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Search of human proteins with 239741248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741248 PREDICTED: hypothetical protein XP_002342105 [Homo
sapiens]
(92 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752871 PREDICTED: hypothetical protein [Homo sapiens] 193 3e-50
gi|239747423 PREDICTED: hypothetical protein XP_002346701 [Homo ... 193 3e-50
gi|239741248 PREDICTED: hypothetical protein XP_002342105 [Homo ... 193 3e-50
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 41 2e-04
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 35 0.013
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 32 0.14
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 32 0.14
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 32 0.14
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 32 0.14
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 31 0.25
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 31 0.25
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 31 0.25
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 0.25
gi|146219841 PNMA-like 2 [Homo sapiens] 31 0.25
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 30 0.32
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 30 0.32
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 30 0.32
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 30 0.32
gi|46430491 scratch 2 protein [Homo sapiens] 30 0.32
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa... 30 0.32
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ... 30 0.42
>gi|239752871 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 193 bits (490), Expect = 3e-50
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
>gi|239747423 PREDICTED: hypothetical protein XP_002346701 [Homo
sapiens]
Length = 92
Score = 193 bits (490), Expect = 3e-50
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
>gi|239741248 PREDICTED: hypothetical protein XP_002342105 [Homo
sapiens]
Length = 92
Score = 193 bits (490), Expect = 3e-50
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR
Sbjct: 1 MSCSFSSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGR 60
Query: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK
Sbjct: 61 PSFGGSRPPSALRAANRSPVRGRLQGHGLTRK 92
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 40.8 bits (94), Expect = 2e-04
Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 6 SSLPVAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGD---RGGR-- 60
++ P P G P+ S + GG AAG AGR RRRRRR R R GR
Sbjct: 351 AAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410
Query: 61 ----PSFGGSRPPSALRAANRS----------PVRGRLQGHG 88
P G SR S R+++ S P G +GHG
Sbjct: 411 PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHG 452
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 35.0 bits (79), Expect = 0.013
Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 11 APRA-----GARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGG 65
AP+A GAR+ RP+ HR EAAG P R RGR G GGR
Sbjct: 871 APKAESGEPGAREERPR---PHRSHSKEAAG------PPEARSERGRGPGPEGGRRH--- 918
Query: 66 SRPPSALRAANRSPVRGRLQGH 87
R S AA R P R R H
Sbjct: 919 HRRGSPEEAAEREPRRHRAHRH 940
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 31 GGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
GG+ G G R RG Y GDRGG +GG R
Sbjct: 506 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 542
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 27 HREAGGEAAGQAGR--IFPSRRRRRRGRYHGDRGGRPSFGGSR 67
+R GG G GR R G GDRGG +FGG R
Sbjct: 171 NRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 213
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 31 GGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
GG+ G G R RG Y GDRGG +GG R
Sbjct: 509 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDR 545
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 27 HREAGGEAAGQAGR--IFPSRRRRRRGRYHGDRGGRPSFGGSR 67
+R GG G GR R G GDRGG +FGG R
Sbjct: 174 NRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 216
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 11 APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
A AGAR P R G AA +A R P RR RGR G + RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 11 APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
A AGAR P R G AA +A R P RR RGR G + RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 11 APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRP 61
A AGAR P R G AA +A R P RR RGR G + RP
Sbjct: 136 AIEAGAR------PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAARP 180
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 4 SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
+FS++P P ++G+R LRP PG S R + AA QA R P R
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160
Query: 49 -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
RG+ G RPS G +PP RAA R R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 4 SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
+FS++P P ++G+R LRP PG S R + AA QA R P R
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160
Query: 49 -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
RG+ G RPS G +PP RAA R R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 4 SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
+FS++P P ++G+R LRP PG S R + AA QA R P R
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160
Query: 49 -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
RG+ G RPS G +PP RAA R R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.25
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 4 SFSSLPVAP---RAGARDLRPQCPG------SHREAGGEAAGQAG-RIFPSRRRR----- 48
+FS++P P ++G+R LRP PG S R + AA QA R P R
Sbjct: 102 TFSAVPPRPSQHQSGSR-LRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGP 160
Query: 49 -RRGRYHGDRGGRPSFGGSRPP----SALRAANRSPVR 81
RG+ G RPS G +PP RAA R R
Sbjct: 161 GSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSAR 198
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 11 APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRR----RGRYHGDRGGRPSFGGS 66
+P+ R PQ PG R + G++ R R RGR R S
Sbjct: 527 SPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS 586
Query: 67 RPPSALRAANRSPVRGRLQGHGLTRK 92
R P+ R+ +R+P R R + R+
Sbjct: 587 RTPARRRSRSRTPTRRRSRSRTPARR 612
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 25 GSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSAL-RAANRSPVRGR 83
G R G++ P+RR R R R R GR SR P+ R+ +R+P RGR
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSR---SRTPARRGRSRSRTPRRGR 701
Query: 84 LQGHGLTRK 92
+ L R+
Sbjct: 702 SRSRSLVRR 710
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 11 APRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRR-----RGRYHGDRGGRPSFGG 65
A R + P G R G++ P+RRR R R R R
Sbjct: 557 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSR 616
Query: 66 SRPPSALRAANRSPVRGRLQGHGLTRK 92
SR P+ R+ RSPVR R + R+
Sbjct: 617 SRTPARRRSRTRSPVRRRSRSRSPARR 643
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 11 APRAGARDLRPQCPGSHREA--GGEAAGQAGRIFPSRRRRRRGR---------------- 52
A AG P P S +A GE GQAG + + R RRGR
Sbjct: 118 AAEAGTPGEAPTPPASETQAQDSGEVTGQAGSLLGAARNPRRGRRGRRNRTRRNRLTQKG 177
Query: 53 YHGDRGGRPS 62
RGGRPS
Sbjct: 178 KKRSRGGRPS 187
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 24 PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
PG H EAGG G AG++ R HG RG + G A + +R
Sbjct: 536 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 590
Query: 84 LQGHG 88
QG G
Sbjct: 591 AQGAG 595
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 33 EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
E GQ GR P + RR GR HG D GG P G A R A G+L
Sbjct: 373 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 432
Query: 86 G 86
G
Sbjct: 433 G 433
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 10 VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
+ P G +D G R GGEA +R+R R G GDR P G + P
Sbjct: 134 MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 182
Query: 70 SALRAANRSPVRGRLQGHG 88
A A+R RGR G
Sbjct: 183 PAPLLASRPRPRGRCAPDG 201
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 24 PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
PG H EAGG G AG++ R HG RG + G A + +R
Sbjct: 490 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 544
Query: 84 LQGHG 88
QG G
Sbjct: 545 AQGAG 549
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 33 EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
E GQ GR P + RR GR HG D GG P G A R A G+L
Sbjct: 230 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 289
Query: 86 G 86
G
Sbjct: 290 G 290
>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 10 VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
+ P G +D G R GGEA +R+R R G GDR P G + P
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 49
Query: 70 SALRAANRSPVRGRLQGHG 88
A A+R RGR G
Sbjct: 50 PAPLLASRPRPRGRCAPDG 68
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 33 EAAGQAGRIFPSRRRRRRGRYHG------DRGGRPSFGGSRPPSAL-RAANRSPVRGRLQ 85
E GQ GR P + RR GR HG D GG P G A R A G+L
Sbjct: 230 EVEGQGGRGRPGQSLRRSGRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLA 289
Query: 86 G 86
G
Sbjct: 290 G 290
>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 10 VAPRAGARDLRPQCPGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPP 69
+ P G +D G R GGEA +R+R R G GDR P G + P
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEAL--------TRKRARGGAVPGDR---PGGGAASPL 49
Query: 70 SALRAANRSPVRGRLQGHG 88
A A+R RGR G
Sbjct: 50 PAPLLASRPRPRGRCAPDG 68
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 24 PGSHREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSRPPSALRAANRSPVRGR 83
PG H EAGG G AG++ R HG RG + G A + +R
Sbjct: 490 PGWHSEAGGRRDGGAGQVVQGLRGP-----HGRRGPQVQAGWQAGRQAAALGRGAALRRA 544
Query: 84 LQGHG 88
QG G
Sbjct: 545 AQGAG 549
>gi|46430491 scratch 2 protein [Homo sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 9 PVAPRAGARDLRPQCPGSHREAGGEAAG------QAGRIFPSRRRRRRGRYHGDRGGRPS 62
P AP + PQ S R GEAA A I R RRRRG GD GG
Sbjct: 75 PAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRRRRGGGGGDAGGSGD 134
Query: 63 FGGS 66
GG+
Sbjct: 135 AGGA 138
>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
sapiens]
Length = 272
Score = 30.4 bits (67), Expect = 0.32
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 9 PVAPRAGARDLRPQCPGS-HREAGGEAAGQAGRIFPSRRRRRRGRYHGDRGGRPSFGGSR 67
PV RAG L Q GS + EAGG A S R+ G G+RGG P+ G
Sbjct: 38 PVYARAG---LLSQAKGSAYLEAGGTKVLCA----VSGPRQAEG---GERGGGPAGAGGE 87
Query: 68 PPSALRAA-----NRSPVRGR 83
P+ALR R+P GR
Sbjct: 88 APAALRGRLLCDFRRAPFAGR 108
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 9 PVAPRAGARDLRPQCPGSHREAGGEAAGQAG-RIFP---SRRRRRRGRYHGDRGGRPSFG 64
P P A LR + R GE G++G R+ P +RRR RRG D G SF
Sbjct: 13 PPEPAAADTPLRRR-----RRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEATSFP 67
Query: 65 G 65
G
Sbjct: 68 G 68
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 2 SCSFSSLPVAPRAGARDLRPQCPGSHR---EAGGEAAGQAGRIFPSRRRRRRGRYHGDRG 58
SCS +SLP +P A P S R G G+ S RRR G + G
Sbjct: 205 SCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLSRRREGALSSESG 264
Query: 59 GRPSFGGSRPPSALRAANRSPVR 81
S LR R+ R
Sbjct: 265 ASSSSYSGESLRELRWPPRASAR 287
>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 34 AAGQAGRIFPSRRRRRRGR-YHGDRGGRPS 62
A G R+ P+ RRRRRGR G GGR S
Sbjct: 25 AVGAGSRLCPAGRRRRRGRGCFGSSGGRKS 54
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,491,777
Number of Sequences: 37866
Number of extensions: 225212
Number of successful extensions: 1365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 255
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.