276 AKGDAGPAGPKGEPGSPGENGA-----PGQMGPRGLPGERGRPGAPGPAGARGNDGATGA 330
Query: 149 SGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRG-RGEAGAP 196
+G G A P G G A PR G +G RGE G P
Sbjct: 331 AGPP-GPTGPAGPPGFPGAVGAKGEA--GPQGPRGSEGPQGVRGEPGPP 376
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 37.7 bits (86), Expect = 0.011
Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 36/181 (19%)
Query: 27 FPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWS 86
FPG G + PG P+ +PG++ + A + G G+ G++G P + +
Sbjct: 1221 FPGPPGERG-DPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGA 1279
Query: 87 RRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEACL 146
PG GA +G R PP + L PG + A GT
Sbjct: 1280 -----------PGDKGAPGIFGLKGYRGPPGPPGSAAL--PGSKGDTGNPGAPGTP---- 1322
Query: 147 QASGTTRGWK----------YHALPLRLDPRSGHSGSAFKASSCPRLGGGGRG-RGEAGA 195
T+GW LP PR G G F ++ P G RG +G G
Sbjct: 1323 ----GTKGWAGDSGPQGRPGVFGLPGEKGPR-GEQG--FMGNTGPTGAVGDRGPKGPKGD 1375
Query: 196 P 196
P
Sbjct: 1376 P 1376
Score = 30.8 bits (68), Expect = 1.3
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 27 FPGRGGRKQPQPGSRQRKQNPISL------------PGEQNGRTATPQAGALGALGIRGI 74
+P +GGR QP P Q P L GE+ T G +GA G+ G
Sbjct: 54 YPEKGGRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGF 113
Query: 75 PSLCQSEG--TRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPP-PLSPLRKPG 128
P G + RGR + C G G GS + PP P P + G
Sbjct: 114 PGADGIPGHPGQGGPRGRPGYDGC-NGTQGDSGPQGPPGSEGFTGPPGPQGPKGQKG 169
Score = 28.9 bits (63), Expect = 4.9
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 34 KQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR----RG 89
K+ G RQ P + G + G GA G+RGIP ++G R
Sbjct: 666 KRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDA 725
Query: 90 RRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAG 140
R PPG +G S A G P P+ PG P G
Sbjct: 726 GREGFPGPPGFIGPRGSKGAVGLPGPDGSP--GPIGLPGPDGPPGERGLPG 774
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.014
Identities = 69/268 (25%), Positives = 92/268 (34%), Gaps = 52/268 (19%)
Query: 2 RRAPDWVQRQAAPGSKCRVPWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATP 61
RRAP + AP R+ +FP G K + +R N NGR P
Sbjct: 210 RRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLN--------NGR--GP 259
Query: 62 QAGALGALGIRGIPSLCQSEGTRWSR-RGRRWAERCPPGVLGAG---RSLRAQGS----R 113
++ G G G+ E WSR R R P V +G R R QG
Sbjct: 260 RSRLPGLAG--GV------EPPGWSRERAGAGLSRDSPQVPRSGSWARPCREQGHPAVLA 311
Query: 114 LHSRPPP-----LSPLRKPGGSNQP--------------RSAAAAGTQEACLQASGTTRG 154
L S PP + R PGG+ +P RS GT +A + R
Sbjct: 312 LQSPAPPSLARAAARRRGPGGATEPGFVTLAFRSRLPLLRSPGPEGTSDAARAPAPGLRD 371
Query: 155 WKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPR 214
A P R P FK G G E P+ + ++L +EPR
Sbjct: 372 RDLRAAPPRPRPSQRPVSGLFKVKFFVPQSGPGSSACEVAVPT-----TAGRELLGSEPR 426
Query: 215 NADVQTLHPTPSHTRRGRRTEKGALGPR 242
N ++++ H G R L PR
Sbjct: 427 NGTLESI--CSLHVGNGARAHVLELHPR 452
>gi|239748921 PREDICTED: hypothetical protein XP_002346857 [Homo
sapiens]
Length = 186
Score = 37.0 bits (84), Expect = 0.018
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 10 RQAAPGSKCRVPWQRREFPGRG-----GRKQPQPGSRQRKQNPISLPGEQNGRTATPQAG 64
R+A+PG R+ Q + PGR G P+PG R + + PG A G
Sbjct: 12 RRASPGEG-RLVDQAPDLPGRAAHGPWGAPTPEPGPRAAARG--TSPGCSRPPRAADSPG 68
Query: 65 ALGALGIRGIPSLCQSEGTRWSRRGR----RWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
AL G R +P+ RW R R W PP R +Q P P
Sbjct: 69 ALPLCGTR-VPA-----DGRWGRSARVSETGWEPAPPPFPKRGSRHRNSQTPEPAGLPLP 122
Query: 121 LSPLRKPGGS 130
L P+R G+
Sbjct: 123 LHPIRASAGN 132
>gi|239742943 PREDICTED: hypothetical protein XP_002342700 [Homo
sapiens]
Length = 186
Score = 37.0 bits (84), Expect = 0.018
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 10 RQAAPGSKCRVPWQRREFPGRG-----GRKQPQPGSRQRKQNPISLPGEQNGRTATPQAG 64
R+A+PG R+ Q + PGR G P+PG R + + PG A G
Sbjct: 12 RRASPGEG-RLVDQAPDLPGRAAHGPWGAPTPEPGPRAAARG--TSPGCSRPPRAADSPG 68
Query: 65 ALGALGIRGIPSLCQSEGTRWSRRGR----RWAERCPPGVLGAGRSLRAQGSRLHSRPPP 120
AL G R +P+ RW R R W PP R +Q P P
Sbjct: 69 ALPLCGTR-VPA-----DGRWGRSARVSETGWEPAPPPFPKRGSRHRNSQTPEPAGLPLP 122
Query: 121 LSPLRKPGGS 130
L P+R G+
Sbjct: 123 LHPIRASAGN 132
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.0 bits (84), Expect = 0.018
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 104 GRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLR 163
G+ R+ S+ P SP + + P S A T SG++ + R
Sbjct: 1534 GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKS---R 1590
Query: 164 LDPRSGHSGSA----FKASSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQ 219
L PR SGS+ K + PR G E AP+ LPR + S ++ R +
Sbjct: 1591 LSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE 1650
Query: 220 ---TLHPTPSHTRRGRRTEKGALGPRFWKSKN-SPANRQSS 256
+ +P H + R +G+ K+K+ +P R+SS
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSS 1691
Score = 31.6 bits (70), Expect = 0.76
Identities = 57/241 (23%), Positives = 86/241 (35%), Gaps = 19/241 (7%)
Query: 30 RGGRKQPQPGSRQRKQNPISLPGEQNGRTAT--PQAGALGALGIRGIPSLCQSEGTRWSR 87
RG P+P QR + S + RT ++G+ + R S +S TR R
Sbjct: 1759 RGRSPSPKPRGLQRSR---SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRR 1815
Query: 88 RGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRK-----PGGSNQPRSAAAAGTQ 142
G + R P + S R + R SR PP S R P + RS A+ T
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGR--SRTPPTSRKRSRSRTSPAPWKRSRSRASPATH 1873
Query: 143 EACLQASGTTRGWKYHALPLRLDPRSGHSG-SAFKASSCPRLGGGGRGRGEAGAP----- 196
+ + + + R S S + S R R R + P
Sbjct: 1874 RRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRR 1933
Query: 197 -SRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALGPRFWKSKNSPANRQS 255
SR P + ++ P ++ TP TRR R+ + R +S+ SP R+
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRR 1993
Query: 256 S 256
S
Sbjct: 1994 S 1994
Score = 30.0 bits (66), Expect = 2.2
Identities = 62/264 (23%), Positives = 84/264 (31%), Gaps = 46/264 (17%)
Query: 21 PWQRREFPGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIP----S 76
P RE K G +R ++ P + GR+ +P G R S
Sbjct: 447 PGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHS 506
Query: 77 LCQSEGTRWSRRGRRWAERCPPGVLGA------------------GRSLRAQGSRLHSRP 118
+S R SR +RW P G GRS A+ R HSR
Sbjct: 507 RSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRS 566
Query: 119 PPLSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRS------GHSG 172
P G ++ R+ A G + A +R P R RS G S
Sbjct: 567 PATR------GRSRSRTPARRGRSRSRTPARRRSRS----RTPTRRRSRSRTPARRGRSR 616
Query: 173 SAFKASSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGR 232
S A R R R + +P+R RS + S R ++ P RRGR
Sbjct: 617 SRTPARRRSRTRSPVRRRSRSRSPAR----RSGRSRSRTPARRGRSRSRTP----ARRGR 668
Query: 233 RTEKGALGPRFWKSKNSPANRQSS 256
+ +PA R S
Sbjct: 669 SRSRTPARRSGRSRSRTPARRGRS 692
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 36.6 bits (83), Expect = 0.024
Identities = 57/224 (25%), Positives = 76/224 (33%), Gaps = 40/224 (17%)
Query: 29 GRGGRKQP-QPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
G G K P P R Q P+ LPG + G G +G G +GT+ ++
Sbjct: 962 GVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG------QKGTKGNK 1015
Query: 88 RGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQ-EACL 146
E PPG P P+ P+ +PG + A G Q
Sbjct: 1016 -----GEHGPPG-----------------PPGPIGPVGQPGAAGADGEPGARGPQGHFGA 1053
Query: 147 QASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLG----GGGRG-RGEAGAPSRFWL 201
+ TRG+ P+ L G SG + +G G RG G GA
Sbjct: 1054 KGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGP 1113
Query: 202 PRSLQQLSP----NEPRNADVQTLHPTPS-HTRRGRRTEKGALG 240
P + L P EP + + P RG R EKG G
Sbjct: 1114 PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1157
Score = 30.8 bits (68), Expect = 1.3
Identities = 55/228 (24%), Positives = 77/228 (33%), Gaps = 41/228 (17%)
Query: 28 PGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
PG GG + R ++ PG+ T + G G LG RG SEG R
Sbjct: 1192 PGEGGPRGQDGAKGDRGED--GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG----R 1245
Query: 88 RGRRWAERCP-----PGVLG----AGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAA 138
+G + A+ P PG G AG + + L P + +PG + Q
Sbjct: 1246 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1305
Query: 139 AGTQE-ACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRG----RGEA 193
G L+ +G K H + L G G G RG +G
Sbjct: 1306 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK-----------GDRGLPGPQGSP 1354
Query: 194 GAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALGP 241
G +P + + P P P P+ G + KGA GP
Sbjct: 1355 GQKGEMGIPGASGPIGPGGPPGL------PGPA----GPKGAKGATGP 1392
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 36.6 bits (83), Expect = 0.024
Identities = 57/224 (25%), Positives = 76/224 (33%), Gaps = 40/224 (17%)
Query: 29 GRGGRKQP-QPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
G G K P P R Q P+ LPG + G G +G G +GT+ ++
Sbjct: 941 GVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG------QKGTKGNK 994
Query: 88 RGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQ-EACL 146
E PPG P P+ P+ +PG + A G Q
Sbjct: 995 -----GEHGPPG-----------------PPGPIGPVGQPGAAGADGEPGARGPQGHFGA 1032
Query: 147 QASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLG----GGGRG-RGEAGAPSRFWL 201
+ TRG+ P+ L G SG + +G G RG G GA
Sbjct: 1033 KGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGP 1092
Query: 202 PRSLQQLSP----NEPRNADVQTLHPTPS-HTRRGRRTEKGALG 240
P + L P EP + + P RG R EKG G
Sbjct: 1093 PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1136
Score = 30.8 bits (68), Expect = 1.3
Identities = 55/228 (24%), Positives = 77/228 (33%), Gaps = 41/228 (17%)
Query: 28 PGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
PG GG + R ++ PG+ T + G G LG RG SEG R
Sbjct: 1171 PGEGGPRGQDGAKGDRGED--GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG----R 1224
Query: 88 RGRRWAERCP-----PGVLG----AGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAA 138
+G + A+ P PG G AG + + L P + +PG + Q
Sbjct: 1225 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1284
Query: 139 AGTQE-ACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRG----RGEA 193
G L+ +G K H + L G G G RG +G
Sbjct: 1285 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK-----------GDRGLPGPQGSP 1333
Query: 194 GAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALGP 241
G +P + + P P P P+ G + KGA GP
Sbjct: 1334 GQKGEMGIPGASGPIGPGGPPGL------PGPA----GPKGAKGATGP 1371
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 36.6 bits (83), Expect = 0.024
Identities = 57/224 (25%), Positives = 76/224 (33%), Gaps = 40/224 (17%)
Query: 29 GRGGRKQP-QPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
G G K P P R Q P+ LPG + G G +G G +GT+ ++
Sbjct: 1048 GVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG------QKGTKGNK 1101
Query: 88 RGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQ-EACL 146
E PPG P P+ P+ +PG + A G Q
Sbjct: 1102 -----GEHGPPG-----------------PPGPIGPVGQPGAAGADGEPGARGPQGHFGA 1139
Query: 147 QASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLG----GGGRG-RGEAGAPSRFWL 201
+ TRG+ P+ L G SG + +G G RG G GA
Sbjct: 1140 KGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGP 1199
Query: 202 PRSLQQLSP----NEPRNADVQTLHPTPS-HTRRGRRTEKGALG 240
P + L P EP + + P RG R EKG G
Sbjct: 1200 PGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1243
Score = 30.8 bits (68), Expect = 1.3
Identities = 55/228 (24%), Positives = 77/228 (33%), Gaps = 41/228 (17%)
Query: 28 PGRGGRKQPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEGTRWSR 87
PG GG + R ++ PG+ T + G G LG RG SEG R
Sbjct: 1278 PGEGGPRGQDGAKGDRGED--GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG----R 1331
Query: 88 RGRRWAERCP-----PGVLG----AGRSLRAQGSRLHSRPPPLSPLRKPGGSNQPRSAAA 138
+G + A+ P PG G AG + + L P + +PG + Q
Sbjct: 1332 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP 1391
Query: 139 AGTQE-ACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRG----RGEA 193
G L+ +G K H + L G G G RG +G
Sbjct: 1392 VGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK-----------GDRGLPGPQGSP 1440
Query: 194 GAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRRTEKGALGP 241
G +P + + P P P P+ G + KGA GP
Sbjct: 1441 GQKGEMGIPGASGPIGPGGPPGL------PGPA----GPKGAKGATGP 1478
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 36.2 bits (82), Expect = 0.031
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 28 PGRGGRK-----QPQPGSRQRKQNPISLPGEQNGRTATPQAGALGALGIRGIPSLCQSEG 82
PGR G K Q PG R PG++ + GA G P+ + E
Sbjct: 1478 PGRKGEKGDEGSQGSPGKR-------GTPGDRGAKGLRGDPGAPGVDSSIEGPTGLKGER 1530
Query: 83 TRWSRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLSPLRKPGG 129
R RRG W PPG G+ R A G R H+ P + + P G
Sbjct: 1531 GRQGRRG--WPG--PPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDG 1573
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 36.2 bits (82), Expect = 0.031
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 119 PPLSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGSAFKAS 178
PP +R G N P A +AC S R ++ +L L +G S +A
Sbjct: 67 PPTRAIRMQGIRNTPGGDPKA---QACFPTSAANRSFQPRSLGGSLAGIAGPRPSPCQAH 123
Query: 179 SCPRLGGGGRGRGEAGAPSRFWLPRSLQQLSPNEPRNADVQTLHPTPSHTRRGRR 233
C R GGGGR A A + PR P PR + LHP+ + G R
Sbjct: 124 DCER-GGGGRPSHRAAAVDQ-GRPR------PRVPRGQPLPGLHPSAAAPGVGGR 170
>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 36.2 bits (82), Expect = 0.031
Identities = 44/167 (26%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 86 SRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLS-PLRKPGGSNQPRSAAAAGTQEA 144
SR G RW+ + P G GA A GS S P + P R+P P + + A
Sbjct: 35 SRGGARWSSK-PRGPGGA-----AAGSESQSPPRGVPRPSRRPLAHPLPCESVSPCAWPA 88
Query: 145 CLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFW---- 200
C SG + W LP + + H G ++ + G RGE+ S
Sbjct: 89 CFGPSGLPQRWPKGRLP-SAEQVTNHFGGHGIDTAALEIRDKGPERGESRLRSESGSREN 147
Query: 201 ----LPRSLQQLSPNEPR--------NADVQTLHPTPSHTRRGRRTE 235
LP +L+ PN + Q PTP HT+ +E
Sbjct: 148 PPSPLPAALESQKPNSAQLSVWRARPGLQAQIHVPTPEHTQTPPESE 194
>gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 36.2 bits (82), Expect = 0.031
Identities = 44/167 (26%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 86 SRRGRRWAERCPPGVLGAGRSLRAQGSRLHSRPPPLS-PLRKPGGSNQPRSAAAAGTQEA 144
SR G RW+ + P G GA A GS S P + P R+P P + + A
Sbjct: 35 SRGGARWSSK-PRGPGGA-----AAGSESQSPPRGVPRPSRRPLAHPLPCESVSPCAWPA 88
Query: 145 CLQASGTTRGWKYHALPLRLDPRSGHSGSAFKASSCPRLGGGGRGRGEAGAPSRFW---- 200
C SG + W LP + + H G ++ + G RGE+ S
Sbjct: 89 CFGPSGLPQRWPKGRLP-SAEQVTNHFGGHGIDTAALEIRDKGPERGESRLRSESGSREN 147
Query: 201 ----LPRSLQQLSPNEPR--------NADVQTLHPTPSHTRRGRRTE 235
LP +L+ PN + Q PTP HT+ +E
Sbjct: 148 PPSPLPAALESQKPNSAQLSVWRARPGLQAQIHVPTPEHTQTPPESE 194
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,145,455
Number of Sequences: 37866
Number of extensions: 843790
Number of successful extensions: 5137
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 4579
Number of HSP's gapped (non-prelim): 969
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.