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Search of human proteins with 239740830
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo
sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo ... 302 5e-83
gi|239740780 PREDICTED: hypothetical protein [Homo sapiens] 251 2e-67
gi|239740677 PREDICTED: hypothetical protein [Homo sapiens] 251 2e-67
gi|239513944 PREDICTED: hypothetical protein [Homo sapiens] 251 2e-67
gi|239754271 PREDICTED: hypothetical protein [Homo sapiens] 249 4e-67
gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo ... 249 4e-67
gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo ... 249 4e-67
gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo ... 249 4e-67
gi|33946327 nucleoporin 214kDa [Homo sapiens] 33 0.079
gi|57222570 codanin 1 [Homo sapiens] 32 0.23
gi|38488767 microtubule associated serine/threonine kinase famil... 32 0.23
gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens] 31 0.39
gi|194272180 plexin B1 [Homo sapiens] 31 0.39
gi|40254442 plexin B1 [Homo sapiens] 31 0.39
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 31 0.39
gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens] 30 0.67
gi|4503493 early growth response 1 [Homo sapiens] 30 0.88
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 30 0.88
gi|15431318 keratin 38 [Homo sapiens] 29 1.1
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 29 1.5
gi|58331144 proline rich region 18 [Homo sapiens] 29 1.5
gi|8922273 mediator complex subunit 9 [Homo sapiens] 29 1.5
gi|239047795 pleckstrin homology domain containing, family A mem... 28 2.0
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 28 2.0
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 28 2.0
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 28 2.0
gi|33286436 gametogenetin [Homo sapiens] 28 2.0
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|169216229 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 28 2.6
>gi|239740830 PREDICTED: hypothetical protein XP_002344068 [Homo
sapiens]
Length = 142
Score = 302 bits (774), Expect = 5e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSQKTSPLNEPLFQELVKFPSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCF 60
MSQKTSPLNEPLFQELVKFPSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCF
Sbjct: 1 MSQKTSPLNEPLFQELVKFPSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCF 60
Query: 61 MAGTESPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRE 120
MAGTESPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRE
Sbjct: 61 MAGTESPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRE 120
Query: 121 SEQPLSQGNPHQGWGPDTRKGR 142
SEQPLSQGNPHQGWGPDTRKGR
Sbjct: 121 SEQPLSQGNPHQGWGPDTRKGR 142
>gi|239740780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 251 bits (640), Expect = 2e-67
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239740677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 251 bits (640), Expect = 2e-67
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239513944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 251 bits (640), Expect = 2e-67
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239754271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 249 bits (637), Expect = 4e-67
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239748805 PREDICTED: hypothetical protein XP_002346828 [Homo
sapiens]
Length = 125
Score = 249 bits (637), Expect = 4e-67
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239742844 PREDICTED: hypothetical protein XP_002342661 [Homo
sapiens]
Length = 125
Score = 249 bits (637), Expect = 4e-67
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|239740900 PREDICTED: hypothetical protein XP_002344096 [Homo
sapiens]
Length = 125
Score = 249 bits (637), Expect = 4e-67
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 26 VGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCV 85
V LFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGC+
Sbjct: 9 VCLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCL 68
Query: 86 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 142
LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR
Sbjct: 69 LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPHQGWGPDTRKGR 125
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 33.1 bits (74), Expect = 0.079
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 19 FPSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTE----SPLGNPWPL 74
FP + +V + L A++T T + S + PP F + ++ PL +P PL
Sbjct: 576 FPPSTSAVKVNLSEKFTAAATSTPV-----SSSQSAPPMSPFSSASKPAASGPLSHPTPL 630
Query: 75 SLPPPC--WTGCVLPAPRGQRKPG 96
S PP VLP+P G+ G
Sbjct: 631 SAPPSSVPLKSSVLPSPSGRSAQG 654
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.6 bits (70), Expect = 0.23
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 31 QLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLG-NPWPLSLPPPC 80
++NP S E L P ++ T PP C + S L +PW L LPP C
Sbjct: 196 RINPTPVSEERSLSKP--KTCFTSPPISCVPSSQPSALDTSPWGLGLPPGC 244
>gi|38488767 microtubule associated serine/threonine kinase family
member 4 isoform b [Homo sapiens]
Length = 250
Score = 31.6 bits (70), Expect = 0.23
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 1 MSQKTSPLNEPLFQELVKFPSTVKSVGLFLQLNPNASSTETQLLVPALE--------SRD 52
M +K S EP+ + S + L +P ASS E+ L SR+
Sbjct: 1 MGEKVSEAPEPVPRGCSGHGSRTPASALVAASSPGASSAESSSGSETLSEEGEPGGFSRE 60
Query: 53 TLPPTHCFMAGT-----------ESPLGNPWPLSLPPPCWTGCVLPAPRG 91
PP + GT S L L+LPPP G V PAPRG
Sbjct: 61 HQPPPPPPLGGTLGARAPAAWAPASVLLERGVLALPPPLPGGAVPPAPRG 110
>gi|10092647 cardiolipin synthase 1 isoform 1 [Homo sapiens]
Length = 301
Score = 30.8 bits (68), Expect = 0.39
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 72 WPLSLPPPCWTGCVLPAPRGQRKPGPLGLSIFISLGNKRHRSG 114
W L P PC GC+ A R + +P LGL + +G + H SG
Sbjct: 32 WALLPPVPCCLGCL--AERWRLRPAALGLRL-PGIGQRNHCSG 71
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.39
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 9 NEPLFQELVKFPST----VKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGT 64
N Q L + P++ + + QL+P T P L+SRD LPP
Sbjct: 31 NGTYLQHLARDPTSGTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQ 90
Query: 65 ESPLGNPWPLSLPPP 79
P NP L L P
Sbjct: 91 AQPTNNPNQLLLVSP 105
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.39
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 9 NEPLFQELVKFPST----VKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGT 64
N Q L + P++ + + QL+P T P L+SRD LPP
Sbjct: 31 NGTYLQHLARDPTSGTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQ 90
Query: 65 ESPLGNPWPLSLPPP 79
P NP L L P
Sbjct: 91 AQPTNNPNQLLLVSP 105
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 30.8 bits (68), Expect = 0.39
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 20 PSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPP 79
P K G+ +P+ ++ P + P F+ ++P+G P L LP
Sbjct: 1116 PPAAKEEGVLGPWSPSPWPSQAGRSPPPPSEQTPGNPLINFLPEEDTPIGAP-DLGLPSL 1174
Query: 80 CWT-----GCVLPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQGNPH 131
W G PA + P+G L N V ++ E+P +G PH
Sbjct: 1175 SWPRVSTDGLQTPATPESQNDFPVGKDSQSQLPPPWRDRTNEVFKDDEEPKGRGAPH 1231
>gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens]
Length = 485
Score = 30.0 bits (66), Expect = 0.67
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 15 ELVKFPSTVKSVGLFLQLNPN------ASSTETQLLVPALESRDTLPPTHCFMAGTESPL 68
E++ + + LF++L+ TE + +VPALE +TL A ES +
Sbjct: 363 EVITVEKSSPATSLFVELDEEEVKAATTEPTEVEEVVPALEPTETLLSEKEINAREESLV 422
Query: 69 GNPWPLS--LPPPCWTGCVLPAPRGQRKPGPL--GLSIFI 104
P S P P G +P G+ KP PL G SI +
Sbjct: 423 EELSPASEKKPVPPSEGKSRLSPAGEMKPMPLSEGKSILL 462
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 0.88
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 27 GLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTE-SPLGNPWPLSLPPPCWTGCV 85
GL NP ASS+ + S PP C + + SP+ + P + P P +
Sbjct: 160 GLVSMTNPPASSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAP-TFPTP--NTDI 216
Query: 86 LPAPRGQRKPGPLGLSI 102
P P+ Q PG G ++
Sbjct: 217 FPEPQSQAFPGSAGTAL 233
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 29.6 bits (65), Expect = 0.88
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 63 GTESPLGNPWPLSLPP--PCWTGCVLPAP 89
G P G PL PP P W GC P P
Sbjct: 604 GARMPFGGQVPLGAPPPFPTWPGCPQPPP 632
Score = 26.6 bits (57), Expect = 7.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 55 PPTHCFMAGT---ESPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLSI----FISLG 107
PP H + AGT SP +P SLP P +P + PG L I + LG
Sbjct: 631 PPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLG 690
Query: 108 NKRH 111
H
Sbjct: 691 LNNH 694
>gi|15431318 keratin 38 [Homo sapiens]
Length = 456
Score = 29.3 bits (64), Expect = 1.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 66 SPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLGL 100
+PLG P L LPP C T C P P PG +G+
Sbjct: 60 TPLGRP-SLCLPPTCHTAC--PLPGTCHIPGNIGI 91
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 55 PPTHCFMAGTESPLGNPWPLSLPPPCWTGCVLPAP------RGQRKPGPL 98
PP PLG P P P P G VLP P RG R P P+
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPV 277
Score = 26.2 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 63 GTESPLGNPWPLSLPPPCWTGCVLPAPRGQRKPGPLG 99
G P G P P PPP P P R PGPLG
Sbjct: 302 GYGPPPGPPPPQQGPPPP------PGPFPPRPPGPLG 332
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 1.5
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 34 PNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCVL-----PA 88
P+ S+ +LL P L +R P + ++P PPP G L
Sbjct: 165 PSPSAEPRRLLAPCLPARAAGPRRGGPASDPDAPPTAGQGRRAPPP---GAQLLHGGLQV 221
Query: 89 PRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQPLSQG 128
P+ +PG L + +SL N+RHR + E + + +G
Sbjct: 222 PQLSPRPGALRPMLKVSLLNERHRYDDVEYEEEPEAVDEG 261
>gi|8922273 mediator complex subunit 9 [Homo sapiens]
Length = 146
Score = 28.9 bits (63), Expect = 1.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 14/51 (27%)
Query: 49 ESRDTLPPTHCFMAGTESPLGN--PWPLSLPPPCWTGCVLPAPRGQRKPGP 97
++ D LPPT ++ PL + P P PPP +PAP+ Q+ P P
Sbjct: 11 QAEDVLPPT------SDQPLPDTKPLPPPQPPP------VPAPQPQQSPAP 49
>gi|239047795 pleckstrin homology domain containing, family A member
7 [Homo sapiens]
Length = 1121
Score = 28.5 bits (62), Expect = 2.0
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 71 PWPLSLPPPCWTGCV------LPAPRGQRKPGPLGLSIFISLGNKRHRSGNHVVRESEQP 124
P P +PPP PA R KP S+ ISLG+ R+ H V+ S
Sbjct: 568 PSPSDIPPPGPPRVFPPRRPHTPAERVTVKPPDQRRSVDISLGDSPRRARGHAVKNSSHV 627
Query: 125 LSQGNPHQGW 134
+ P G+
Sbjct: 628 DRRSMPSMGY 637
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 70 NPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLS 101
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 70 NPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLS 101
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 70 NPWPLSLPPPCWTGCVLPAPRGQRKPGPLGLS 101
NP LPPP LP PR + P PLGL+
Sbjct: 46 NPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLA 77
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 2.0
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 17 VKFPSTVKSVGLFLQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSL 76
V FP + GL + P AS + TLP T + P +S
Sbjct: 49 VWFPGSATPPGLMVPREPQASPS-------------TLPLTLERPSPVMPPPEEAAAVSA 95
Query: 77 PPPCWTGCVLPAPRGQRKP 95
PPP G +LP P +KP
Sbjct: 96 PPPAPAGTLLPGPSKWQKP 114
>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 31 QLNPNASSTETQ-LLVPALESRDTLP---PTHCFMAGTESPLGNPWPLSLPPPCWTGCVL 86
+LNP + Q L +P ++ +D L H + + WPL P P V
Sbjct: 18 KLNPFPGKEQHQPLCIPPIKVKDLLKFSISLHILGVSGAAADSSRWPLPRPVPGSPAAVA 77
Query: 87 PAPRGQRKPG 96
PAP G +PG
Sbjct: 78 PAP-GAARPG 86
>gi|169216229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 74 LSLPPPCWTGCVLPAPRGQRKPGPLG 99
L+LPP CW G L G PLG
Sbjct: 116 LALPPSCWLGAALRGCSGSLLSPPLG 141
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 28.1 bits (61), Expect = 2.6
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 30 LQLNPNASSTETQLLVPALESRDTLPPTHCFMAGTESPLGNPWPLSLPPPCWTGCVLPAP 89
L L P + S L L S PP+ + T P+ P L PP L +P
Sbjct: 341 LPLAPPSPSAPPSL--QTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSP 398
Query: 90 RGQRKPGPLGLS 101
Q P PL LS
Sbjct: 399 SLQAPPSPLALS 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,217,438
Number of Sequences: 37866
Number of extensions: 436204
Number of successful extensions: 1009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 105
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.