Guide to the Human Genome
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Name: LOC389895 Sequence: fasta or formatted (273aa) NCBI GI: 89061101
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {273aa} PREDICTED: hypothetical protein
alt mRNA {273aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         25           3
 C cysteine            1.5          4           1
 D aspartate           5.9         16           2
 E glutamate           8.8         24           2
 F phenylalanine       2.9          8           1
 G glycine             7.0         19           2
 H histidine           2.2          6           1
 I isoleucine          3.3          9           1
 K lysine              5.5         15           2
 L leucine             8.1         22           1
 M methionine          2.2          6           1
 N asparagine          1.1          3           1
 P proline             6.6         18           4
 Q glutamine           8.1         22           3
 R arginine            5.9         16           2
 S serine             10.3         28           4
 T threonine           4.0         11           1
 V valine              5.1         14           1
 W tryptophan          1.8          5           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC389895             1.000   PREDICTED: hypothetical protein 
LOC389895             1.000   PREDICTED: hypothetical protein 
C16orf72              0.638   hypothetical protein LOC29035 
SHANK1                0.027   SH3 and multiple ankyrin repeat domains 1 
EVL                   0.027   Enah/Vasp-like 
ENAH                  0.025   enabled homolog isoform a 
ENAH                  0.025   enabled homolog isoform b 
LOC100129566          0.021   PREDICTED: hypothetical protein LOC100129566 
FLJ20021              0.021   PREDICTED: hypothetical protein 
LOC100129566          0.021   PREDICTED: hypothetical protein LOC100129566 
FLJ20021              0.021   PREDICTED: hypothetical protein 
LOC100129566          0.021   PREDICTED: hypothetical protein LOC100129566 
FLJ20021              0.021   PREDICTED: hypothetical protein 
ZFHX3                 0.021   AT-binding transcription factor 1 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
LOC100291797          0.019   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.019   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.019   PREDICTED: hypothetical protein XP_002342316 
GOLGB1                0.019   golgi autoantigen, golgin subfamily b, macrogolgin ...
HOXB2                 0.019   homeobox B2 
LOC100293650          0.019   PREDICTED: hypothetical protein 
LOC100290789          0.019   PREDICTED: hypothetical protein XP_002346935 
LOC100289506          0.019   PREDICTED: hypothetical protein XP_002342811 
LOC100289506          0.019   PREDICTED: hypothetical protein 
FNBP4                 0.019   formin binding protein 4 
WASF2                 0.017   WAS protein family, member 2 
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 1...
WIPF3                 0.017   WAS/WASL interacting protein family, member 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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