Guide to the Human Genome
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Name: LOC642838 Sequence: fasta or formatted (295aa) NCBI GI: 169163335
Description:

PREDICTED: similar to hCG1742442

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         32           4
 C cysteine            2.7          8           1
 D aspartate           2.4          7           1
 E glutamate           0.3          1           1
 F phenylalanine       7.1         21           1
 G glycine             6.8         20           2
 H histidine           3.7         11           2
 I isoleucine          2.4          7           1
 K lysine              1.4          4           1
 L leucine            12.2         36           2
 M methionine          0.7          2           1
 N asparagine          1.0          3           2
 P proline            14.6         43           7
 Q glutamine           5.1         15           2
 R arginine            9.5         28           3
 S serine              9.5         28           2
 T threonine           4.4         13           1
 V valine              2.0          6           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1742442 
LOC100132426          0.702   PREDICTED: similar to hCG1742442 
LOC100287723          0.594   PREDICTED: hypothetical protein XP_002342271 
LOC642424             0.591   PREDICTED: similar to hCG1742442 
LOC642424             0.589   PREDICTED: similar to hCG1742442 
LOC642424             0.589   PREDICTED: similar to hCG1742442 
LOC100288993          0.567   PREDICTED: hypothetical protein XP_002342967 
LOC439957             0.451   PREDICTED: similar to hCG1742442 
LOC439957             0.451   PREDICTED: similar to hCG1742442 
LOC650405             0.328   PREDICTED: similar to hCG2042707 
LOC652493             0.301   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.291   PREDICTED: similar to hCG26659 
LOC100291464          0.291   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.291   PREDICTED: similar to hCG26659 
LOC100128009          0.241   PREDICTED: hypothetical protein 
LOC100128009          0.241   PREDICTED: hypothetical protein 
LOC100128009          0.241   PREDICTED: hypothetical protein 
LOC440871             0.224   PREDICTED: similar to hCG2043206 
LOC100291731          0.219   PREDICTED: similar to hCG36857 
LOC100290819          0.219   PREDICTED: hypothetical protein XP_002348319 
LOC100291786          0.219   PREDICTED: similar to hCG2043206 
LOC100291682          0.210   PREDICTED: similar to hCG1686089 
LOC100290992          0.210   PREDICTED: hypothetical protein XP_002347049 
LOC100291027          0.202   PREDICTED: hypothetical protein XP_002348323 
LOC100290481          0.106   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.103   PREDICTED: similar to hCG2040021 
LOC100293440          0.099   PREDICTED: similar to Ig lambda chain 
LOC100293142          0.099   PREDICTED: similar to hCG2040019 
LOC100288750          0.084   PREDICTED: hypothetical protein 
LOC100288750          0.084   PREDICTED: hypothetical protein XP_002343022 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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