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Search of human proteins with 239741256
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 580 e-166
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 515 e-146
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 514 e-146
gi|5032161 elongin C [Homo sapiens] 174 8e-44
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 159 3e-39
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 159 3e-39
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 159 3e-39
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ... 91 2e-18
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ... 91 2e-18
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens] 84 1e-16
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens] 71 1e-12
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ... 35 0.099
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ... 35 0.099
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro... 33 0.22
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro... 33 0.22
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro... 33 0.22
gi|55956899 keratin 9 [Homo sapiens] 32 0.84
gi|194018511 keratin 77 [Homo sapiens] 30 1.9
gi|195972866 keratin 10 [Homo sapiens] 30 2.4
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 29 4.2
gi|169163848 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 29 4.2
gi|169164621 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|169163099 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 29 4.2
gi|20143973 hedgehog-interacting protein [Homo sapiens] 29 5.4
gi|10337595 protein phosphatase 1A isoform 1 [Homo sapiens] 29 5.4
gi|29557855 protein phosphatase 1A isoform 2 [Homo sapiens] 29 5.4
gi|193211600 protein phosphatase 1A isoform 3 [Homo sapiens] 29 5.4
gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens] 28 7.1
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 580 bits (1496), Expect = e-166
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES 120
SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES 120
Query: 121 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK 180
GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK
Sbjct: 121 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK 180
Query: 181 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 240
KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI
Sbjct: 181 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 240
Query: 241 SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC
Sbjct: 241 SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 515 bits (1327), Expect = e-146
Identities = 262/287 (91%), Positives = 263/287 (91%), Gaps = 18/287 (6%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES 120
SFELIKCGSAYECSKLVQTRTAVTGG+ AYKRQSGIGCES
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGE------------------LPRAYKRQSGIGCES 102
Query: 121 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK 180
GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLE RGAALLEFI GSDGRK
Sbjct: 103 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRK 162
Query: 181 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 240
KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI
Sbjct: 163 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 222
Query: 241 SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
SSHVLSKVCMYVTY GHYTNSSTEILKFPAAPQIAPELLMTVNFLDC
Sbjct: 223 SSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 514 bits (1325), Expect = e-146
Identities = 261/287 (90%), Positives = 263/287 (91%), Gaps = 18/287 (6%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES 120
SFELIKCGSAYECSKLVQTRTAVTGG+ AYKRQSGIGCES
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGE------------------LPRAYKRQSGIGCES 102
Query: 121 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK 180
GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLE RGAALLEFI GSDGRK
Sbjct: 103 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRK 162
Query: 181 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 240
KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI
Sbjct: 163 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 222
Query: 241 SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
SSHVLSKVCMYVTY GHYTNSSTEILKFPAAPQ+APELLMTVNFLDC
Sbjct: 223 SSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFLDC 269
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 174 bits (441), Expect = 8e-44
Identities = 86/111 (77%), Positives = 94/111 (84%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
DG +KTYG CEGPDAMYVKLISS GH+ IVKRE+A+TS TIKAMLSGPGQ AENE +EV+
Sbjct: 2 DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVN 61
Query: 237 FREISSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
FREI SHVLSKVCMY TY YTNSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 159 bits (401), Expect = 3e-39
Identities = 82/114 (71%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 237 FREISSHVLSKV---CMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
FREI SHVLSKV CMY Y Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 159 bits (401), Expect = 3e-39
Identities = 82/114 (71%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 237 FREISSHVLSKV---CMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
FREI SHVLSKV CMY Y Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 159 bits (401), Expect = 3e-39
Identities = 82/114 (71%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 237 FREISSHVLSKV---CMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
FREI SHVLSKV CMY Y Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
Length = 120
Score = 90.5 bits (223), Expect = 2e-18
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 7/113 (6%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
FREI +K C+Y TY HY+NSSTEI +F A E+LM +FLD
Sbjct: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
Length = 120
Score = 90.5 bits (223), Expect = 2e-18
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 7/113 (6%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
FREI +K C+Y TY HY+NSSTEI +F A E+LM +FLD
Sbjct: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
Length = 181
Score = 84.3 bits (207), Expect = 1e-16
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFL 285
FREI +K C+Y T HY+NSSTEI +F A E+LM +FL
Sbjct: 62 FREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
Length = 101
Score = 70.9 bits (172), Expect = 1e-12
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 177 DGRKKTYGDCEGPDAMYVKLISSSGH----KVIVKREYAVTSITIKAMLSGPGQLAENEI 232
D +KTY CE + M S+G+ + +VK A TS T+K +L+GP AE
Sbjct: 2 DEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
Query: 233 SEVSFREISSHVLSKVCMYVTYNGHYTNSSTEILKFP 269
EV+ R+ S VL K C Y TY HYT SSTEI KFP
Sbjct: 57 IEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
Length = 163
Score = 34.7 bits (78), Expect = 0.099
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
+KL SS G V E A S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 254 YN 255
++
Sbjct: 64 HH 65
>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
sapiens]
Length = 160
Score = 34.7 bits (78), Expect = 0.099
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
+KL SS G V E A S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 254 YN 255
++
Sbjct: 64 HH 65
>gi|239755758 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.5 bits (75), Expect = 0.22
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 254 YN 255
++
Sbjct: 64 HH 65
>gi|239750260 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.5 bits (75), Expect = 0.22
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 254 YN 255
++
Sbjct: 64 HH 65
>gi|239744568 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.5 bits (75), Expect = 0.22
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 254 YN 255
++
Sbjct: 64 HH 65
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 31.6 bits (70), Expect = 0.84
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 85 GGKGFAGGEGRGWEGGV-RRVAKGEAYKRQSGIGCESGHFSCRRGGGRDDIQAVGNHLVG 143
GG G GG G G+ GG R G ++ SG G ESG GGG + + G + G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGG---SYGGGEEASGSGGGYGGG 616
Query: 144 S 144
S
Sbjct: 617 S 617
Score = 28.1 bits (61), Expect = 9.3
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 84 TGGKGFAGGEGRGWEGGV-RRVAKGEAYKRQSGIGCESGHFSCRRGGGRDDIQAVGNHLV 142
+GG GG G G+ GG R G +Y SG G SG GG + G H
Sbjct: 493 SGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSG 552
Query: 143 GSKPN 147
GS N
Sbjct: 553 GSGGN 557
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 85 GGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCESGHFSCRRGGG 130
G G+ GG G G+ GG R +G + +SG G SG C GGG
Sbjct: 507 GSGGYGGGSGGGYGGG--RSYRGGGARGRSGGGYGSG---CGGGGG 547
Score = 29.3 bits (64), Expect = 4.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 85 GGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCESGHFSCRRGGGRDDIQAV 137
GG G G GR + GG R G Y G G S S R G G +Q +
Sbjct: 513 GGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSGRGSSRVQII 565
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 30.0 bits (66), Expect = 2.4
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 13 ASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTPSFELIKCGSAYE 72
A K+SL ++ + V L + ++S + + ++A E +T +L+ E
Sbjct: 384 ALKQSLEASLAETEGRYCVQLSQIQAQISALEEQLQQIRAETECQNTEYQQLLDIKIRLE 443
Query: 73 CSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCESGHFSCRRGG 129
+QT ++ G+G +GG GRG G + SG G GH GG
Sbjct: 444 NE--IQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGG 498
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 4.2
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 102 RRVAKGEAYKRQSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL---- 155
+R++ + + +SG +SG + G DD+QA+ L K D L NL
Sbjct: 146 QRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIE 205
Query: 156 -AICEQDLERRGAALLEFIAGSDGRKKTYGDCEGPDAMYVKLISSSG 201
C+Q +E + A E S +K D +VK+ S G
Sbjct: 206 KEHCKQGVEVKNAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|169163848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 72 EC--SKLVQTRTAVTGGKGFAGGEG---RGW--EGGVRRVAKGEAYKRQSGIGCES 120
EC + L T GG+G AGG+G RGW EGG R + + +++ I S
Sbjct: 27 ECVPTSLAAAGTRGPGGRGLAGGKGKLKRGWEREGGSGRTGRRVHFHKKAEIAVGS 82
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 4.2
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 102 RRVAKGEAYKRQSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL---- 155
+R++ + + +SG +SG + G DD+QA+ L K D L NL
Sbjct: 146 QRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIE 205
Query: 156 -AICEQDLERRGAALLEFIAGSDGRKKTYGDCEGPDAMYVKLISSSG 201
C+Q +E + A E S +K D +VK+ S G
Sbjct: 206 KEHCKQGVEVKNAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|169164621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 72 EC--SKLVQTRTAVTGGKGFAGGEG---RGW--EGGVRRVAKGEAYKRQSGIGCES 120
EC + L T GG+G AGG+G RGW EGG R + + +++ I S
Sbjct: 27 ECVPTSLAAAGTRGPGGRGLAGGKGKLKRGWEREGGSGRTGRRVHFHKKAEIAVGS 82
>gi|169163099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 72 EC--SKLVQTRTAVTGGKGFAGGEG---RGW--EGGVRRVAKGEAYKRQSGIGCES 120
EC + L T GG+G AGG+G RGW EGG R + + +++ I S
Sbjct: 27 ECVPTSLAAAGTRGPGGRGLAGGKGKLKRGWEREGGSGRTGRRVHFHKKAEIAVGS 82
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 4.2
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 102 RRVAKGEAYKRQSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL---- 155
+R++ + + +SG +SG + G DD+QA+ L K D L NL
Sbjct: 146 QRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIE 205
Query: 156 -AICEQDLERRGAALLEFIAGSDGRKKTYGDCEGPDAMYVKLISSSG 201
C+Q +E + A E S +K D +VK+ S G
Sbjct: 206 KEHCKQGVEVKNAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|20143973 hedgehog-interacting protein [Homo sapiens]
Length = 700
Score = 28.9 bits (63), Expect = 5.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 72 ECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCESGHFSCRRG 128
ECS+L + GK GWEG R AK E R G+ C++G
Sbjct: 607 ECSRLCRNGYCTPTGKCCCSP---GWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKG 660
>gi|10337595 protein phosphatase 1A isoform 1 [Homo sapiens]
Length = 382
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 245 LSKVCMYVT----YNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
L KVC V Y G N S ++ FP AP+++PE + LD
Sbjct: 264 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 309
>gi|29557855 protein phosphatase 1A isoform 2 [Homo sapiens]
Length = 324
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 245 LSKVCMYVT----YNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
L KVC V Y G N S ++ FP AP+++PE + LD
Sbjct: 264 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 309
>gi|193211600 protein phosphatase 1A isoform 3 [Homo sapiens]
Length = 455
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 245 LSKVCMYVT----YNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
L KVC V Y G N S ++ FP AP+++PE + LD
Sbjct: 337 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 382
>gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens]
Length = 571
Score = 28.5 bits (62), Expect = 7.1
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 202 HKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYNGHYTNS 261
HKV++ A S KAM +G L+E E SEV F+ I L + Y + +
Sbjct: 49 HKVVL----ASVSPYFKAMFTG--NLSEKENSEVEFQCIDETALQAIVEYAYTGTVFISQ 102
Query: 262 STEILKFPAAPQIAPELLM 280
T PAA + +L++
Sbjct: 103 DTVESLLPAANLLQIKLVL 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,281,490
Number of Sequences: 37866
Number of extensions: 500362
Number of successful extensions: 1593
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1546
Number of HSP's gapped (non-prelim): 50
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.