Guide to the Human Genome
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Search of human proteins with 239508925

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
         (377 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]           761   0.0  
gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo ...   761   0.0  
gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo ...   761   0.0  
gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]           761   0.0  
gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]            35   0.085
gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo ...    35   0.085
gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo ...    35   0.085
gi|207452735 epiplakin 1 [Homo sapiens]                                35   0.11 
gi|169217271 PREDICTED: hypothetical protein [Homo sapiens]            35   0.14 
gi|89061101 PREDICTED: hypothetical protein [Homo sapiens]             35   0.14 
gi|41151642 PREDICTED: hypothetical protein [Homo sapiens]             35   0.14 
gi|11559923 eukaryotic translation initiation factor 4H isoform ...    34   0.25 
gi|14702180 eukaryotic translation initiation factor 4H isoform ...    34   0.25 
gi|4507147 acyl-CoA:cholesterol acyltransferase 2 [Homo sapiens]       33   0.55 
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]           31   1.6  
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    31   1.6  
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    31   1.6  
gi|221139764 PHD and ring finger domains 1 [Homo sapiens]              31   1.6  
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...    31   2.1  
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]      31   2.1  
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho...    30   2.7  
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom...    30   2.7  
gi|102468717 mediator complex subunit 13 [Homo sapiens]                30   2.7  
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]        30   2.7  
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]        30   2.7  
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            30   2.7  
gi|106507204 hypothetical protein LOC653319 [Homo sapiens]             30   3.6  
gi|21040251 actin-binding Rho activating protein [Homo sapiens]        30   3.6  
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      30   4.6  
gi|239757543 PREDICTED: similar to eukaryotic translation elonga...    30   4.6  

>gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score =  761 bits (1966), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
           MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60

Query: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
           IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120

Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
           ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180

Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
           VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240

Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
           LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300

Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
           FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360

Query: 361 LRPRDRARGGCGCCACH 377
           LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377


>gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo
           sapiens]
          Length = 377

 Score =  761 bits (1966), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
           MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60

Query: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
           IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120

Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
           ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180

Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
           VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240

Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
           LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300

Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
           FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360

Query: 361 LRPRDRARGGCGCCACH 377
           LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377


>gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo
           sapiens]
          Length = 377

 Score =  761 bits (1966), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
           MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60

Query: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
           IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120

Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
           ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180

Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
           VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240

Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
           LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300

Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
           FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360

Query: 361 LRPRDRARGGCGCCACH 377
           LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377


>gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score =  761 bits (1966), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
           MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1   MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60

Query: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
           IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61  IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120

Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
           ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180

Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
           VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240

Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
           LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300

Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
           FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360

Query: 361 LRPRDRARGGCGCCACH 377
           LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377


>gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 201

 Score = 35.4 bits (80), Expect = 0.085
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109

Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164

Query: 229 H 229
           H
Sbjct: 165 H 165


>gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo
           sapiens]
          Length = 201

 Score = 35.4 bits (80), Expect = 0.085
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109

Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164

Query: 229 H 229
           H
Sbjct: 165 H 165


>gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
           sapiens]
          Length = 201

 Score = 35.4 bits (80), Expect = 0.085
 Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
           A +VVLL+  P      E  H   G + G  VEG+K   G    V  G+ GGL  +   L
Sbjct: 50  AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109

Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
            G H   V   VVP  L V    + +G  A+LD+ V+Q     LA SL   + +    TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164

Query: 229 H 229
           H
Sbjct: 165 H 165


>gi|207452735 epiplakin 1 [Homo sapiens]
          Length = 5090

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/52 (42%), Positives = 25/52 (48%)

Query: 311  LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
            L+ A  G R     GR +G  GR      GE    E AA AAAARR+   LR
Sbjct: 2588 LQDARRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 2639



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/52 (42%), Positives = 25/52 (48%)

Query: 311  LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
            L+ A  G R     GR +G  GR      GE    E AA AAAARR+   LR
Sbjct: 3122 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 3173



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/52 (42%), Positives = 25/52 (48%)

Query: 311  LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
            L+ A  G R     GR +G  GR      GE    E AA AAAARR+   LR
Sbjct: 3656 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 3707



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/52 (42%), Positives = 25/52 (48%)

Query: 311  LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
            L+ A  G R     GR +G  GR      GE    E AA AAAARR+   LR
Sbjct: 4724 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 4775



 Score = 33.5 bits (75), Expect = 0.32
 Identities = 21/52 (40%), Positives = 24/52 (46%)

Query: 311  LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
            L+ A  G R     GR +G  GR      GE    E AA  AAARR+   LR
Sbjct: 4190 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAATAAARRQEQTLR 4241


>gi|169217271 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 273

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 69  FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
           FL GKV PP P P R P    K  T V + A A  S  ++ V           +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192

Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
           A  LH   G + G+    ++ GD   + G+      +  FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228


>gi|89061101 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 273

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 69  FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
           FL GKV PP P P R P    K  T V + A A  S  ++ V           +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192

Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
           A  LH   G + G+    ++ GD   + G+      +  FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228


>gi|41151642 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 273

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 69  FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
           FL GKV PP P P R P    K  T V + A A  S  ++ V           +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192

Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
           A  LH   G + G+    ++ GD   + G+      +  FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228


>gi|11559923 eukaryotic translation initiation factor 4H isoform 1
           [Homo sapiens]
          Length = 248

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPR 364
           L G G  R   R  G P G   RD  P  G +       E   A+R RL+L+PR
Sbjct: 163 LGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPR 216


>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
           [Homo sapiens]
          Length = 228

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPR 364
           L G G  R   R  G P G   RD  P  G +       E   A+R RL+L+PR
Sbjct: 143 LGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPR 196


>gi|4507147 acyl-CoA:cholesterol acyltransferase 2 [Homo sapiens]
          Length = 522

 Score = 32.7 bits (73), Expect = 0.55
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 28/115 (24%)

Query: 23  LEEAIPGKASFRAGKGRQG-------------------TYCKSPQVGW-YFGKNVKEAIK 62
           L EA+PG    R G+G Q                    TY ++P V W Y  KN  +A+ 
Sbjct: 247 LREAVPGTLRARRGEGIQAPSFSSYLYFLFCPTLIYRETYPRTPYVRWNYVAKNFAQALG 306

Query: 63  DRTGRGFLPGKV-IPPFPSPTRPPTHGKKIKTAVVASACAASSPG---ALIVAFA 113
                 F+ G++ +P F + +R P   +    A+V S   A+ PG    L++ FA
Sbjct: 307 CVLYACFILGRLCVPVFANMSREPFSTR----ALVLSILHATLPGIFMLLLIFFA 357


>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
          Length = 1397

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%)

Query: 294  RLLGQPGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGED----------- 342
            RL  +P F     + HHL    +  RRR   GRP+G G     P A E            
Sbjct: 1206 RLTRRPSF-----SSHHLMPCDTLARRRLARGRPDGEGAGRGGPRAPEPPGSASSSSQES 1260

Query: 343  -RPTERAAEAAAARRRRLELRPRDRA 367
             RP   A  +  +R   L LR R  A
Sbjct: 1261 LRPPAAALASRPSRMEALRLRLRGTA 1286


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGE---------DRPTERAAEAAAARRRRL-- 359
           L G  +GR R RT G   G  GR W P AG            P     EAAA R  R+  
Sbjct: 438 LAGQRAGRARART-GSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLL 496

Query: 360 -ELRPRDRAR 368
            EL   D AR
Sbjct: 497 PELPAVDPAR 506


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGE---------DRPTERAAEAAAARRRRL-- 359
           L G  +GR R RT G   G  GR W P AG            P     EAAA R  R+  
Sbjct: 438 LAGQRAGRARART-GSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLL 496

Query: 360 -ELRPRDRAR 368
            EL   D AR
Sbjct: 497 PELPAVDPAR 506


>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
          Length = 1648

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 317  GRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPRDRAR 368
            GR R  T         R  SPS GE+RP  + ++A + R        R+RA+
Sbjct: 1014 GRTRSGTRSESRDRSSRSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAK 1065


>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
           sapiens]
          Length = 662

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 299 PGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAAR 355
           P +L  +   HH +G+  GR +        G G RD+  S+G    +  ++ A+++R
Sbjct: 568 PSWLENMAYEHHYKGSSRGRSKSSRFSG--GFGARDYRQSSGASSSSFSSSRASSSR 622


>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
          Length = 1318

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 5   GGLEAG----VAGLEDAVGVRGLEEAI----PGKASFRAGKGRQGTYCKSPQVGWYFGKN 56
           GGL A     V GL       GLE       PG        G+  T   SP+ G   G N
Sbjct: 561 GGLSAATGVTVPGLGTGTAALGLENFTLSPSPGYPQGTPAAGQAWTPEPSPRRG---GSN 617

Query: 57  VKEAIKDRTGRGF---LPGKVI---PPFPSPTRPPT 86
           V    ++ TG+G    L G  I   P +PSPT  PT
Sbjct: 618 VVGYDRNNTGKGVEQELQGNSIMEPPSWPSPTEDPT 653


>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
           sapiens]
          Length = 550

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 66  GRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIV---AFAAIVVLLVA- 121
           G GF P   IP     + P  HG     A+ ++A AA++ G + +   A A   VLLV+ 
Sbjct: 303 GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSN 362

Query: 122 -RPER 125
             PER
Sbjct: 363 LNPER 367


>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 66  GRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIV---AFAAIVVLLVA- 121
           G GF P   IP     + P  HG     A+ ++A AA++ G + +   A A   VLLV+ 
Sbjct: 310 GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSN 369

Query: 122 -RPER 125
             PER
Sbjct: 370 LNPER 374


>gi|102468717 mediator complex subunit 13 [Homo sapiens]
          Length = 2174

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 46   SPQVGWYFGKNVKEAIKDRTGRGFLPGKVIPPFPSPTRPPT 86
            +PQ    FG     A    +G G LP    P FP+P  P T
Sbjct: 977  TPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRT 1017


>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 10  GVAGLEDAVGVRGL----EEAIPGKASFRAGKGRQG 41
           GV G++   G+ G+    ++ IPG+  F  GKG QG
Sbjct: 302 GVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQG 337


>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 10  GVAGLEDAVGVRGL----EEAIPGKASFRAGKGRQG 41
           GV G++   G+ G+    ++ IPG+  F  GKG QG
Sbjct: 302 GVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQG 337


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 4   PGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQG 41
           PG L    A   +  GV+G EEA PG A   AG+ R G
Sbjct: 323 PGELAWDAAEEAEVPGVKGSEEAAPGDARADAGEDRVG 360


>gi|106507204 hypothetical protein LOC653319 [Homo sapiens]
          Length = 471

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 295 LLGQPGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAA 354
           LLG  G + +  + + +    +GRR R TLGRP    GR  +P  G  RP       A  
Sbjct: 70  LLGHRGHMRRSESTYSVNS--TGRRGRGTLGRPP--PGRGRNPGGGTLRPAASLPHIAKT 125

Query: 355 RR 356
           +R
Sbjct: 126 QR 127


>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
          Length = 381

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 22 GLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEAIKDRTGRGFLPGKV--IPPFP 79
          G +E+  G A     K R  T   S   GW    N     + +   G+LPG     P  P
Sbjct: 4  GEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSPQAP 63

Query: 80 SPTRPPTHGKKIKTA 94
           P  PPT  +K ++A
Sbjct: 64 KPITPPTSHQKAQSA 78


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 10  GVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVG-----WYFGKNVKEAIKDR 64
           G  G   A G RG     PG   F    GR G    S   G        GK   +  +  
Sbjct: 854 GNVGAPGAKGARG-SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912

Query: 65  TGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPG 106
           TG    PG+V PP P    P   G+K        A A  +PG
Sbjct: 913 TGPAGRPGEVGPPGP----PGPAGEKGSPGADGPAGAPGTPG 950


>gi|239757543 PREDICTED: similar to eukaryotic translation
           elongation factor 1 alpha 2 [Homo sapiens]
          Length = 444

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 46  SPQVGWYFGKNVKEAIKDRTGRGFLPGKVIPPFPS-PTRP--PTHGKKIKTAVVASACAA 102
           SP + W+ G  V+    + +G    P    P  PS PT P  P     I T  V      
Sbjct: 205 SPNMPWFKGWKVERKEGNASGXRLCPRISCPSIPSGPTFPSHPLPSAGIGTVPVGRVETG 264

Query: 103 SSPGALIVAFAAIVVLLVARPEREVVAEELHDER------GVLVGVLVEGVKLGDGVVER 156
                ++V FA + +        EV + E+H E       G  VG  V+ V + D  + R
Sbjct: 265 ILRPGMVVTFAPVNI------TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD--IRR 316

Query: 157 GLLGGLHHRRPFLSGGHFSQVAVVV 181
           G + G     P      F+   +++
Sbjct: 317 GNVCGDSKSDPPQEAAQFTSQVIIL 341


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,507,045
Number of Sequences: 37866
Number of extensions: 841981
Number of successful extensions: 3126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3095
Number of HSP's gapped (non-prelim): 65
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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