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Search of human proteins with 239741001
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo ... 342 7e-95
gi|239752657 PREDICTED: hypothetical protein [Homo sapiens] 340 4e-94
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ... 178 2e-45
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 35 0.040
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 35 0.040
gi|4507205 serum response factor (c-fos serum response element-b... 33 0.15
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 33 0.15
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 32 0.20
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 32 0.20
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 32 0.20
gi|24497589 aristaless related homeobox [Homo sapiens] 32 0.33
gi|134304838 eukaryotic translation initiation factor 2-alpha ki... 31 0.57
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 31 0.57
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 31 0.57
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 30 0.97
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ... 30 1.3
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 29 1.7
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 29 2.2
gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens] 29 2.2
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 29 2.2
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 29 2.2
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 29 2.2
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 28 2.8
gi|4585643 zinc finger protein 264 [Homo sapiens] 28 2.8
gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens] 28 2.8
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 28 2.8
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 28 4.8
gi|12758125 ribosomal RNA processing 8, methyltransferase, homol... 28 4.8
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 28 4.8
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 28 4.8
>gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
sapiens]
Length = 168
Score = 342 bits (878), Expect = 7e-95
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLPPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
MLPPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG
Sbjct: 1 MLPPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
Query: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA
Sbjct: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
Query: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 340 bits (871), Expect = 4e-94
Identities = 167/168 (99%), Positives = 167/168 (99%)
Query: 1 MLPPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
MLPPSPW RGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG
Sbjct: 1 MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
Query: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA
Sbjct: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
Query: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
sapiens]
Length = 152
Score = 178 bits (451), Expect = 2e-45
Identities = 90/104 (86%), Positives = 94/104 (90%)
Query: 65 WSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 124
W+ + +G +LLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP
Sbjct: 49 WAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 108
Query: 125 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 109 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.040
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 QTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRG 75
Q P +D + P V G PG G HR QQ + +QRG
Sbjct: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG 146
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.040
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 QTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRG 75
Q P +D + P V G PG G HR QQ + +QRG
Sbjct: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG 146
>gi|4507205 serum response factor (c-fos serum response
element-binding transcription factor) [Homo sapiens]
Length = 508
Score = 32.7 bits (73), Expect = 0.15
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 6 PWERGVEAASAYAQA---KFQESGTSRWKGVGDT-----GQTPPQDS---PGISEPEVAG 54
P + G AA A + T R G G T G+ P + PG E E A
Sbjct: 3 PTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREAAA 62
Query: 55 APGL-----AGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTW 109
A AGA + S+ D E + + + +L + +I VV + A+ T
Sbjct: 63 AAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAATG 122
Query: 110 AWGAAVAGAVARRAPGGRLR 129
+G V+GAV+ PG + R
Sbjct: 123 GYG-PVSGAVSGAKPGKKTR 141
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 32.7 bits (73), Expect = 0.15
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 12 EAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEE 71
+ +S +QA+ Q+SG G+T + P + +GAC S Q +E
Sbjct: 105 DGSSHGSQAERQDSGA------GETAKAARCQEPSAHLEARKKSKAGSGACQDRSGQAQE 158
Query: 72 QQRGQHVAQLLEEVGSALGDDDIDDVVAARQ----CGASFTWAWGAAV---AGAVARRAP 124
+Q EE + ++ ++ V AR+ GA W W AGAV +A
Sbjct: 159 RQESHEQEVNREERLRSWEQEEEEEEVRAREPGMARGAESEWTWHGETEGKAGAVGPKAA 218
Query: 125 GGRLRVGFGDRQVE 138
G + G R+ +
Sbjct: 219 GDNREMEQGVREAD 232
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 32.3 bits (72), Expect = 0.20
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 32.3 bits (72), Expect = 0.20
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 32.3 bits (72), Expect = 0.20
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 31.6 bits (70), Expect = 0.33
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 46 GISEPE----VAGAPGLAGACH--RWSQQDEEQ-----QRGQHVAQLLEEVGSALGDDDI 94
G++ PE VAG PG A A ++ DEE+ + +LLE+ L +DD
Sbjct: 197 GVTHPEERLGVAGGPGSAPAAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDA 256
Query: 95 DDVVAA-RQCGASFTWAWGAAVAGAVARRAPGGRL 128
++ R+C + T A AA A AVA GG L
Sbjct: 257 RALLKEPRRCPVAATGAVAAAAAAAVA--TEGGEL 289
>gi|134304838 eukaryotic translation initiation factor 2-alpha
kinase 3 [Homo sapiens]
Length = 1116
Score = 30.8 bits (68), Expect = 0.57
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 44 SPGISEPEVAG----APGLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVA 99
S +S+PEV G P L GA +W Q E + + L E GDD + +V
Sbjct: 139 SSSLSKPEVFGNKMIIPSLDGALFQWDQDRESMETVPFTVESLLESSYKFGDDVV--LVG 196
Query: 100 ARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGD--RQVEDAAFVQATVMVVQVAG 154
G S T +A +G V R D Q ED +Q T V+ G
Sbjct: 197 ----GKSLTTYGLSAYSGKVRYICSALGCRQWDSDEMEQEEDILLLQRTQKTVRAVG 249
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.8 bits (68), Expect = 0.57
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQ 76
G G+ PQ PG+ +P + G PG GA + E Q+G+
Sbjct: 144 GIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE 186
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.8 bits (68), Expect = 0.57
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQ 76
G G+ PQ PG+ +P + G PG GA + E Q+G+
Sbjct: 144 GIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE 186
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 24 ESGTSRWKGVGDTGQTPPQDSPGISEPEVAG---APGLAGACHRWSQQDEEQQRGQHVAQ 80
+ G GDTGQ P +DS +P + APG Q+D E+ G A
Sbjct: 627 KGGPPPGNAAGDTGQ-PAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAAS 685
Query: 81 LLEEVGSA 88
LEE G A
Sbjct: 686 QLEEAGRA 693
>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
sapiens]
Length = 101
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 44 SPGISEPEVAGAPGLAGACH-----RWSQQDEEQQRGQHVAQLLEEVGSALGDDD 93
+PG+ P +A AP L ACH RW+ + RG A L + + LG D
Sbjct: 30 APGVEWPRLAAAPAL--ACHRRPRWRWTGRHLAALRGLGPAGALRRLRTRLGHQD 82
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 19 QAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
QA Q SG + + +T +PP S E VA AP H+W+
Sbjct: 235 QALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQWA 282
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 33 VGDTGQTPPQD--SPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALG 90
+GD G P D +PG E GA A A SQ+DEE++ +L EE A
Sbjct: 1643 LGDAGDPGPPDAAAPGPRE----GAAAAAAAAGESSQEDEEEE-----LELPEE--EAED 1691
Query: 91 DDDIDD 96
D+D DD
Sbjct: 1692 DEDEDD 1697
>gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens]
Length = 860
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 23 QESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGL 58
Q+ G W G G + P SPG S + +PGL
Sbjct: 70 QDLGRQAWAGAGFEAENGPTPSPGRSPLDSQASPGL 105
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 33 VGDTGQTPPQDSPGISEPEVAGAPGLAGA 61
+G G PQ PG PE G PG AGA
Sbjct: 243 MGPIGPPGPQGPPGERGPEGIGKPGAAGA 271
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 28.9 bits (63), Expect = 2.2
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 35/130 (26%)
Query: 3 PPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTP-PQDSPGISE-----PEVAGAP 56
PPS ++S++AQ +F G G G TP P +P +++ G
Sbjct: 252 PPSSSASASSSSSSFAQQRFGAMGGGGPSAAG--GGTPQPTATPTLNQLLTSPSSARGYQ 309
Query: 57 GLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVA 116
G G + QD G+ G D+ A QC WGAA A
Sbjct: 310 GYPGGDYSGGPQDG---------------GAGKGPADM-----ASQC-------WGAAAA 342
Query: 117 GAVARRAPGG 126
A A A GG
Sbjct: 343 AAAAAAASGG 352
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 28.9 bits (63), Expect = 2.2
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 35/130 (26%)
Query: 3 PPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTP-PQDSPGISE-----PEVAGAP 56
PPS ++S++AQ +F G G G TP P +P +++ G
Sbjct: 252 PPSSSASASSSSSSFAQQRFGAMGGGGPSAAG--GGTPQPTATPTLNQLLTSPSSARGYQ 309
Query: 57 GLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVA 116
G G + QD G+ G D+ A QC WGAA A
Sbjct: 310 GYPGGDYSGGPQDG---------------GAGKGPADM-----ASQC-------WGAAAA 342
Query: 117 GAVARRAPGG 126
A A A GG
Sbjct: 343 AAAAAAASGG 352
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 26 GTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRG 75
GT R G G+TPPQ G G+ A W EQ RG
Sbjct: 82 GTPRPPGASKGGRTPPQQ---------GGRAGMGRASRSWEGSPGEQPRG 122
>gi|4585643 zinc finger protein 264 [Homo sapiens]
Length = 627
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 9 RGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQ 68
+G S QA+ Q+ + +G G P + SPG PE G G C R Q+
Sbjct: 115 QGNSVDSQLGQAEDQDGLSEMQEGHFRPGIDPQEKSPGKMSPECDGLGTADGVCSRIGQE 174
>gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 113 AAVAGAVARRAPGGRLRVGFGDR 135
A +AG ++R++PG ++ V GDR
Sbjct: 84 AVIAGVLSRKSPGDKILVNMGDR 106
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 41 PQDSP-GISEPEVAGAPGLAGACHRWSQQDEE--QQRGQHVAQLLEEVGSALG 90
PQ P + E G P LA C RW+ E+ ++RG + L+E G G
Sbjct: 862 PQGGPESVGEVFRLGRPRLAAHCARWTLGSEQCPRKRGLALVGLVEAAGEEAG 914
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 27.7 bits (60), Expect = 4.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 19 QAKFQESGTSRWKGV-GDTGQTPPQDSPGISEPEVAGAPGLAG 60
QA+ QE G KG G G+ Q PG+ E G PG G
Sbjct: 245 QAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRG 287
>gi|12758125 ribosomal RNA processing 8, methyltransferase, homolog
[Homo sapiens]
Length = 456
Score = 27.7 bits (60), Expect = 4.8
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 24 ESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQHVAQLLE 83
++G WKG T PP+ SPG + P+ P + +W + + ++R ++ Q +
Sbjct: 153 QTGPKAWKG--STTNDPPKQSPGSTSPK----PPHTLSRKQWRNRQKNKRRCKNKFQPPQ 206
Query: 84 EVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGRLR 129
A + + + A A+ +A+R G R R
Sbjct: 207 VPDQAPAEAPTEKTEVSPVPRTDSHEARAGALRARMAQRLDGARFR 252
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 27.7 bits (60), Expect = 4.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 24 ESGTSRWKGV-GDTGQTPPQDSPGISEPEVAGAPGLAG 60
E G ++G GD G+ P+ +PG++ P +G PG+ G
Sbjct: 269 ERGPEGFRGPKGDLGRPGPKGTPGVAGP--SGEPGMPG 304
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 27.7 bits (60), Expect = 4.8
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 8 ERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSP--GISEPEVAGAPGLAGACHRW 65
E+GVE+ + K + SR D TPP S G +E EV GA G
Sbjct: 471 EQGVESEPLFPILKQEPQSPSRSLEPEDAAPTPPGPSSEGGPAEAEVDGATPTEG----- 525
Query: 66 SQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAAR 101
+ + G+ A L+EE L +DD A R
Sbjct: 526 DGDGDGEGEGEGEAVLMEE---DLIQQSLDDYDAGR 558
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,053,034
Number of Sequences: 37866
Number of extensions: 330419
Number of successful extensions: 1186
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 65
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.