Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239735603

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239735603 POM121 membrane glycoprotein-like 12 [Homo
sapiens]
         (296 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]      631   0.0  
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]       148   5e-36
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]           67   2e-11
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]           62   6e-10
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]    60   2e-09
gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo ...    47   2e-05
gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]             41   0.001
gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]            41   0.001
gi|239742514 PREDICTED: similar to Putative POM121-like protein ...    37   0.027
gi|13128980 proline rich 14 [Homo sapiens]                             37   0.027
gi|239742580 PREDICTED: similar to Putative POM121-like protein ...    35   0.061
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         35   0.061
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]     35   0.079
gi|112421134 hypothetical protein LOC23742 [Homo sapiens]              35   0.079
gi|117938768 GNAS complex locus alex [Homo sapiens]                    35   0.10 
gi|238859557 regulatory factor X1 [Homo sapiens]                       34   0.13 
gi|83367077 mucin 16 [Homo sapiens]                                    33   0.23 
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]            33   0.30 
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]            33   0.30 
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]            33   0.30 
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ...    33   0.30 
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]            33   0.30 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          33   0.30 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          33   0.30 
gi|156071472 CD2 molecule [Homo sapiens]                               33   0.39 
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 33   0.39 
gi|163965366 nascent polypeptide-associated complex alpha subuni...    33   0.39 
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              32   0.51 
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              32   0.51 
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]              32   0.51 

>gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]
          Length = 296

 Score =  631 bits (1628), Expect = 0.0
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ 60
           MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ
Sbjct: 1   MGAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQ 60

Query: 61  SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM 120
           SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM
Sbjct: 61  SHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCM 120

Query: 121 KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG 180
           KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG
Sbjct: 121 KGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLG 180

Query: 181 ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL 240
           ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL
Sbjct: 181 ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSL 240

Query: 241 GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS 296
           GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS
Sbjct: 241 GPWSLSFCDDAWPSVLVQPAPSAIWDFWEATTPSCGSCSRVSFALEVTQSAGPFGS 296


>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
          Length = 1035

 Score =  148 bits (374), Expect = 5e-36
 Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 12/216 (5%)

Query: 36  SPSTPQTTPS-----PQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQ 90
           SPS+P    +     P  R+ P PL  + +  +Q+     P P    +  RP  DPA P 
Sbjct: 11  SPSSPAQVRTDLPERPTKRRPPQPLHQVHR--VQFVHRAHPAPRYRPVRRRPNLDPANPT 68

Query: 91  R-VVSEGWRR-PALPGETA-LGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQ 147
             + +E WRR P    + + LG   S  WE  +K  +    +P   WSPVTI I PP+++
Sbjct: 69  TWLANEAWRRFPMKKSQNSPLGPLPSDWWESYLKRTIWSLRHPRPIWSPVTIRITPPDQR 128

Query: 148 ESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKGGR 207
             P  SP      AG P ++EL DPC++ET+L AL +C KG  R + PL+ E  DSK  R
Sbjct: 129 VPPSTSPEDVIALAGLPPSEELADPCSKETVLRALRECRKGKGRLEEPLFPESLDSK--R 186

Query: 208 RNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPW 243
           R+ + RPSAFKPL KNG + SFVPRPGPLK SL  W
Sbjct: 187 RSPETRPSAFKPLMKNGTLTSFVPRPGPLKRSLHSW 222


>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
          Length = 526

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 106 TALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSPGQRARPAGRPA 165
           + LG   +  W G  K  +    N     SPVT+ IAPP+R+ S    P Q         
Sbjct: 103 SCLGVLPTVCWNGYHKKAVLSPRNSRMVCSPVTVRIAPPDRRFSRSAIPEQIISSTLSSP 162

Query: 166 AQELLDPCTRETLLGALSQCPKG-SARFDGPLWFEVSDSKGGRRNLQPRP-SAFKPLSKN 223
           +    DPC +ET+L AL +  K  +   +  ++ +  ++K  R +      SAF+PL  N
Sbjct: 163 SSNAPDPCAKETVLSALKEKEKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVAN 222

Query: 224 GAVASFVPRPGPLKPSLGPWS 244
           G  ASFVP+PG LK  L   S
Sbjct: 223 GVPASFVPKPGSLKRGLNSQS 243


>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
          Length = 984

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKG-SARFD 193
           SPVT+ IAPP+R+ S    P Q         +    DPC +ET+L AL +  K  +   +
Sbjct: 4   SPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKEKKRTVEEE 63

Query: 194 GPLWFEVSDSKGGRRNLQPRP-SAFKPLSKNGAVASFVPRPGPLKPSLGPWS 244
             ++ +  ++K  R +      SAF+PL  NG  ASFVP+PG LK  L   S
Sbjct: 64  DQIFLDGQENKRRRHDSSGSGHSAFEPLVANGVPASFVPKPGSLKRGLNSQS 115


>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
          Length = 987

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKG-SARFD 193
           SPVT+ IAPP+R+ S    P Q         +    DPC +ET+L AL +  K  +   +
Sbjct: 4   SPVTVRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63

Query: 194 GPLWFEVSDSKGGRRNLQPRP-SAFKPLSKNGAVASFVPRPGPLKPSLGPWS 244
             ++ +  ++K  R +      SAF+PL  +G  ASFVP+PG LK  L   S
Sbjct: 64  DQIFLDGQENKRRRHDSSGSGHSAFEPLVASGVPASFVPKPGSLKRGLNSQS 115


>gi|239757688 PREDICTED: similar to POM121-like 1, partial [Homo
           sapiens]
          Length = 346

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 148 ESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKGGR 207
           +S W  PG  + P G    +   D C  + +L AL +   G    D      V ++ G +
Sbjct: 2   DSLW-GPGAGSHPFGVHNTRLSPDLCPGKIVLRALKESGAGMPEQDKDP--RVQENPGDQ 58

Query: 208 RNLQP----RPSAFKPLSKNGAVASFVPRPGPLKPSL 240
           R +       PSAF+PL  NG ++ FVPRPGPL+  L
Sbjct: 59  RRVPEVTGDAPSAFRPLRDNGGLSPFVPRPGPLQTDL 95


>gi|23510406 POMZP3 fusion protein isoform 2 [Homo sapiens]
          Length = 115

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193
           SPVT+ IAPP+R+ S    P Q         +    DPC +ET+L AL +   K +   +
Sbjct: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63

Query: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235
             ++ +  ++K       L    SAFK           VPRPGP
Sbjct: 64  DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96


>gi|111160500 POMZP3 fusion protein isoform 1 [Homo sapiens]
          Length = 187

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 135 SPVTIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQ-CPKGSARFD 193
           SPVT+ IAPP+R+ S    P Q         +    DPC +ET+L AL +   K +   +
Sbjct: 4   SPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEE 63

Query: 194 GPLWFEVSDSKGG--RRNLQPRPSAFKPLSKNGAVASFVPRPGP 235
             ++ +  ++K       L    SAFK           VPRPGP
Sbjct: 64  DQIFLDGQENKRSCLVDGLTDASSAFK-----------VPRPGP 96


>gi|239742514 PREDICTED: similar to Putative POM121-like protein
           1-like [Homo sapiens]
          Length = 896

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 215 SAFKPLSKNGAVASFVPRPGPLKPSL 240
           SAF PL  NG ++ FVPRPGPL+  L
Sbjct: 29  SAFWPLRDNGGLSPFVPRPGPLQTDL 54


>gi|13128980 proline rich 14 [Homo sapiens]
          Length = 585

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 70/267 (26%), Positives = 96/267 (35%), Gaps = 72/267 (26%)

Query: 23  LQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPL-------RSLTQSHIQYFQWGR----- 70
           L+ P     P    PSTP  +   + R SPW L       RS  +S    F         
Sbjct: 214 LESPPTAPDPALELPSTPPPSSLLRPRLSPWGLAPLFRSVRSKLESFADIFLTPNKTPQP 273

Query: 71  PVPSTHL-IEVRPTQDPAKPQRVVSEG------------WRR-----PALPGETALGRDL 112
           P PS  + +E++     A+ Q   +EG            WR      PAL  + +LGR  
Sbjct: 274 PPPSPPMKLELKIAISEAE-QSGAAEGTASVSPRPPIRQWRTQDHNTPALLPKPSLGRSY 332

Query: 113 SCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE------RQESPWRSPGQRARPAGRPAA 166
           SC   G    G C       TW P     APP+      R+ +       RA P  RP  
Sbjct: 333 SCPDLGPPGPGTC-------TWPP-----APPQPSRPRPRRHTVGGGEMARAPPPPRPCL 380

Query: 167 QELLDPCTRETLLGALSQCPK--------GSARFDGPLWFEVSDSKGGRRNLQPRPSAFK 218
           ++ + P      LG +   P          S  F  P    +  +KG     +PR S  +
Sbjct: 381 RKEVFP------LGGVGASPSLTTSCSSTASTSFSEPAEPRLGSTKG----KEPRASKDQ 430

Query: 219 PLSK-----NGAVASFVPRPGPLKPSL 240
            LS+      G V+ F  R  P +P L
Sbjct: 431 VLSEPETKTMGKVSRFRIRRTPARPQL 457


>gi|239742580 PREDICTED: similar to Putative POM121-like protein
           1-like [Homo sapiens]
          Length = 897

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 215 SAFKPLSKNGAVASFVPRPGPLKPSL 240
           SAF PL  NG  + FVPRPGPL+  L
Sbjct: 29  SAFWPLRDNGGPSPFVPRPGPLQTDL 54


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 71/280 (25%), Positives = 100/280 (35%), Gaps = 79/280 (28%)

Query: 18   AGEPLLQ-----GPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPV 72
            AG PL+      GP  L      S S PQ  PSP G  S                 G   
Sbjct: 1056 AGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLS-----------------GTSR 1098

Query: 73   PSTHLIEVRPTQDPAKPQRVVSEGWRRPA-LPGETALGRDLSCAWEGCMKGGLCRAWNPG 131
            P T  + ++PT  P  P R+       PA  PG ++L + L+                PG
Sbjct: 1099 PPTPTLSLKPT--PPAPVRL------SPAPPPGSSSLLKPLTVP--------------PG 1136

Query: 132  RTWSPVTIGIAPPERQESPWRSPGQRARPAGRPAAQEL-LDPCTRETL----------LG 180
             T+ P     A      +   +    A PA  PA Q L L P  +  L          L 
Sbjct: 1137 YTFPP-----AAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLA 1191

Query: 181  ALSQCPKGSARFDGPLWFEVSDSKGGRRNLQPRPSAF---KPLSKN-------GAVASFV 230
            +L+Q P  +A    PL F++  +K      Q R  A    +PL +N       G     +
Sbjct: 1192 SLAQRPVANAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLI 1251

Query: 231  PRPG------PLKPSLGPWSLSFCDDAWPSVLVQPAPSAI 264
             +P        + P+ GP  +S    + PS    PAP+ +
Sbjct: 1252 SQPAHVALIQAVAPTPGPTPVSVLPSSTPS--TTPAPTGL 1289


>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
          Length = 1056

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 24  QGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPT 83
           +GP    +P S    +PQ      G    W L + +QS +      +P   + L +    
Sbjct: 454 RGPGPRPSPASSQEGSPQLQHHSSGILPKWTLDA-SQSSLLETDGEQP---SSLKKKEAG 509

Query: 84  QDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAP 143
           + P   + V SEG  RPA  G+      L+ A    ++  +  +W PG   SP+    +P
Sbjct: 510 EAPKPGEEVKSEGTARPAETGDVQPDIHLTSAEHENLRTPMNSSWLPG---SPMPQAQSP 566

Query: 144 PERQESP 150
            E Q  P
Sbjct: 567 EEGQRPP 573


>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
          Length = 1156

 Score = 35.0 bits (79), Expect = 0.079
 Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 28/218 (12%)

Query: 23  LQGPDALA-APMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVR 81
           L GP   A AP+SR  S P    S     +P P R L + +       R  PS   I V 
Sbjct: 17  LPGPGRGAPAPLSRDASPPGRAHSVP---TPRPFRGLFRRN------ARRRPSAASIFVA 67

Query: 82  PTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGI 141
           P +    P+   +     PA+    A+            K  +  A NP R   P ++ I
Sbjct: 68  PKRPCPLPRAAAAPLGVLPAVGWGLAI-----------RKTPMLPARNPPRFGHPSSVRI 116

Query: 142 APPERQES-PWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFE- 199
            PP R  +    SP + A  A +P    LL+    ET + A  + P+   + + P+  E 
Sbjct: 117 PPPSRMFTLLLPSPREPAVKARKPIPATLLE----ETEVWA-QEGPRRVKKDEDPVQIEG 171

Query: 200 VSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLK 237
             D K    +     S  +     G VASF   PGPL+
Sbjct: 172 EDDEKRTPLSSGEASSTSRSQGTQGDVASFRCSPGPLE 209


>gi|117938768 GNAS complex locus alex [Homo sapiens]
          Length = 626

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 3   AAAPAESADLGNFWKAGEPLLQGPDA---LAAPMSRSPSTPQTTPSPQGRQSPWPLRSLT 59
           AA P   +DL    +A  P  + PD    LAAP   S + P T  +PQ R +  P RS  
Sbjct: 220 AAHPKRLSDLLLTSRAAAPGWRSPDPRSRLAAPPLGSTTLPSTWTAPQSRLTARPSRS-- 277

Query: 60  QSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALP 103
                      P P     E R  Q   K QR     W+ P +P
Sbjct: 278 -----------PEPQIRESEQRDPQLRRKQQR-----WKEPLMP 305


>gi|238859557 regulatory factor X1 [Homo sapiens]
          Length = 979

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 34/100 (34%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 20  EPLLQGPDALAAPMSRSPSTPQTTPSPQ---GRQSPWPLRSLTQSHIQYFQWGRPVPSTH 76
           +P    P   AAP    P T   TP PQ     QSP P         QY      VP+  
Sbjct: 26  QPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPS 85

Query: 77  LIEVRPTQDPAKPQRV---VSEGWRR------PALPGETA 107
                PT  PA  Q +   VSEG  R       A PG TA
Sbjct: 86  QPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEASPGSTA 125


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 22   LLQGPDALAAPMSRSPSTPQT---TPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLI 78
            +  GPD  +APM+ SP TP T   T +    QS  PL +++   +       P  ++  +
Sbjct: 1951 ITSGPDINSAPMTHSPITPPTIVWTSTGTIEQSTQPLHAVSSEKVSVQTQSTPYVNSVAV 2010

Query: 79   EVRPTQD 85
               PT +
Sbjct: 2011 SASPTHE 2017


>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 18  AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
           +G P L G  A A  +++ PS PQ   + P GR+         PWPL S   SH+     
Sbjct: 55  SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113

Query: 69  GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
             P P  S  L+E + T   A P R   +  RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146


>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 140 GIAPPERQESPWRSPGQRARPAGRPAAQEL---------LDPCTRETLLGALSQCPKGSA 190
           G  P  ++  PW    + ++ A R AA            + P   E    +  +   G  
Sbjct: 97  GAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGG 156

Query: 191 RFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPWSLSFCDD 250
           R DG +     D    R  L  R     P  +   +A   P P   +P L          
Sbjct: 157 R-DGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPEL--------HG 207

Query: 251 AWPSVLVQPAP--------SAIWDF-----WEATTPSCGSCSRVSFA 284
            WP     PAP        +++W +     W AT P+CG  +R   A
Sbjct: 208 RWPGPAGTPAPPGASRELRTSLWRWVNLGVWSATAPACGRGTRAGTA 254


>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 18  AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
           +G P L G  A A  +++ PS PQ   + P GR+         PWPL S   SH+     
Sbjct: 55  SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113

Query: 69  GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
             P P  S  L+E + T   A P R   +  RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146


>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
           sapiens]
          Length = 261

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 140 GIAPPERQESPWRSPGQRARPAGRPAAQEL---------LDPCTRETLLGALSQCPKGSA 190
           G  P  ++  PW    + ++ A R AA            + P   E    +  +   G  
Sbjct: 97  GAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGG 156

Query: 191 RFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGPWSLSFCDD 250
           R DG +     D    R  L  R     P  +   +A   P P   +P L          
Sbjct: 157 R-DGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPEL--------HG 207

Query: 251 AWPSVLVQPAP--------SAIWDF-----WEATTPSCGSCSRVSFA 284
            WP     PAP        +++W +     W AT P+CG  +R   A
Sbjct: 208 RWPGPAGTPAPPGASRELRTSLWRWVNLGVWSATAPACGRGTRAGTA 254


>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 18  AGEPLLQGPDALAAPMSRSPSTPQTTPS-PQGRQ--------SPWPLRSLTQSHIQYFQW 68
           +G P L G  A A  +++ PS PQ   + P GR+         PWPL S   SH+     
Sbjct: 55  SGRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPL-SPRPSHLPSRVS 113

Query: 69  GRPVP--STHLIEVRPTQDPAKPQRVVSEGWRRPA 101
             P P  S  L+E + T   A P R   +  RRPA
Sbjct: 114 AAPPPAGSRGLLETQDTSGFASPGRRPRD--RRPA 146


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 30/215 (13%)

Query: 26  PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
           P  L  P+++ P T +    P G   P P + L  +     Q G   PS+     +    
Sbjct: 335 PSGLTKPLAQQPGTVKPPVQPPGTTKP-PAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393

Query: 86  PAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE 145
           P    +  ++    PA P    +G     A +    G    A  PG T +PV        
Sbjct: 394 PPGVGKTPAQ-QPGPAKPPTQQVGTPKPLAQQ---PGLQSPAKAPGPTKTPV-------- 441

Query: 146 RQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKG 205
           +Q  P + P Q+A P G+ +AQ+         L G     P+                 G
Sbjct: 442 QQPGPGKIPAQQAGP-GKTSAQQTGPTKPPSQLPGPAKPPPQ---------------QPG 485

Query: 206 GRRNLQPRPSAFKPLSKN-GAVASFVPRPGPLKPS 239
             +    +P + KP S+  G+      +PGP KPS
Sbjct: 486 PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPS 520


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 30/215 (13%)

Query: 26  PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
           P  L  P+++ P T +    P G   P P + L  +     Q G   PS+     +    
Sbjct: 335 PSGLTKPLAQQPGTVKPPVQPPGTTKP-PAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393

Query: 86  PAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPE 145
           P    +  ++    PA P    +G     A +    G    A  PG T +PV        
Sbjct: 394 PPGVGKTPAQ-QPGPAKPPTQQVGTPKPLAQQ---PGLQSPAKAPGPTKTPV-------- 441

Query: 146 RQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPKGSARFDGPLWFEVSDSKG 205
           +Q  P + P Q+A P G+ +AQ+         L G     P+                 G
Sbjct: 442 QQPGPGKIPAQQAGP-GKTSAQQTGPTKPPSQLPGPAKPPPQ---------------QPG 485

Query: 206 GRRNLQPRPSAFKPLSKN-GAVASFVPRPGPLKPS 239
             +    +P + KP S+  G+      +PGP KPS
Sbjct: 486 PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPS 520


>gi|156071472 CD2 molecule [Homo sapiens]
          Length = 351

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 26  PDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQD 85
           P  + A   ++P+T Q  P P G +S  P      SH       RP P  H ++ +P + 
Sbjct: 265 PHQIPASTPQNPATSQHPPPPPGHRSQAP------SH-------RPPPPGHRVQHQPQKR 311

Query: 86  PAKPQRVVSEGWRRPALP 103
           P  P        + P LP
Sbjct: 312 PPAPSGTQVHQQKGPPLP 329


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 2   GAAAPAESADLGNFWKAGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSL 58
           G A P  S + G    AGEP   GP  +  P S  P     +P PQG   P  L+ L
Sbjct: 633 GEAGPPGSGEKGERGAAGEPGPHGPPGV--PGSVGPKGSSGSPGPQGPPGPVGLQGL 687


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 56/232 (24%), Positives = 77/232 (33%), Gaps = 27/232 (11%)

Query: 30   AAPMSRSPSTPQ--TTPSPQGRQSPWPL-RSLTQSHIQYFQWGRPVPSTHLIEVRPTQDP 86
            A P  +  STP   T PSP+G  +  PL +    +        +  P+T  ++  PT   
Sbjct: 1025 ATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPA 1084

Query: 87   AKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPER 146
            A P          PA P           A     KGGL     P    +P T    PP  
Sbjct: 1085 ATPPSPKG----GPATPSPKGAPMP-PAATPPSPKGGLA---TPPHKGAPTTPAATPPSP 1136

Query: 147  QESPWRSP--GQRARPAGRPAAQE----LLDPCTRETLLGALSQCPKGSARFDGPLWFEV 200
            +      P  G    PA  P + +       P    T   A    PKG      P     
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT 1196

Query: 201  SDS------KGGRRNLQPRPS----AFKPLSKNGAVASFVPRPGPLKPSLGP 242
            + +      KGG     P+ +    A  P S  G +A+  P+  P  P+  P
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1248



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 51/213 (23%), Positives = 68/213 (31%), Gaps = 33/213 (15%)

Query: 2    GAAAPAESADLGNFWKAGEPLLQG---PDALAAPMSR-SPSTPQTTPS-------PQGRQ 50
            GA  P  +         G P  +G   P A+  P  + +P+ P TTPS       P  ++
Sbjct: 1308 GAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKE 1367

Query: 51   SPWPLRSLTQSHIQYFQWGRPVPSTHLIEVRPTQDPAKPQRVVSEGWRRPALP-----GE 105
             P P  + T SH        P P        P  DP  P  +     + PA P       
Sbjct: 1368 GPTP-PAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAA 1426

Query: 106  TALGRDLS-----------CAWEGCMKGGLCRAWNPGRTWSPVTIGIAPPERQESPWRSP 154
            T    DL+                  KGG      P     P    + PP  +E P  +P
Sbjct: 1427 TPSKGDLTPPAVTPVSLKKAPATSAPKGGPA---TPSSKGDPTLPAVTPPSPKEPP--AP 1481

Query: 155  GQRARPAGRPAAQELLDPCTRETLLGALSQCPK 187
             Q A  +    A     P    TL   +   PK
Sbjct: 1482 KQVATSSSPKKAPATPAPMGAPTLPAVIPSSPK 1514



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 61/244 (25%), Positives = 80/244 (32%), Gaps = 33/244 (13%)

Query: 18   AGEPLLQGPDALAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHL 77
            A  PL +G     A    SP     TPS +G  +P P  +   S     + G   PS   
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSLKG--APTPPAATPPSP----KGGPATPSPKG 1101

Query: 78   IEVRPTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGGLCRAWNPGRTWSPV 137
              + P   P  P+     G   P   G          A     KGGL     P    +P 
Sbjct: 1102 APMPPAATPPSPK----GGLATPPHKGAPT----TPAATPPSPKGGLA---TPPPKGAPT 1150

Query: 138  TIGIAPPERQESPWRSP--GQRARPAGRPAAQE--LLDPCTR--ETLLGALSQCPKGSAR 191
            T    PP  +      P  G    PA  P + +  L  P  +   T   A    PKG   
Sbjct: 1151 TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210

Query: 192  FDGPLWFEVSDS------KGGRRNLQPRPS----AFKPLSKNGAVASFVPRPGPLKPSLG 241
               P     + +      KGG     P+ +    A  P S  G  A+  P+  P  P+  
Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270

Query: 242  PWSL 245
            P SL
Sbjct: 1271 PPSL 1274



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 129 NPGRTWSPV-TIGIAPPERQESPWRSPGQRARPAGRPAAQELLDPCTRETLLGALSQCPK 187
           +P  T +P+ T+ +AP    E P   P     PAG P   + +D  +  + L  ++  PK
Sbjct: 713 SPQNTCAPLATLVLAP----EIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPK 768

Query: 188 GSARFDGPLWFEVSDSKGGRRNLQPRPSAFKPLSKNGAVASFVPRPGPLKPSLGP 242
                D       + SKG    L   PS   PL    +V+    RP   K S GP
Sbjct: 769 ECPTEDSGA-SATASSKGTLTYLADSPS---PLGV--SVSPQTKRPPTKKGSAGP 817


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 26   PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
            P    A  + SPSTP T       Q P  PL + +   +   + G     +P+ S    +
Sbjct: 1621 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1680

Query: 80   VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
              P    P +P +  +   R PALP ET     LS A +G
Sbjct: 1681 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1720


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 26   PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
            P    A  + SPSTP T       Q P  PL + +   +   + G     +P+ S    +
Sbjct: 1693 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1752

Query: 80   VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
              P    P +P +  +   R PALP ET     LS A +G
Sbjct: 1753 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1792


>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 26   PDALAAPMSRSPSTPQTTPSPQGRQSPW-PLRSLTQSHIQYFQWG-----RPVPSTHLIE 79
            P    A  + SPSTP T       Q P  PL + +   +   + G     +P+ S    +
Sbjct: 1621 PQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPMGSPASPQ 1680

Query: 80   VRPTQD-PAKPQRVVSEGWRRPALPGETALGRDLSCAWEG 118
              P    P +P +  +   R PALP ET     LS A +G
Sbjct: 1681 PHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTATDG 1720


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,664,788
Number of Sequences: 37866
Number of extensions: 979890
Number of successful extensions: 4587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 4371
Number of HSP's gapped (non-prelim): 392
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press