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Search of human proteins with 239735603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239735603 POM121 membrane glycoprotein-like 12 [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens] 631 0.0
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 148 5e-36
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens] 67 2e-11
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 62 6e-10
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 60 2e-09
gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo ... 47 2e-05
gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens] 41 0.001
gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens] 41 0.001
gi|239742514 PREDICTED: similar to Putative POM121-like protein ... 37 0.027
gi|13128980 proline rich 14 [Homo sapiens] 37 0.027
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 35 0.061
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.061
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 35 0.079
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 35 0.079
gi|117938768 GNAS complex locus alex [Homo sapiens] 35 0.10
gi|238859557 regulatory factor X1 [Homo sapiens] 34 0.13
gi|83367077 mucin 16 [Homo sapiens] 33 0.23
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 33 0.30
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.30
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.30
gi|156071472 CD2 molecule [Homo sapiens] 33 0.39
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 33 0.39
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.39
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 32 0.51
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 32 0.51
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 32 0.51
>gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]
Length = 296
Score = 631 bits (1628), Expect = 0.0
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ 60
MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ
Sbjct: 1 MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ 60
Query: 61 SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM 120
SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM
Sbjct: 61 SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM 120
Query: 121 KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG 180
KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG
Sbjct: 121 KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG 180
Query: 181 ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL 240
ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL
Sbjct: 181 ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL 240
Query: 241 GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS 296
GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS
Sbjct: 241 GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS 296
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 148 bits (374), Expect = 5e-36
Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 12/216 (5%)
Query: 36 SPSTPQTTPS-----PQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQ 90
SPS+P + P R+ P PL + + +Q+ P P + RP DPA P
Sbjct: 11 SPSSPAQVRTDLPERPTKRRPPQPLHQVHR--VQFVHRAHPAPRYRPVRRRPNLDPANPT 68
Query: 91 R-VVSEGWRR-PALPGETA-LGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQ 147
+ +E WRR P + + LG S WE +K + +P WSPVTI I PP+++
Sbjct: 69 TWLANEAWRRFPMKKSQNSPLGPLPSDWWESYLKRTIWSLRHPRPIWSPVTIRITPPDQR 128
Query: 148 ESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKGGR 207
P SP AG P ++EL DPC++ET+L AL +C KG R + PL+ E DSK R
Sbjct: 129 VPPSTSPEDVIALAGLPPSEELADPCSKETVLRALRECRKGKGRLEEPLFPESLDSK--R 186
Query: 208 RNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPW 243
R+ + RPSAFKPL KNG + SFVPRPGPLK SL W
Sbjct: 187 RSPETRPSAFKPLMKNGTLTSFVPRPGPLKRSLHSW 222
>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
Length = 526
Score = 66.6 bits (161), Expect = 2e-11
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 106 TALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPA 165
+ LG + W G K + N SPVT+ IAPP+R+ S P Q
Sbjct: 103 SCLGVLPTVCWNGYHKKAVLSPRNSRMVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSP 162
Query: 166 AQELLDPCTRETLLGALSQCPKG-SARFDGPLWFEVSDSKGGRRNLQPRP-SAFKPLSKN 223
+ DPC +ET+L AL + K + + ++ + ++K R + SAF+PL N
Sbjct: 163 SSNAPDPCAKETVLSALKEKEKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVAN 222
Query: 224 GAVASFVPRPGPLKPSLGPWS 244
G ASFVP+PG LK L S
Sbjct: 223 GVPASFVPKPGSLKRGLNSQS 243
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 62.0 bits (149), Expect = 6e-10
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKG-SARFD 193
SPVT+ IAPP+R+ S P Q + DPC +ET+L AL + K + +
Sbjct: 4 SPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTVEEE 63
Query: 194 GPLWFEVSDSKGGRRNLQPRP-SAFKPLSKNGAVASFVPRPGPLKPSLGPWS 244
++ + ++K R + SAF+PL NG ASFVP+PG LK L S
Sbjct: 64 DQIFLDGQENKRRRHDSSGSGHSAFEPLVANGVPASFVPKPGSLKRGLNSQS 115
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 60.1 bits (144), Expect = 2e-09
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKG-SARFD 193
SPVT+ IAPP+R+ S P Q + DPC +ET+L AL + K + +
Sbjct: 4 SPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63
Query: 194 GPLWFEVSDSKGGRRNLQPRP-SAFKPLSKNGAVASFVPRPGPLKPSLGPWS 244
++ + ++K R + SAF+PL +G ASFVP+PG LK L S
Sbjct: 64 DQIFLDGQENKRRRHDSSGSGHSAFEPLVASGVPASFVPKPGSLKRGLNSQS 115
>gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo
sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 148 ESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKGGR 207
+S W PG + P G + D C + +L AL + G D V ++ G +
Sbjct: 2 DSLW-GPGAGSHPFGVHNTRLSPDLCPGKIVLRALKESGAGMPEQDKDP--RVQENPGDQ 58
Query: 208 RNLQP----RPSAFKPLSKNGAVASFVPRPGPLKPSL 240
R + PSAF+PL NG ++ FVPRPGPL+ L
Sbjct: 59 RRVPEVTGDAPSAFRPLRDNGGLSPFVPRPGPLQTDL 95
>gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
Length = 115
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193
SPVT+ IAPP+R+ S P Q + DPC +ET+L AL + K + +
Sbjct: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63
Query: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235
++ + ++K L SAFK VPRPGP
Sbjct: 64 DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96
>gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]
Length = 187
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193
SPVT+ IAPP+R+ S P Q + DPC +ET+L AL + K + +
Sbjct: 4 SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63
Query: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235
++ + ++K L SAFK VPRPGP
Sbjct: 64 DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96
>gi|239742514 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 896
Score = 36.6 bits (83), Expect = 0.027
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 215 SAFKPLSKNGAVASFVPRPGPLKPSL 240
SAF PL NG ++ FVPRPGPL+ L
Sbjct: 29 SAFWPLRDNGGLSPFVPRPGPLQTDL 54
>gi|13128980 proline rich 14 [Homo sapiens]
Length = 585
Score = 36.6 bits (83), Expect = 0.027
Identities = 70/267 (26%), Positives = 96/267 (35%), Gaps = 72/267 (26%)
Query: 23 LQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPL-------RSLTQSHIQYFQWGR----- 70
L+ P P PSTP + + R SPW L RS +S F
Sbjct: 214 LESPPTAPDPALELPSTPPPSSLLRPRLSPWGLAPLFRSVRSKLESFADIFLTPNKTPQP 273
Query: 71 PVPSTHL-IEVRPTQDPAKPQRVVSEG------------WRR-----PALPGETALGRDL 112
P PS + +E++ A+ Q +EG WR PAL + +LGR
Sbjct: 274 PPPSPPMKLELKIAISEAE-QSGAAEGTASVSPRPPIRQWRTQDHNTPALLPKPSLGRSY 332
Query: 113 SCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE------RQESPWRSPGQRARPAGRPAA 166
SC G G C TW P APP+ R+ + RA P RP
Sbjct: 333 SCPDLGPPGPGTC-------TWPP-----APPQPSRPRPRRHTVGGGEMARAPPPPRPCL 380
Query: 167 QELLDPCTRETLLGALSQCPK--------GSARFDGPLWFEVSDSKGGRRNLQPRPSAFK 218
++ + P LG + P S F P + +KG +PR S +
Sbjct: 381 RKEVFP------LGGVGASPSLTTSCSSTASTSFSEPAEPRLGSTKG----KEPRASKDQ 430
Query: 219 PLSK-----NGAVASFVPRPGPLKPSL 240
LS+ G V+ F R P +P L
Sbjct: 431 VLSEPETKTMGKVSRFRIRRTPARPQL 457
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 35.4 bits (80), Expect = 0.061
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 215 SAFKPLSKNGAVASFVPRPGPLKPSL 240
SAF PL NG + FVPRPGPL+ L
Sbjct: 29 SAFWPLRDNGGPSPFVPRPGPLQTDL 54
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.061
Identities = 71/280 (25%), Positives = 100/280 (35%), Gaps = 79/280 (28%)
Query: 18 AGEPLLQ-----GPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPV 72
AG PL+ GP L S S PQ PSP G S G
Sbjct: 1056 AGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLS-----------------GTSR 1098
Query: 73 PSTHLIEVRPTQDPAKPQRVVSEGWRRPA-LPGETALGRDLSCAWEGCMKGGLCRAWNPG 131
P T + ++PT P P R+ PA PG ++L + L+ PG
Sbjct: 1099 PPTPTLSLKPT--PPAPVRL------SPAPPPGSSSLLKPLTVP--------------PG 1136
Query: 132 RTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQEL-LDPCTRETL----------LG 180
T+ P A + + A PA PA Q L L P + L L
Sbjct: 1137 YTFPP-----AAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLA 1191
Query: 181 ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAF---KPLSKN-------GAVASFV 230
+L+Q P +A PL F++ +K Q R A +PL +N G +
Sbjct: 1192 SLAQRPVANAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLI 1251
Query: 231 PRPG------PLKPSLGPWSLSFCDDAWPSVLVQPAPSAI 264
+P + P+ GP +S + PS PAP+ +
Sbjct: 1252 SQPAHVALIQAVAPTPGPTPVSVLPSSTPS--TTPAPTGL 1289
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 35.0 bits (79), Expect = 0.079
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 24 QGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPT 83
+GP +P S +PQ G W L + +QS + +P + L +
Sbjct: 454 RGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDA-SQSSLLETDGEQP---SSLKKKEAG 509
Query: 84 QDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAP 143
+ P + V SEG RPA G+ L+ A ++ + +W PG SP+ +P
Sbjct: 510 EAPKPGEEVKSEGTARPAETGDVQPDIHLTSAEHENLRTPMNSSWLPG---SPMPQAQSP 566
Query: 144 PERQESP 150
E Q P
Sbjct: 567 EEGQRPP 573
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 35.0 bits (79), Expect = 0.079
Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 28/218 (12%)
Query: 23 LQGPDALA-APMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVR 81
L GP A AP+SR S P S +P P R L + + R PS I V
Sbjct: 17 LPGPGRGAPAPLSRDASPPGRAHSVP---TPRPFRGLFRRN------ARRRPSAASIFVA 67
Query: 82 PTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGI 141
P + P+ + PA+ A+ K + A NP R P ++ I
Sbjct: 68 PKRPCPLPRAAAAPLGVLPAVGWGLAI-----------RKTPMLPARNPPRFGHPSSVRI 116
Query: 142 APPERQES-PWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFE- 199
PP R + SP + A A +P LL+ ET + A + P+ + + P+ E
Sbjct: 117 PPPSRMFTLLLPSPREPAVKARKPIPATLLE----ETEVWA-QEGPRRVKKDEDPVQIEG 171
Query: 200 VSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLK 237
D K + S + G VASF PGPL+
Sbjct: 172 EDDEKRTPLSSGEASSTSRSQGTQGDVASFRCSPGPLE 209
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 34.7 bits (78), Expect = 0.10
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 3 AAAPAESADLGNFWKAGEPLLQGPDA---LAAPMSRSPSTPQTTPSPQGRQSPWPLRSLT 59
AA P +DL +A P + PD LAAP S + P T +PQ R + P RS
Sbjct: 220 AAHPKRLSDLLLTSRAAAPGWRSPDPRSRLAAPPLGSTTLPSTWTAPQSRLTARPSRS-- 277
Query: 60 QSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALP 103
P P E R Q K QR W+ P +P
Sbjct: 278 -----------PEPQIRESEQRDPQLRRKQQR-----WKEPLMP 305
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 34.3 bits (77), Expect = 0.13
Identities = 34/100 (34%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 20 EPLLQGPDALAAPMSRSPSTPQTTPSPQ---GRQSPWPLRSLTQSHIQYFQWGRPVPSTH 76
+P P AAP P T TP PQ QSP P QY VP+
Sbjct: 26 QPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPS 85
Query: 77 LIEVRPTQDPAKPQRV---VSEGWRR------PALPGETA 107
PT PA Q + VSEG R A PG TA
Sbjct: 86 QPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEASPGSTA 125
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.5 bits (75), Expect = 0.23
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 22 LLQGPDALAAPMSRSPSTPQT---TPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLI 78
+ GPD +APM+ SP TP T T + QS PL +++ + P ++ +
Sbjct: 1951 ITSGPDINSAPMTHSPITPPTIVWTSTGTIEQSTQPLHAVSSEKVSVQTQSTPYVNSVAV 2010
Query: 79 EVRPTQD 85
PT +
Sbjct: 2011 SASPTHE 2017
>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 18 AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
+G P L G A A +++ PS PQ + P GR+ PWPL S SH+
Sbjct: 55 SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113
Query: 69 GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
P P S L+E + T A P R + RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.30
Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 31/167 (18%)
Query: 140 GIAPPERQESPWRSPGQRARPAGRPAAQEL---------LDPCTRETLLGALSQCPKGSA 190
G P ++ PW + ++ A R AA + P E + + G
Sbjct: 97 GAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGG 156
Query: 191 RFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPWSLSFCDD 250
R DG + D R L R P + +A P P +P L
Sbjct: 157 R-DGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPEL--------HG 207
Query: 251 AWPSVLVQPAP--------SAIWDF-----WEATTPSCGSCSRVSFA 284
WP PAP +++W + W AT P+CG +R A
Sbjct: 208 RWPGPAGTPAPPGASRELRTSLWRWVNLGVWSATAPACGRGTRAGTA 254
>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 18 AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
+G P L G A A +++ PS PQ + P GR+ PWPL S SH+
Sbjct: 55 SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113
Query: 69 GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
P P S L+E + T A P R + RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.30
Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 31/167 (18%)
Query: 140 GIAPPERQESPWRSPGQRARPAGRPAAQEL---------LDPCTRETLLGALSQCPKGSA 190
G P ++ PW + ++ A R AA + P E + + G
Sbjct: 97 GAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGG 156
Query: 191 RFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPWSLSFCDD 250
R DG + D R L R P + +A P P +P L
Sbjct: 157 R-DGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPEL--------HG 207
Query: 251 AWPSVLVQPAP--------SAIWDF-----WEATTPSCGSCSRVSFA 284
WP PAP +++W + W AT P+CG +R A
Sbjct: 208 RWPGPAGTPAPPGASRELRTSLWRWVNLGVWSATAPACGRGTRAGTA 254
>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 18 AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
+G P L G A A +++ PS PQ + P GR+ PWPL S SH+
Sbjct: 55 SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113
Query: 69 GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
P P S L+E + T A P R + RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.1 bits (74), Expect = 0.30
Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 30/215 (13%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
P L P+++ P T + P G P P + L + Q G PS+ +
Sbjct: 335 PSGLTKPLAQQPGTVKPPVQPPGTTKP-PAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393
Query: 86 PAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE 145
P + ++ PA P +G A + G A PG T +PV
Sbjct: 394 PPGVGKTPAQ-QPGPAKPPTQQVGTPKPLAQQ---PGLQSPAKAPGPTKTPV-------- 441
Query: 146 RQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKG 205
+Q P + P Q+A P G+ +AQ+ L G P+ G
Sbjct: 442 QQPGPGKIPAQQAGP-GKTSAQQTGPTKPPSQLPGPAKPPPQ---------------QPG 485
Query: 206 GRRNLQPRPSAFKPLSKN-GAVASFVPRPGPLKPS 239
+ +P + KP S+ G+ +PGP KPS
Sbjct: 486 PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPS 520
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.1 bits (74), Expect = 0.30
Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 30/215 (13%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
P L P+++ P T + P G P P + L + Q G PS+ +
Sbjct: 335 PSGLTKPLAQQPGTVKPPVQPPGTTKP-PAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393
Query: 86 PAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE 145
P + ++ PA P +G A + G A PG T +PV
Sbjct: 394 PPGVGKTPAQ-QPGPAKPPTQQVGTPKPLAQQ---PGLQSPAKAPGPTKTPV-------- 441
Query: 146 RQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKG 205
+Q P + P Q+A P G+ +AQ+ L G P+ G
Sbjct: 442 QQPGPGKIPAQQAGP-GKTSAQQTGPTKPPSQLPGPAKPPPQ---------------QPG 485
Query: 206 GRRNLQPRPSAFKPLSKN-GAVASFVPRPGPLKPS 239
+ +P + KP S+ G+ +PGP KPS
Sbjct: 486 PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPS 520
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 32.7 bits (73), Expect = 0.39
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
P + A ++P+T Q P P G +S P SH RP P H ++ +P +
Sbjct: 265 PHQIPASTPQNPATSQHPPPPPGHRSQAP------SH-------RPPPPGHRVQHQPQKR 311
Query: 86 PAKPQRVVSEGWRRPALP 103
P P + P LP
Sbjct: 312 PPAPSGTQVHQQKGPPLP 329
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 32.7 bits (73), Expect = 0.39
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 2 GAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSL 58
G A P S + G AGEP GP + P S P +P PQG P L+ L
Sbjct: 633 GEAGPPGSGEKGERGAAGEPGPHGPPGV--PGSVGPKGSSGSPGPQGPPGPVGLQGL 687
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 32.7 bits (73), Expect = 0.39
Identities = 56/232 (24%), Positives = 77/232 (33%), Gaps = 27/232 (11%)
Query: 30 AAPMSRSPSTPQ--TTPSPQGRQSPWPL-RSLTQSHIQYFQWGRPVPSTHLIEVRPTQDP 86
A P + STP T PSP+G + PL + + + P+T ++ PT
Sbjct: 1025 ATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPA 1084
Query: 87 AKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPER 146
A P PA P A KGGL P +P T PP
Sbjct: 1085 ATPPSPKG----GPATPSPKGAPMP-PAATPPSPKGGLA---TPPHKGAPTTPAATPPSP 1136
Query: 147 QESPWRSP--GQRARPAGRPAAQE----LLDPCTRETLLGALSQCPKGSARFDGPLWFEV 200
+ P G PA P + + P T A PKG P
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT 1196
Query: 201 SDS------KGGRRNLQPRPS----AFKPLSKNGAVASFVPRPGPLKPSLGP 242
+ + KGG P+ + A P S G +A+ P+ P P+ P
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1248
Score = 30.8 bits (68), Expect = 1.5
Identities = 51/213 (23%), Positives = 68/213 (31%), Gaps = 33/213 (15%)
Query: 2 GAAAPAESADLGNFWKAGEPLLQG---PDALAAPMSR-SPSTPQTTPS-------PQGRQ 50
GA P + G P +G P A+ P + +P+ P TTPS P ++
Sbjct: 1308 GAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKE 1367
Query: 51 SPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALP-----GE 105
P P + T SH P P P DP P + + PA P
Sbjct: 1368 GPTP-PAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAA 1426
Query: 106 TALGRDLS-----------CAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSP 154
T DL+ KGG P P + PP +E P +P
Sbjct: 1427 TPSKGDLTPPAVTPVSLKKAPATSAPKGGPA---TPSSKGDPTLPAVTPPSPKEPP--AP 1481
Query: 155 GQRARPAGRPAAQELLDPCTRETLLGALSQCPK 187
Q A + A P TL + PK
Sbjct: 1482 KQVATSSSPKKAPATPAPMGAPTLPAVIPSSPK 1514
Score = 30.4 bits (67), Expect = 1.9
Identities = 61/244 (25%), Positives = 80/244 (32%), Gaps = 33/244 (13%)
Query: 18 AGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHL 77
A PL +G A SP TPS +G +P P + S + G PS
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSLKG--APTPPAATPPSP----KGGPATPSPKG 1101
Query: 78 IEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPV 137
+ P P P+ G P G A KGGL P +P
Sbjct: 1102 APMPPAATPPSPK----GGLATPPHKGAPT----TPAATPPSPKGGLA---TPPPKGAPT 1150
Query: 138 TIGIAPPERQESPWRSP--GQRARPAGRPAAQE--LLDPCTR--ETLLGALSQCPKGSAR 191
T PP + P G PA P + + L P + T A PKG
Sbjct: 1151 TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210
Query: 192 FDGPLWFEVSDS------KGGRRNLQPRPS----AFKPLSKNGAVASFVPRPGPLKPSLG 241
P + + KGG P+ + A P S G A+ P+ P P+
Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270
Query: 242 PWSL 245
P SL
Sbjct: 1271 PPSL 1274
Score = 29.3 bits (64), Expect = 4.3
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 129 NPGRTWSPV-TIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPK 187
+P T +P+ T+ +AP E P P PAG P + +D + + L ++ PK
Sbjct: 713 SPQNTCAPLATLVLAP----EIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPK 768
Query: 188 GSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGP 242
D + SKG L PS PL +V+ RP K S GP
Sbjct: 769 ECPTEDSGA-SATASSKGTLTYLADSPS---PLGV--SVSPQTKRPPTKKGSAGP 817
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 32.3 bits (72), Expect = 0.51
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
P A + SPSTP T Q P PL + + + + G +P+ S +
Sbjct: 1621 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1680
Query: 80 VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
P P +P + + R PALP ET LS A +G
Sbjct: 1681 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1720
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 32.3 bits (72), Expect = 0.51
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
P A + SPSTP T Q P PL + + + + G +P+ S +
Sbjct: 1693 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1752
Query: 80 VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
P P +P + + R PALP ET LS A +G
Sbjct: 1753 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1792
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 32.3 bits (72), Expect = 0.51
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 26 PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
P A + SPSTP T Q P PL + + + + G +P+ S +
Sbjct: 1621 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1680
Query: 80 VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
P P +P + + R PALP ET LS A +G
Sbjct: 1681 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1720
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,664,788
Number of Sequences: 37866
Number of extensions: 979890
Number of successful extensions: 4587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 4371
Number of HSP's gapped (non-prelim): 392
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.