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Search of human proteins with 239741175
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo
sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo ... 725 0.0
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ... 355 4e-98
gi|239752810 PREDICTED: hypothetical protein [Homo sapiens] 208 5e-54
gi|119220564 one cut domain, family member 2 [Homo sapiens] 39 0.009
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 35 0.10
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 34 0.17
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.17
gi|7662486 ring finger protein 44 [Homo sapiens] 34 0.23
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.29
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.29
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.29
gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo ... 33 0.38
gi|4503489 ephrin-B3 precursor [Homo sapiens] 33 0.50
gi|114145479 neuroepithelial cell transforming gene 1 isoform 1 ... 32 0.66
gi|19923327 neuroepithelial cell transforming gene 1 isoform 2 [... 32 0.66
gi|13994190 frizzled 8 [Homo sapiens] 32 0.66
gi|238776833 THO complex 4 [Homo sapiens] 32 0.86
gi|239756880 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo ... 31 1.5
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 31 1.5
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 31 1.5
gi|125490356 zinc finger protein 517 [Homo sapiens] 31 1.5
gi|156415988 zinc finger and BTB domain containing 7B [Homo sapi... 31 1.9
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 31 1.9
gi|239752949 PREDICTED: similar to kruppel-related zinc finger p... 31 1.9
gi|239752947 PREDICTED: similar to kruppel-related zinc finger p... 31 1.9
gi|153792780 additional sex combs like 2 [Homo sapiens] 31 1.9
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 30 2.5
>gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo
sapiens]
Length = 352
Score = 725 bits (1872), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV
Sbjct: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
Query: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE
Sbjct: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
Query: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHSAAQPTSP 180
AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHSAAQPTSP
Sbjct: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHSAAQPTSP 180
Query: 181 TLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGR 240
TLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGR
Sbjct: 181 TLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGR 240
Query: 241 RKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHG 300
RKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHG
Sbjct: 241 RKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHG 300
Query: 301 AGCGASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 352
AGCGASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP
Sbjct: 301 AGCGASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 352
>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
Length = 438
Score = 355 bits (910), Expect = 4e-98
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 185 RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS 244
RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS
Sbjct: 271 RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS 330
Query: 245 PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG 304
PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG
Sbjct: 331 PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG 390
Query: 305 ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 352
ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP
Sbjct: 391 ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 438
Score = 352 bits (903), Expect = 3e-97
Identities = 181/212 (85%), Positives = 184/212 (86%), Gaps = 5/212 (2%)
Query: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV
Sbjct: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
Query: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE
Sbjct: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
Query: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHSAAQPTSP 180
AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEH T
Sbjct: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHLWLPTTLE 180
Query: 181 TLKGRTHTFRG--IPPGLPTWRRLLLSWFNSC 210
G + G I +P R SW + C
Sbjct: 181 NRSGPSPQLSGGAIKFVVPKQDR---SWLSQC 209
>gi|239752810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 208 bits (530), Expect = 5e-54
Identities = 114/164 (69%), Positives = 118/164 (71%), Gaps = 5/164 (3%)
Query: 194 PGLPTWRRLLLSWFN-SCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPP 252
PG T+RR ++ S PR + S G G GG P G P L
Sbjct: 44 PGESTYRRGAIAHERLSTPRPTQVQAKKSVGSGRAGASGLGGAKAPQEGCGGPPELTARR 103
Query: 253 GA----DEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLP 308
GA EEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLP
Sbjct: 104 GAALRGPGLEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLP 163
Query: 309 PREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 352
PREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP
Sbjct: 164 PREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 207
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 38.5 bits (88), Expect = 0.009
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 216 HAQTHSSTGQEVGGIGEGGGFGPGRR-------------KGSPGRLRGPPGADEAEEVEA 262
H +G GG G GGG GPG +G+ G LRGPP A + E
Sbjct: 33 HGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQ-EL 91
Query: 263 DEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGA---GCGASLPPREDVPQQQPH 319
AAA R + A++L D R + + LH A C +S P + +
Sbjct: 92 GTAAAAAAAASRSAMVTSMASILDGGDYRPELSIPLHHAMSMSCDSSPP---GMGMSNTY 148
Query: 320 TQAPGVQPGLPAS 332
T +QP P S
Sbjct: 149 TTLTPLQPLPPIS 161
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 35.0 bits (79), Expect = 0.10
Identities = 42/120 (35%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 221 SSTGQ-EVGGIGEGGGFGPGRRKGSPGRLRGPP--GADEAEEVEADEQHP-LAAAPPRVV 276
SS GQ + GG G GGG G G PG PP GA EA P AAA R+
Sbjct: 3 SSLGQPDGGGGGGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLA 62
Query: 277 VERRAAAVLALRDDRFVVLVVLHGA-------GCGASLPPREDVPQQ-QPHTQAPGVQPG 328
+++ +A L D GA G A P D P+ P T AP V PG
Sbjct: 63 LDQLSALGLGGAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPG 122
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 34.3 bits (77), Expect = 0.17
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 238 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 297
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 287 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 344
Query: 298 LHGAGCGASLPPREDVP 314
AG G+S R P
Sbjct: 345 ---AGAGSSFGGRPHRP 358
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.17
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 238 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 297
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 377 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 434
Query: 298 LHGAGCGASLPPREDVP 314
AG G+S R P
Sbjct: 435 ---AGAGSSFGGRPHRP 448
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.17
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 238 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 297
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 377 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 434
Query: 298 LHGAGCGASLPPREDVP 314
AG G+S R P
Sbjct: 435 ---AGAGSSFGGRPHRP 448
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.3 bits (77), Expect = 0.17
Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 231 GEGGGFGPGRRKG-SPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRD 289
G G G GPG G PG+ GP A A AAAP +V AA+L L
Sbjct: 171 GPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPK 230
Query: 290 DRFVVLVVLHGAGCGASLPPREDVPQ--QQPHTQAPGVQPGLP 330
V+ GA+ PP P P AP P P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP 273
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.23
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 233 GGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAA 283
G G PG+ GSPG L GP + A + Q P + P V ERRA+A
Sbjct: 25 GPGSTPGQLWGSPG-LEGPLASPPARDERLPSQQPPSRPPHLPVEERRASA 74
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.5 bits (75), Expect = 0.29
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 228 GGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 273
G IGE G GP G PG+ +GPPG D A+ P PP
Sbjct: 1226 GDIGEKGDSGPSGAAGPPGK-KGPPGEDGAKGSVGPTGLPGDLGPP 1270
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 174 AAQPTSPTLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEG 233
AA PTSP T G P + T + R + +T + T + VGGIG G
Sbjct: 530 AATPTSPATAVSPATAAG--PAMATTTE------EAKGRNPRAGRTLTYTAKPVGGIGGG 581
Query: 234 GGFGPGRRKGSPGRLRGPP 252
GG G +G P +L+ PP
Sbjct: 582 GGPPTGAGRG-PSQLQAPP 599
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.5 bits (75), Expect = 0.29
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 174 AAQPTSPTLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEG 233
AA PTSP T G P + T + R + +T + T + VGGIG G
Sbjct: 530 AATPTSPATAVSPATAAG--PAMATTTE------EAKGRNPRAGRTLTYTAKPVGGIGGG 581
Query: 234 GGFGPGRRKGSPGRLRGPP 252
GG G +G P +L+ PP
Sbjct: 582 GGPPTGAGRG-PSQLQAPP 599
>gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo
sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.38
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 239 GRRKGSPGRLRGPPGADE---------------AEEVEADEQHPLAAAPPRVVVERRAAA 283
GR + PG+ R +E +++ E D+Q P P R E
Sbjct: 69 GRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYT 128
Query: 284 VLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 334
L LR + + G G + E V +P +QA G +P L AS C
Sbjct: 129 SLQLRPPQGRI------PGPGTPVKYSEVVLDSEPKSQASGPEPELYASVC 173
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.50
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 228 GGIGEGGGFGPGRRKGSPGR----LRG-----PPGADEAEEVEADEQHPL 268
G +G GGG G G R+ PG LRG PP E+V D HP+
Sbjct: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPV 322
>gi|114145479 neuroepithelial cell transforming gene 1 isoform 1
[Homo sapiens]
Length = 596
Score = 32.3 bits (72), Expect = 0.66
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 238 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 297
P + GSP L+G P E E + HP A ++ +RRA+ V ++ V V
Sbjct: 502 PFQSAGSPPELQGLPELHE----ECEGNHPSAR---KLTAQRRASTVSSVTQ----VEVD 550
Query: 298 LHGAGCGASLPPREDVPQQQPHTQAPGVQ 326
+ CG+ + ED + H PG++
Sbjct: 551 ENAYRCGSGMQMAEDSKSLKTHQTQPGIR 579
>gi|19923327 neuroepithelial cell transforming gene 1 isoform 2
[Homo sapiens]
Length = 542
Score = 32.3 bits (72), Expect = 0.66
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 238 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 297
P + GSP L+G P E E + HP A ++ +RRA+ V ++ V V
Sbjct: 448 PFQSAGSPPELQGLPELHE----ECEGNHPSAR---KLTAQRRASTVSSVTQ----VEVD 496
Query: 298 LHGAGCGASLPPREDVPQQQPHTQAPGVQ 326
+ CG+ + ED + H PG++
Sbjct: 497 ENAYRCGSGMQMAEDSKSLKTHQTQPGIR 525
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 32.3 bits (72), Expect = 0.66
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 191 GIPPGLPTWR-RLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGP-GRRKGSPGRL 248
GI G+ W + L SW + C R A ++ G G GGG GP G G PG
Sbjct: 597 GITSGVWVWSGKTLESWRSLCTRCC-WASKGAAVGGGAGATAAGGGGGPGGGGGGGPGGG 655
Query: 249 RGPPG 253
GP G
Sbjct: 656 GGPGG 660
Score = 28.5 bits (62), Expect = 9.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 228 GGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQH 266
GG G GG G G GP G E EE+ A EQH
Sbjct: 348 GGAGGAGGAAAGAGAAGAGA-GGPGGRGEYEELGAVEQH 385
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 32.0 bits (71), Expect = 0.86
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 189 FRGIP-PGLPTWRRLLLSWFNSCPRTLKHAQTHSST-GQEVGGIGEGGGFGPGRRKGSPG 246
+ G+P G P +L+ S ++ R + T + GG G GGG G R G+ G
Sbjct: 173 YNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARG 232
Query: 247 RLRGPPGADEAEEVEADE 264
R RG G + +++ A+E
Sbjct: 233 RGRG-AGRNSKQQLSAEE 249
>gi|239756880 PREDICTED: hypothetical protein [Homo sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 270 AAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPRE-DVPQQQPHTQAP 323
A+PPR A+ VL LRD V GAGC S PPR D QQ Q+P
Sbjct: 238 ASPPREGAFAGASPVLRLRD---VGTERESGAGCLRSAPPRAGDARQQTQRCQSP 289
>gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo
sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 270 AAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPRE-DVPQQQPHTQAP 323
A+PPR A+ VL LRD V GAGC S PPR D QQ Q+P
Sbjct: 238 ASPPREGAFAGASPVLRLRD---VGTERESGAGCLRSAPPRAGDARQQTQRCQSP 289
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 22/105 (20%)
Query: 169 EKEHSAAQPTSPTLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVG 228
+K AA P+ P +G + + PPG P LL W +KH S G E+
Sbjct: 295 QKLEEAAPPSDP-FRGGSGSPGPEPPGRPDGPSLLYRW-------MKHEPGLGSYGDEL- 345
Query: 229 GIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 273
GR +GSP G D A PL APP
Sbjct: 346 ----------GRERGSPSERCEERGGDAAVSPGGP---PLGLAPP 377
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 22/105 (20%)
Query: 169 EKEHSAAQPTSPTLKGRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVG 228
+K AA P+ P +G + + PPG P LL W +KH S G E+
Sbjct: 276 QKLEEAAPPSDP-FRGGSGSPGPEPPGRPDGPSLLYRW-------MKHEPGLGSYGDEL- 326
Query: 229 GIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 273
GR +GSP G D A PL APP
Sbjct: 327 ----------GRERGSPSERCEERGGDAAVSPGGP---PLGLAPP 358
>gi|125490356 zinc finger protein 517 [Homo sapiens]
Length = 492
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 155 CGLRISQHDFLFDAEKEHSAAQPTSPTLKGRTHTFR-------GIPPGLPTWRRLLLSW- 206
CG S+ L +K H+ +P + T G+ R I G +R L
Sbjct: 266 CGKAFSRSSRLLQHQKFHTGEKPFACTECGKAFCRRFTLNEHGRIHSGERPYRCLRCGQR 325
Query: 207 FNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRR 241
F LKH + H+ G + GG+G+G G +R
Sbjct: 326 FIRGSSLLKHHRLHAQEGAQDGGVGQGALLGAAQR 360
>gi|156415988 zinc finger and BTB domain containing 7B [Homo
sapiens]
Length = 539
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 211 PRTLKHAQTHSSTGQEVGG-IGEGGGFGPGRRKGSPGRLRGPP-GADEAEEVEADEQHPL 268
P H T+ +EV G +G GG GPG P PP G E E +E+
Sbjct: 224 PTVPAHPLTYEE--EEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEE 281
Query: 269 AAAPP 273
PP
Sbjct: 282 LVYPP 286
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 211 PRTLKHAQTHSSTGQEVGG-IGEGGGFGPGRRKGSPGRLRGPP-GADEAEEVEADEQHPL 268
P H T+ +EV G +G GG GPG P PP G E E +E+
Sbjct: 258 PTVPAHPLTYEE--EEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEE 315
Query: 269 AAAPP 273
PP
Sbjct: 316 LVYPP 320
>gi|239752949 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 1 [Homo sapiens]
Length = 539
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 211 PRTLKHAQTHSSTGQEVGG-IGEGGGFGPGRRKGSPGRLRGPP-GADEAEEVEADEQHPL 268
P H T+ +EV G +G GG GPG P PP G E E +E+
Sbjct: 224 PTVPAHPLTYEE--EEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEE 281
Query: 269 AAAPP 273
PP
Sbjct: 282 LVYPP 286
>gi|239752947 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 2 [Homo sapiens]
Length = 539
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 211 PRTLKHAQTHSSTGQEVGG-IGEGGGFGPGRRKGSPGRLRGPP-GADEAEEVEADEQHPL 268
P H T+ +EV G +G GG GPG P PP G E E +E+
Sbjct: 224 PTVPAHPLTYEE--EEVAGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEE 281
Query: 269 AAAPP 273
PP
Sbjct: 282 LVYPP 286
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 217 AQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEE 259
A +S G + G G GGG GPG G PG+D E
Sbjct: 680 AAAAASVGGTIPGPGPGGGQGPGEGGEGQTARGGSPGSDRVSE 722
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 227 VGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 273
VG G G G R+GSPG GPPG D A V+ D A P
Sbjct: 1022 VGPPGLTGPAGEPGREGSPGA-DGPPGRDGAAGVKGDRGETGAVGAP 1067
Score = 28.9 bits (63), Expect = 7.3
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 226 EVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 273
E G GE G GP +G PG RG G A ++ P A PP
Sbjct: 310 ESGSPGENGSPGPMGPRGLPGE-RGRTGPAGAAGARGNDGQPGPAGPP 356
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,278,480
Number of Sequences: 37866
Number of extensions: 842239
Number of successful extensions: 4516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 4354
Number of HSP's gapped (non-prelim): 226
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.