Guide to the Human Genome
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Name: LOC100288545 Sequence: fasta or formatted (201aa) NCBI GI: 239741490
Description:

PREDICTED: hypothetical protein XP_002342214

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         17           2
 C cysteine            1.0          2           1
 D aspartate           6.5         13           2
 E glutamate           5.5         11           1
 F phenylalanine       1.0          2           1
 G glycine            15.9         32           3
 H histidine           6.5         13           1
 I isoleucine          2.5          5           1
 K lysine              3.0          6           2
 L leucine            15.9         32           3
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline             5.0         10           2
 Q glutamine           2.5          5           1
 R arginine            5.0         10           2
 S serine              3.5          7           1
 T threonine           5.0         10           2
 V valine             11.4         23           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342214 
LOC100289822          1.000   PREDICTED: hypothetical protein XP_002347911 
LOC100293537          0.990   PREDICTED: hypothetical protein 
LOC100291802          0.351   PREDICTED: hypothetical protein XP_002346199 
LOC100291215          0.351   PREDICTED: hypothetical protein XP_002347079 
LOC100287684          0.351   PREDICTED: hypothetical protein XP_002342945 
LOC100293650          0.026   PREDICTED: hypothetical protein 
LOC100290789          0.026   PREDICTED: hypothetical protein XP_002346935 
LOC100289506          0.026   PREDICTED: hypothetical protein XP_002342811 
LOC100289506          0.026   PREDICTED: hypothetical protein 
ATP5C1                0.013   ATP synthase, H+ transporting, mitochondrial F1 comp...
ATP5C1                0.013   ATP synthase, H+ transporting, mitochondrial F1 compl...
COLEC10               0.008   collectin sub-family member 10 
ACTBL3                0.005   PREDICTED: actin, beta-like 3 
ACTBL3                0.005   PREDICTED: actin, beta-like 3 
ACTBL3                0.005   PREDICTED: kappa-actin 
PCF11                 0.005   pre-mRNA cleavage complex II protein Pcf11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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