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Search of human proteins with 239740737
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740737 PREDICTED: hypothetical protein [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740737 PREDICTED: hypothetical protein [Homo sapiens] 330 3e-91
gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo ... 309 6e-85
gi|239740652 PREDICTED: hypothetical protein [Homo sapiens] 306 5e-84
gi|30425464 transmembrane protein 105 [Homo sapiens] 35 0.029
gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo ... 33 0.086
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 33 0.086
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.11
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens] 32 0.15
gi|5453810 netrin 3 [Homo sapiens] 32 0.15
gi|134031945 SCO-spondin [Homo sapiens] 30 0.55
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ... 29 1.2
gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens] 29 1.2
gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens] 29 1.2
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens] 29 1.2
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 29 1.2
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 29 1.6
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ... 29 1.6
gi|226423905 splA/ryanodine receptor domain and SOCS box contain... 28 2.1
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239747141 PREDICTED: hypothetical protein XP_002343923 [Homo ... 28 2.1
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|190014599 zinc finger protein 717 [Homo sapiens] 28 2.1
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 28 2.1
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|47132585 cAMP-dependent protein kinase, regulatory subunit be... 28 2.8
>gi|239740737 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 330 bits (846), Expect = 3e-91
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MTQNLIMVFPHLDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEA 60
MTQNLIMVFPHLDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEA
Sbjct: 1 MTQNLIMVFPHLDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEA 60
Query: 61 WSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRG 120
WSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRG
Sbjct: 61 WSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRG 120
Query: 121 PGATEGPAFGRDPGKRRPWGCGFWRGS 147
PGATEGPAFGRDPGKRRPWGCGFWRGS
Sbjct: 121 PGATEGPAFGRDPGKRRPWGCGFWRGS 147
>gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo
sapiens]
Length = 222
Score = 309 bits (791), Expect = 6e-85
Identities = 137/144 (95%), Positives = 141/144 (97%), Gaps = 1/144 (0%)
Query: 4 NLIMVFPHLDSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH 63
N++++ P DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH
Sbjct: 80 NVVLLLPR-DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSH 138
Query: 64 KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA 123
KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA
Sbjct: 139 KPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGA 198
Query: 124 TEGPAFGRDPGKRRPWGCGFWRGS 147
TEGPAFGRDPGKRRPWGCGFWRGS
Sbjct: 199 TEGPAFGRDPGKRRPWGCGFWRGS 222
>gi|239740652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 306 bits (783), Expect = 5e-84
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 13 DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWTESP 72
DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWTESP
Sbjct: 62 DSFLFADTWVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWTESP 121
Query: 73 RGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRD 132
RGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRD
Sbjct: 122 RGEEKKAEPADLEAGFCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRD 181
Query: 133 PGKRRPWGCGFWRGS 147
PGKRRPWGCGFWRGS
Sbjct: 182 PGKRRPWGCGFWRGS 196
>gi|30425464 transmembrane protein 105 [Homo sapiens]
Length = 129
Score = 34.7 bits (78), Expect = 0.029
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 94 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 140
GA+R G V+G LL W +T +R P +GP + R PWG
Sbjct: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66
>gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo
sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.086
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 91 SWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEG--PAFGRDPGK--RRPWGCGFW 144
SWG GGGV G L+ WG VRG G+T G GR G+ RR W W
Sbjct: 597 SWGSVGAGGGV-GGPTGLVPWG-----VRGAGSTGGTFSGLGRAAGELSRRHWAMKSW 648
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 33.1 bits (74), Expect = 0.086
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 25 GQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADL 84
G + ++ E G A + CP A S +P W E P E+ EPA +
Sbjct: 70 GPRVVERQWEAGSAGAASPEELASPEERACPEEPAAPSPEPRVWLEDPASPEEPGEPAPV 129
Query: 85 EAGFCQSWG 93
GF +G
Sbjct: 130 PPGFGAVYG 138
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.7 bits (73), Expect = 0.11
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 41 PGLGPFAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYRGGG 100
P G R G+ P+ +A P+ + RG++ K DL++G G+ GG
Sbjct: 919 PARGRPKTRSLGLAPTEADA----PSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGR 974
Query: 101 VLGTKPRLL-GWG-RYTLRVRGPGATEGPAFGRDPGKRRP 138
G +PR G G R R R P T+ P DP R P
Sbjct: 975 ASGLRPRRNDGLGERPPPRPRRP-RTQAPGSRADPAPRVP 1013
>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
Length = 362
Score = 32.3 bits (72), Expect = 0.15
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 94 GAYRGG-----GVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 133
GAY GG G+LG++ GW R LR R P A GPA P
Sbjct: 114 GAYAGGPGLVAGLLGSEDHS-GWVRPALRARAPDAFVGPALAPAP 157
>gi|5453810 netrin 3 [Homo sapiens]
Length = 580
Score = 32.3 bits (72), Expect = 0.15
Identities = 17/29 (58%), Positives = 17/29 (58%)
Query: 106 PRLLGWGRYTLRVRGPGATEGPAFGRDPG 134
PRLL RY L GPGA G A GR PG
Sbjct: 517 PRLLPGRRYLLLGGGPGAAAGGAGGRGPG 545
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.4 bits (67), Expect = 0.55
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 45 PFAGRKG-------GVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSWGGAYR 97
P++GR G G+CP + + +P W + R C WGGA+
Sbjct: 58 PWSGRSGLTRSPAPGLCP-IYKPPETRPAKWNRTVRT-------------CCPGWGGAHC 103
Query: 98 GGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCGFWRGS 147
+ P + + +++ G+ A + RPWG +W GS
Sbjct: 104 TEALAKASPEGHCFAMWQCQLQA-GSANASAGSLEECCARPWGQSWWDGS 152
>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 23/76 (30%)
Query: 81 PADLEAG-FCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRR-- 137
P L+AG +C W G R WGR L + GPG G G P R
Sbjct: 121 PVHLKAGKWCVCWPGVVR-------------WGRGCLELAGPGPPCGRLRGLGPSPPRAA 167
Query: 138 ------PWGCGFWRGS 147
GCG W GS
Sbjct: 168 RPSVPAAAGCG-WAGS 182
>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
sapiens]
Length = 235
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 23/76 (30%)
Query: 81 PADLEAG-FCQSWGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRR-- 137
P L+AG +C W G R WGR L + GPG G G P R
Sbjct: 121 PVHLKAGKWCVCWPGVVR-------------WGRGCLELAGPGPPCGRLRGLGPSPPRAA 167
Query: 138 ------PWGCGFWRGS 147
GCG W GS
Sbjct: 168 RPSVPAAAGCG-WAGS 182
>gi|21536413 bridging integrator 1 isoform 7 [Homo sapiens]
Length = 475
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 51 GGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSW 92
GG P G P+ TESP G EP+ E F SW
Sbjct: 289 GGATP--GATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSW 328
>gi|21536404 bridging integrator 1 isoform 3 [Homo sapiens]
Length = 506
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 51 GGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEAGFCQSW 92
GG P G P+ TESP G EP+ E F SW
Sbjct: 320 GGATP--GATLPKSPSQPTESPAGSLPSGEPSAAEGTFAVSW 359
>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
Length = 307
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 108 LLGWGRYTLRVRGPGATEGPAFGRDPGK--RRPW 139
L GW LR GPG+ PA G P + RR W
Sbjct: 48 LRGWAARALRCFGPGSRGSPASGPGPRRVQRRAW 81
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 21 WVEEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPS 56
W E+G K TC+K C + P R GG CPS
Sbjct: 408 WCEDG-KVTCEKVRCEAACSH---PIPSRDGGCCPS 439
>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 89 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 142
C+ GG + G + G+ PR L R R+RG G G PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186
>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 89 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 142
C+ GG + G + G+ PR L R R+RG G G PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 28.9 bits (63), Expect = 1.6
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 68 WTES--PRGEEKKAEPADLEAGF-------CQSWGGAYRGGGVLGTKP--RLLGWGRYTL 116
W ES PRG + AE + G G + G G+ P R W +L
Sbjct: 337 WVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLRRERAWPPPSL 396
Query: 117 RVRGPGATEGPAFGRDPGKRR 137
R PG TEG G +RR
Sbjct: 397 RTPTPGLTEGGGTGLPSKQRR 417
>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 89 CQSWGGAYRGGGVLGTK-PRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGCG 142
C+ GG + G + G+ PR L R R+RG G G PG R P G G
Sbjct: 134 CRGGGGGFSGRRLGGSPWPRWLASSRR--RIRGTGVPAGFCHLDGPGSRVPAGAG 186
>gi|226423905 splA/ryanodine receptor domain and SOCS box containing
2 isoform 2 [Homo sapiens]
Length = 267
Score = 28.5 bits (62), Expect = 2.1
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 93 GGAYRGGGVLGTKPRLLG------WGRYTLRVRGPGATEGPAFGR 131
GG Y G G K R L WG+ +R+R G G A+GR
Sbjct: 183 GGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGERRGEAWGR 227
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 28.5 bits (62), Expect = 2.1
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 38 LTTPGLGPFAG--RKGGVCPSVGEAWSHKPNHWTESPRGEEKK---AEPADLEAGFCQSW 92
+T P AG R G+ S G AW+ PRG E + PA S
Sbjct: 9 VTVPRAAGSAGQRRAPGLPRSSGPAWAESRAR-PPRPRGLEPRHPPGSPALRPTDRTCSS 67
Query: 93 GGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 133
A GGGV G +P + G++ RG G RDP
Sbjct: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP 108
>gi|239747141 PREDICTED: hypothetical protein XP_002343923 [Homo
sapiens]
Length = 904
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 11 HLDSFLFADTWVEEGQK---CT-CKKQ-ECGGLTTPGLGPFAGRKGGVCPSVGEAWSHK 64
H SFL W G+K C C K C T AG K C G+ +SHK
Sbjct: 482 HRKSFLTIHQWTHTGEKPYECNECGKTFRCKSFLTVHQRTHAGEKPYACNECGKTYSHK 540
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 28.5 bits (62), Expect = 2.1
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 38 LTTPGLGPFAG--RKGGVCPSVGEAWSHKPNHWTESPRGEEKK---AEPADLEAGFCQSW 92
+T P AG R G+ S G AW+ PRG E + PA S
Sbjct: 9 VTVPRAAGSAGQRRAPGLPRSSGPAWAESRAR-PPRPRGLEPRHPPGSPALRPTDRTCSS 67
Query: 93 GGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDP 133
A GGGV G +P + G++ RG G RDP
Sbjct: 68 SSAGVGGGVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDP 108
>gi|190014599 zinc finger protein 717 [Homo sapiens]
Length = 914
Score = 28.5 bits (62), Expect = 2.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 11 HLDSFLFADTWVEEGQK---CT-CKKQ-ECGGLTTPGLGPFAGRKGGVCPSVGEAWSHK 64
H SFL W G+K C C K C T AG K C G+ +SHK
Sbjct: 489 HRKSFLTIHQWTHTGEKPYECNECGKTFRCKSFLTVHQRTHAGEKPYACNECGKTYSHK 547
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 23 EEGQKCTCKKQECGGLTTPGLGPFAGRKGGVCPSVGEAWSHK 64
EEG+ + QE G T GP CPS+GEA++ +
Sbjct: 682 EEGEASVSENQELDGSTGADAGP--------CPSLGEAYARE 715
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 92 WGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGC 141
WG GG + GT +LGWGR R PG++ A RR C
Sbjct: 106 WGS---GGALCGTAAGMLGWGRERGR---PGSSSAVALESQMTLRRKKRC 149
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 92 WGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGC 141
WG GG + GT +LGWGR R PG++ A RR C
Sbjct: 106 WGS---GGALCGTAAGMLGWGRERGR---PGSSSAVALESQMTLRRKKRC 149
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 92 WGGAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFGRDPGKRRPWGC 141
WG GG + GT +LGWGR R PG++ A RR C
Sbjct: 106 WGS---GGALCGTAAGMLGWGRERGR---PGSSSAVALESQMTLRRKKRC 149
>gi|47132585 cAMP-dependent protein kinase, regulatory subunit beta
2 [Homo sapiens]
Length = 418
Score = 28.1 bits (61), Expect = 2.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 44 GPFAGRKGGVCPSVGEAWSHKPNHWTESPRGEEKKAEPADLEA 86
G GG PS G ++ +P ++S GEE++A PAD A
Sbjct: 59 GDLGAAAGGGTPSKGVNFAEEPMQ-SDSEDGEEEEAAPADAGA 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.141 0.498
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,978,357
Number of Sequences: 37866
Number of extensions: 444027
Number of successful extensions: 1199
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 51
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.