Guide to the Human Genome
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Name: ATG9A Sequence: fasta or formatted (839aa) NCBI GI: 116089287
Description:

APG9 autophagy 9-like 1

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt mRNA [839aa] APG9 autophagy 9-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         67           3
 C cysteine            2.0         17           2
 D aspartate           3.0         25           1
 E glutamate           7.0         59           2
 F phenylalanine       5.4         45           2
 G glycine             6.6         55           2
 H histidine           4.1         34           2
 I isoleucine          5.1         43           2
 K lysine              2.4         20           1
 L leucine            11.9        100           2
 M methionine          1.7         14           1
 N asparagine          2.6         22           1
 P proline             6.1         51           2
 Q glutamine           5.6         47           2
 R arginine            6.0         50           2
 S serine              7.5         63           2
 T threonine           4.3         36           2
 V valine              6.0         50           2
 W tryptophan          1.8         15           1
 Y tyrosine            3.1         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   APG9 autophagy 9-like 1 
ATG9A                 1.000   APG9 autophagy 9-like 1 
ATG9B                 0.375   ATG9 autophagy related 9 homolog B 
DNM1                  0.007   dynamin 1 isoform 1 
DIDO1                 0.007   death inducer-obliterator 1 isoform c 
NFKBIE                0.007   nuclear factor of kappa light polypeptide gene enhan...
PRB3                  0.007   proline-rich protein BstNI subfamily 3 precursor [H...
AATK                  0.007   apoptosis-associated tyrosine kinase 
C6orf174              0.006   hypothetical protein LOC387104 
RP1L1                 0.006   retinitis pigmentosa 1-like 1 
ARHGEF5               0.006   rho guanine nucleotide exchange factor 5 
SFPQ                  0.006   splicing factor proline/glutamine rich (polypyrimidin...
CHERP                 0.005   calcium homeostasis endoplasmic reticulum protein [...
LOC100129654          0.005   PREDICTED: similar to transcription factor 23 [Homo...
CAST                  0.005   calpastatin isoform a 
VPS37B                0.005   vacuolar protein sorting 37B 
LOC100129654          0.005   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.005   PREDICTED: similar to transcription factor 23 [Homo...
PRR18                 0.005   proline rich region 18 
FAM160A2              0.005   hypothetical protein LOC84067 isoform 2 
PRDM8                 0.005   PR domain containing 8 
PRDM8                 0.005   PR domain containing 8 
SHROOM4               0.004   shroom family member 4 
LOC100131251          0.004   PREDICTED: hypothetical protein 
LOC100131251          0.004   PREDICTED: hypothetical protein 
LOC728650             0.004   PREDICTED: hypothetical protein 
KLF14                 0.004   Kruppel-like factor 14 
LOC100130882          0.004   PREDICTED: hypothetical protein 
FLJ22184              0.004   PREDICTED: hypothetical protein FLJ22184 
LOC100130882          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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