Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508925
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754630 PREDICTED: hypothetical protein [Homo sapiens] 761 0.0
gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo ... 761 0.0
gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo ... 761 0.0
gi|239508925 PREDICTED: hypothetical protein [Homo sapiens] 761 0.0
gi|239753064 PREDICTED: hypothetical protein [Homo sapiens] 35 0.085
gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo ... 35 0.085
gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo ... 35 0.085
gi|207452735 epiplakin 1 [Homo sapiens] 35 0.11
gi|169217271 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|89061101 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|41151642 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|11559923 eukaryotic translation initiation factor 4H isoform ... 34 0.25
gi|14702180 eukaryotic translation initiation factor 4H isoform ... 34 0.25
gi|4507147 acyl-CoA:cholesterol acyltransferase 2 [Homo sapiens] 33 0.55
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 31 1.6
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 31 1.6
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 31 1.6
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 31 1.6
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 31 2.1
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 31 2.1
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 30 2.7
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 30 2.7
gi|102468717 mediator complex subunit 13 [Homo sapiens] 30 2.7
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 30 2.7
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 30 2.7
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 30 2.7
gi|106507204 hypothetical protein LOC653319 [Homo sapiens] 30 3.6
gi|21040251 actin-binding Rho activating protein [Homo sapiens] 30 3.6
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 4.6
gi|239757543 PREDICTED: similar to eukaryotic translation elonga... 30 4.6
>gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 761 bits (1966), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
Query: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
Query: 361 LRPRDRARGGCGCCACH 377
LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377
>gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo
sapiens]
Length = 377
Score = 761 bits (1966), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
Query: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
Query: 361 LRPRDRARGGCGCCACH 377
LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377
>gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo
sapiens]
Length = 377
Score = 761 bits (1966), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
Query: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
Query: 361 LRPRDRARGGCGCCACH 377
LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377
>gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 761 bits (1966), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA
Sbjct: 1 MELPGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEA 60
Query: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV
Sbjct: 61 IKDRTGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLV 120
Query: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV
Sbjct: 121 ARPEREVVAEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFLSGGHFSQVAVV 180
Query: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC
Sbjct: 181 VPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTDHLNLLLIAVCRC 240
Query: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG
Sbjct: 241 LLLNATDDPPGRAACPHNVLVGHRQKVSFLIRQWLIQLYTHVLHGRGHVVVALRLLGQPG 300
Query: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE
Sbjct: 301 FLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLE 360
Query: 361 LRPRDRARGGCGCCACH 377
LRPRDRARGGCGCCACH
Sbjct: 361 LRPRDRARGGCGCCACH 377
>gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 35.4 bits (80), Expect = 0.085
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
Query: 229 H 229
H
Sbjct: 165 H 165
>gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo
sapiens]
Length = 201
Score = 35.4 bits (80), Expect = 0.085
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
Query: 229 H 229
H
Sbjct: 165 H 165
>gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
sapiens]
Length = 201
Score = 35.4 bits (80), Expect = 0.085
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 113 AAIVVLLVARPEREVVAEELHDERGVLVGVLVEGVKLGDG---VVERGLLGGLHHRRPFL 169
A +VVLL+ P E H G + G VEG+K G V G+ GGL + L
Sbjct: 50 AGLVVLLLGDPHLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIEGGLGEQGGVL 109
Query: 170 SGGHFSQVAV-VVPFHLQVEHFALVLGLAAILDQVVIQQAQHILAHSLQLLLYLLPVRTD 228
G H V VVP L V + +G A+LD+ V+Q LA SL + + TD
Sbjct: 110 LGSHAKLVVEGVVPDLLHV----IPVGDDAVLDR-VLQGQDTSLALSLVAHVGIFLTHTD 164
Query: 229 H 229
H
Sbjct: 165 H 165
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
L+ A G R GR +G GR GE E AA AAAARR+ LR
Sbjct: 2588 LQDARRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 2639
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
L+ A G R GR +G GR GE E AA AAAARR+ LR
Sbjct: 3122 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 3173
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
L+ A G R GR +G GR GE E AA AAAARR+ LR
Sbjct: 3656 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 3707
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
L+ A G R GR +G GR GE E AA AAAARR+ LR
Sbjct: 4724 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQTLR 4775
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/52 (40%), Positives = 24/52 (46%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELR 362
L+ A G R GR +G GR GE E AA AAARR+ LR
Sbjct: 4190 LQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAATAAARRQEQTLR 4241
>gi|169217271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 69 FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
FL GKV PP P P R P K T V + A A S ++ V +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192
Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
A LH G + G+ ++ GD + G+ + FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228
>gi|89061101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 69 FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
FL GKV PP P P R P K T V + A A S ++ V +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192
Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
A LH G + G+ ++ GD + G+ + FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228
>gi|41151642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 69 FLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIVAFAAIVVLLVARPEREVV 128
FL GKV PP P P R P K T V + A A S ++ V +P +E +
Sbjct: 143 FLCGKV-PPAPPPPRTPRTPPKPPTGVTSQAVATESSSSVDVDL---------QPFQEAI 192
Query: 129 AEELHDERGVLVGVLVEGVKLGDGVVERGLLGGLHHRRPFL 169
A LH G + G+ ++ GD + G+ + FL
Sbjct: 193 A--LHGLSGAMAGI---SMRSGDSPQDSGVASSGRRKTSFL 228
>gi|11559923 eukaryotic translation initiation factor 4H isoform 1
[Homo sapiens]
Length = 248
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/54 (37%), Positives = 24/54 (44%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPR 364
L G G R R G P G RD P G + E A+R RL+L+PR
Sbjct: 163 LGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPR 216
>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
[Homo sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/54 (37%), Positives = 24/54 (44%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPR 364
L G G R R G P G RD P G + E A+R RL+L+PR
Sbjct: 143 LGGRGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPR 196
>gi|4507147 acyl-CoA:cholesterol acyltransferase 2 [Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 0.55
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 23 LEEAIPGKASFRAGKGRQG-------------------TYCKSPQVGW-YFGKNVKEAIK 62
L EA+PG R G+G Q TY ++P V W Y KN +A+
Sbjct: 247 LREAVPGTLRARRGEGIQAPSFSSYLYFLFCPTLIYRETYPRTPYVRWNYVAKNFAQALG 306
Query: 63 DRTGRGFLPGKV-IPPFPSPTRPPTHGKKIKTAVVASACAASSPG---ALIVAFA 113
F+ G++ +P F + +R P + A+V S A+ PG L++ FA
Sbjct: 307 CVLYACFILGRLCVPVFANMSREPFSTR----ALVLSILHATLPGIFMLLLIFFA 357
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 31.2 bits (69), Expect = 1.6
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 294 RLLGQPGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGED----------- 342
RL +P F + HHL + RRR GRP+G G P A E
Sbjct: 1206 RLTRRPSF-----SSHHLMPCDTLARRRLARGRPDGEGAGRGGPRAPEPPGSASSSSQES 1260
Query: 343 -RPTERAAEAAAARRRRLELRPRDRA 367
RP A + +R L LR R A
Sbjct: 1261 LRPPAAALASRPSRMEALRLRLRGTA 1286
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 31.2 bits (69), Expect = 1.6
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGE---------DRPTERAAEAAAARRRRL-- 359
L G +GR R RT G G GR W P AG P EAAA R R+
Sbjct: 438 LAGQRAGRARART-GSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLL 496
Query: 360 -ELRPRDRAR 368
EL D AR
Sbjct: 497 PELPAVDPAR 506
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 31.2 bits (69), Expect = 1.6
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 311 LRGAGSGRRRRRTLGRPEGLGGRDWSPSAGE---------DRPTERAAEAAAARRRRL-- 359
L G +GR R RT G G GR W P AG P EAAA R R+
Sbjct: 438 LAGQRAGRARART-GSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLL 496
Query: 360 -ELRPRDRAR 368
EL D AR
Sbjct: 497 PELPAVDPAR 506
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 317 GRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRRLELRPRDRAR 368
GR R T R SPS GE+RP + ++A + R R+RA+
Sbjct: 1014 GRTRSGTRSESRDRSSRSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAK 1065
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 30.8 bits (68), Expect = 2.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 299 PGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAAR 355
P +L + HH +G+ GR + G G RD+ S+G + ++ A+++R
Sbjct: 568 PSWLENMAYEHHYKGSSRGRSKSSRFSG--GFGARDYRQSSGASSSSFSSSRASSSR 622
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 30.8 bits (68), Expect = 2.1
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 5 GGLEAG----VAGLEDAVGVRGLEEAI----PGKASFRAGKGRQGTYCKSPQVGWYFGKN 56
GGL A V GL GLE PG G+ T SP+ G G N
Sbjct: 561 GGLSAATGVTVPGLGTGTAALGLENFTLSPSPGYPQGTPAAGQAWTPEPSPRRG---GSN 617
Query: 57 VKEAIKDRTGRGF---LPGKVI---PPFPSPTRPPT 86
V ++ TG+G L G I P +PSPT PT
Sbjct: 618 VVGYDRNNTGKGVEQELQGNSIMEPPSWPSPTEDPT 653
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 66 GRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIV---AFAAIVVLLVA- 121
G GF P IP + P HG A+ ++A AA++ G + + A A VLLV+
Sbjct: 303 GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSN 362
Query: 122 -RPER 125
PER
Sbjct: 363 LNPER 367
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 66 GRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPGALIV---AFAAIVVLLVA- 121
G GF P IP + P HG A+ ++A AA++ G + + A A VLLV+
Sbjct: 310 GAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSN 369
Query: 122 -RPER 125
PER
Sbjct: 370 LNPER 374
>gi|102468717 mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 30.4 bits (67), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 46 SPQVGWYFGKNVKEAIKDRTGRGFLPGKVIPPFPSPTRPPT 86
+PQ FG A +G G LP P FP+P P T
Sbjct: 977 TPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRT 1017
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 10 GVAGLEDAVGVRGL----EEAIPGKASFRAGKGRQG 41
GV G++ G+ G+ ++ IPG+ F GKG QG
Sbjct: 302 GVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQG 337
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 10 GVAGLEDAVGVRGL----EEAIPGKASFRAGKGRQG 41
GV G++ G+ G+ ++ IPG+ F GKG QG
Sbjct: 302 GVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQG 337
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 4 PGGLEAGVAGLEDAVGVRGLEEAIPGKASFRAGKGRQG 41
PG L A + GV+G EEA PG A AG+ R G
Sbjct: 323 PGELAWDAAEEAEVPGVKGSEEAAPGDARADAGEDRVG 360
>gi|106507204 hypothetical protein LOC653319 [Homo sapiens]
Length = 471
Score = 30.0 bits (66), Expect = 3.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 295 LLGQPGFLHQLLAVHHLRGAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAA 354
LLG G + + + + + +GRR R TLGRP GR +P G RP A
Sbjct: 70 LLGHRGHMRRSESTYSVNS--TGRRGRGTLGRPP--PGRGRNPGGGTLRPAASLPHIAKT 125
Query: 355 RR 356
+R
Sbjct: 126 QR 127
>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
Length = 381
Score = 30.0 bits (66), Expect = 3.6
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 22 GLEEAIPGKASFRAGKGRQGTYCKSPQVGWYFGKNVKEAIKDRTGRGFLPGKV--IPPFP 79
G +E+ G A K R T S GW N + + G+LPG P P
Sbjct: 4 GEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSPQAP 63
Query: 80 SPTRPPTHGKKIKTA 94
P PPT +K ++A
Sbjct: 64 KPITPPTSHQKAQSA 78
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.6 bits (65), Expect = 4.6
Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 10 GVAGLEDAVGVRGLEEAIPGKASFRAGKGRQGTYCKSPQVG-----WYFGKNVKEAIKDR 64
G G A G RG PG F GR G S G GK + +
Sbjct: 854 GNVGAPGAKGARG-SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Query: 65 TGRGFLPGKVIPPFPSPTRPPTHGKKIKTAVVASACAASSPG 106
TG PG+V PP P P G+K A A +PG
Sbjct: 913 TGPAGRPGEVGPPGP----PGPAGEKGSPGADGPAGAPGTPG 950
>gi|239757543 PREDICTED: similar to eukaryotic translation
elongation factor 1 alpha 2 [Homo sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 4.6
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 46 SPQVGWYFGKNVKEAIKDRTGRGFLPGKVIPPFPS-PTRP--PTHGKKIKTAVVASACAA 102
SP + W+ G V+ + +G P P PS PT P P I T V
Sbjct: 205 SPNMPWFKGWKVERKEGNASGXRLCPRISCPSIPSGPTFPSHPLPSAGIGTVPVGRVETG 264
Query: 103 SSPGALIVAFAAIVVLLVARPEREVVAEELHDER------GVLVGVLVEGVKLGDGVVER 156
++V FA + + EV + E+H E G VG V+ V + D + R
Sbjct: 265 ILRPGMVVTFAPVNI------TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD--IRR 316
Query: 157 GLLGGLHHRRPFLSGGHFSQVAVVV 181
G + G P F+ +++
Sbjct: 317 GNVCGDSKSDPPQEAAQFTSQVIIL 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,507,045
Number of Sequences: 37866
Number of extensions: 841981
Number of successful extensions: 3126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3095
Number of HSP's gapped (non-prelim): 65
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.