Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287329 Sequence: fasta or formatted (125aa) NCBI GI: 239742844
Description:

PREDICTED: hypothetical protein XP_002342661

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          5           1
 C cysteine            3.2          4           1
 D aspartate           1.6          2           1
 E glutamate           4.0          5           1
 F phenylalanine       3.2          4           1
 G glycine             9.6         12           1
 H histidine           3.2          4           1
 I isoleucine          1.6          2           1
 K lysine              2.4          3           1
 L leucine            15.2         19           3
 M methionine          2.4          3           2
 N asparagine          4.8          6           1
 P proline            13.6         17           3
 Q glutamine           4.8          6           1
 R arginine            6.4          8           1
 S serine              8.0         10           2
 T threonine           5.6          7           1
 V valine              4.0          5           2
 W tryptophan          2.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342661 
LOC100293661          1.000   PREDICTED: hypothetical protein 
LOC100289810          1.000   PREDICTED: hypothetical protein XP_002346828 
LOC100294294          1.000   PREDICTED: hypothetical protein XP_002344096 
LOC100294242          0.996   PREDICTED: hypothetical protein 
LOC100294140          0.996   PREDICTED: hypothetical protein 
LOC100294129          0.996   PREDICTED: hypothetical protein 
LOC100294254          0.918   PREDICTED: hypothetical protein XP_002344068 
CRLS1                 0.029   cardiolipin synthase 1 isoform 1 
CDAN1                 0.029   codanin 1 
KRT38                 0.016   keratin 38 
PLXNB1                0.016   plexin B1 
PLXNB1                0.016   plexin B1 
TICAM1                0.016   toll-like receptor adaptor molecule 1 
ADAMTS7               0.016   ADAM metallopeptidase with thrombospondin type 1 mot...
PLEKHA7               0.016   pleckstrin homology domain containing, family A mem...
EGR1                  0.016   early growth response 1 
LOC646509             0.016   PREDICTED: hypothetical protein 
RCOR3                 0.016   REST corepressor 3 isoform a 
RCOR3                 0.016   REST corepressor 3 isoform d 
PRR18                 0.016   proline rich region 18 
MED9                  0.016   mediator complex subunit 9 
GGN                   0.016   gametogenetin 
BCL2L13               0.012   BCL2-like 13 (apoptosis facilitator) 
NUP214                0.012   nucleoporin 214kDa 
LOC100291797          0.012   PREDICTED: hypothetical protein XP_002345651 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
LOC100291443          0.012   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.012   PREDICTED: hypothetical protein XP_002342316 
SNRPB                 0.012   small nuclear ribonucleoprotein polypeptide B/B' iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press