Guide to the Human Genome
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Name: LOC100128131 Sequence: fasta or formatted (163aa) NCBI GI: 169163099
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {163aa} PREDICTED: hypothetical protein
alt mRNA {163aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         16           3
 C cysteine            5.5          9           2
 D aspartate           0.6          1           1
 E glutamate           8.0         13           2
 F phenylalanine       2.5          4           1
 G glycine            15.3         25           3
 H histidine           2.5          4           1
 I isoleucine          3.1          5           1
 K lysine              6.1         10           2
 L leucine             6.1         10           1
 M methionine          2.5          4           2
 N asparagine          0.6          1           1
 P proline             8.6         14           1
 Q glutamine           2.5          4           1
 R arginine            9.8         16           2
 S serine              8.0         13           1
 T threonine           3.1          5           1
 V valine              3.7          6           1
 W tryptophan          1.8          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128131          1.000   PREDICTED: hypothetical protein 
LOC100128131          1.000   PREDICTED: hypothetical protein 
ZNF281                0.043   zinc finger protein 281 
LOC100293935          0.028   PREDICTED: hypothetical protein 
LOC100287289          0.028   PREDICTED: hypothetical protein 
LOC100287289          0.028   PREDICTED: hypothetical protein XP_002343656 
LOC100128528          0.028   PREDICTED: hypothetical protein 
LOC100128528          0.028   PREDICTED: hypothetical protein 
LOC100128528          0.028   PREDICTED: hypothetical protein 
BRWD3                 0.022   bromodomain and WD repeat domain containing 3 [Homo...
LOC728317             0.022   PREDICTED: hypothetical protein 
LOC728317             0.022   PREDICTED: hypothetical protein 
LOC100130825          0.022   PREDICTED: hypothetical protein 
SIN3B                 0.022   SIN3 homolog B, transcription regulator 
LOC100292370          0.019   PREDICTED: hypothetical protein 
LOR                   0.019   loricrin 
SHOX2                 0.019   short stature homeobox 2 isoform a 
SPRN                  0.019   shadow of prion protein 
C20orf160             0.019   hypothetical protein LOC140706 
LOC100292048          0.016   PREDICTED: hypothetical protein XP_002344877 
LOC100289661          0.016   PREDICTED: hypothetical protein 
LOC100289661          0.016   PREDICTED: hypothetical protein XP_002343723 
LOC100289126          0.016   PREDICTED: hypothetical protein XP_002343381 
FLNC                  0.016   gamma filamin isoform b 
FLNC                  0.016   gamma filamin isoform a 
LOC100291411          0.016   PREDICTED: hypothetical protein XP_002348184 
LOC100288664          0.016   PREDICTED: hypothetical protein XP_002343845 
C16orf11              0.016   hypothetical protein LOC146325 
CCDC9                 0.016   coiled-coil domain containing 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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