Guide to the Human Genome
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Name: LOC100290530 Sequence: fasta or formatted (376aa) NCBI GI: 239751374
Description:

PREDICTED: hypothetical protein XP_002347830

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         37           2
 C cysteine            3.2         12           1
 D aspartate           3.2         12           2
 E glutamate           3.7         14           1
 F phenylalanine       1.3          5           1
 G glycine             9.6         36           3
 H histidine           1.6          6           1
 I isoleucine          1.3          5           1
 K lysine              2.4          9           1
 L leucine             9.6         36           2
 M methionine          1.6          6           1
 N asparagine          2.9         11           2
 P proline            10.6         40           2
 Q glutamine           2.9         11           2
 R arginine           11.2         42           3
 S serine             12.0         45           3
 T threonine           5.3         20           2
 V valine              4.3         16           1
 W tryptophan          2.9         11           2
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347830 
LOC100292979          1.000   PREDICTED: hypothetical protein 
LOC100292062          0.020   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.020   PREDICTED: hypothetical protein XP_002347697 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
ERMP1                 0.016   aminopeptidase Fxna 
LOC731275             0.016   PREDICTED: similar to Putative uncharacterized prot...
YTHDF2                0.016   high glucose-regulated protein 8 
LOC100292727          0.015   PREDICTED: hypothetical protein 
LOC100127987          0.015   PREDICTED: hypothetical protein LOC100127987 
BSN                   0.015   bassoon protein 
MAGI2                 0.015   membrane associated guanylate kinase, WW and PDZ dom...
LOC100127987          0.015   PREDICTED: hypothetical protein LOC100127987 
LOC100292845          0.015   PREDICTED: hypothetical protein 
LOC100127987          0.015   PREDICTED: hypothetical protein LOC100127987 
LOC100289230          0.015   PREDICTED: hypothetical protein XP_002342600 
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
MAML3                 0.015   mastermind-like 3 
C15orf52              0.013   hypothetical protein LOC388115 
LOC100132345          0.013   PREDICTED: hypothetical protein 
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 3 ...
TOX2                  0.013   TOX high mobility group box family member 2 isoform...
COL22A1               0.013   collagen, type XXII, alpha 1 
RAB11FIP3             0.012   rab11-family interacting protein 3 isoform 1 
LOC100294010          0.012   PREDICTED: hypothetical protein 
LOC100291514          0.012   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.012   PREDICTED: hypothetical protein XP_002343026 
TOX2                  0.012   TOX high mobility group box family member 2 isoform...
TOX2                  0.012   TOX high mobility group box family member 2 isoform...
TOX2                  0.012   TOX high mobility group box family member 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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