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Search of human proteins with 239048905
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
(652 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239048905 checkpoint with forkhead and ring finger domains is... 1360 0.0
gi|239048792 checkpoint with forkhead and ring finger domains is... 1351 0.0
gi|239048862 checkpoint with forkhead and ring finger domains is... 1345 0.0
gi|239048907 checkpoint with forkhead and ring finger domains is... 1223 0.0
gi|239048909 checkpoint with forkhead and ring finger domains is... 1098 0.0
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 54 5e-07
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 52 2e-06
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 51 4e-06
gi|31742478 ring finger protein 3 [Homo sapiens] 50 7e-06
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 50 9e-06
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 49 1e-05
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 49 1e-05
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 49 1e-05
gi|109240538 polycomb group ring finger 1 [Homo sapiens] 48 2e-05
gi|57165361 ring finger protein 165 [Homo sapiens] 47 6e-05
gi|30520320 ring finger protein 166 [Homo sapiens] 47 6e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 47 7e-05
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 47 7e-05
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 46 9e-05
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 46 9e-05
gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens] 46 9e-05
gi|19923717 deltex 3-like [Homo sapiens] 46 9e-05
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 46 9e-05
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 46 9e-05
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 46 1e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 46 1e-04
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 46 1e-04
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 46 1e-04
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 46 1e-04
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 46 1e-04
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 1360 bits (3520), Expect = 0.0
Identities = 652/652 (100%), Positives = 652/652 (100%)
Query: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
Sbjct: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
Query: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
Sbjct: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
Query: 121 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS 180
ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS
Sbjct: 121 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS 180
Query: 181 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED 240
TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
Sbjct: 181 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED 240
Query: 241 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 300
LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
Sbjct: 241 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 300
Query: 301 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 360
DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
Sbjct: 301 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 360
Query: 361 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 420
EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
Sbjct: 361 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 420
Query: 421 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 480
EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
Sbjct: 421 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 480
Query: 481 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 540
PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
Sbjct: 481 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 540
Query: 541 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 600
NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
Sbjct: 541 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 600
Query: 601 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 652
TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
Sbjct: 601 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 652
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 1351 bits (3497), Expect = 0.0
Identities = 652/664 (98%), Positives = 652/664 (98%), Gaps = 12/664 (1%)
Query: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
Sbjct: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
Query: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
Sbjct: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
Query: 121 ESLSEKQGMTQESF------------DTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS 168
ESLSEKQGMTQESF DTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS
Sbjct: 121 ESLSEKQGMTQESFEANKENVFHGTKDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS 180
Query: 169 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA 228
TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA
Sbjct: 181 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA 240
Query: 229 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE 288
SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE
Sbjct: 241 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE 300
Query: 289 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE 348
TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE
Sbjct: 301 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE 360
Query: 349 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD 408
AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD
Sbjct: 361 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD 420
Query: 409 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG 468
ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG
Sbjct: 421 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG 480
Query: 469 SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN 528
SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN
Sbjct: 481 SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN 540
Query: 529 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL 588
LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL
Sbjct: 541 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL 600
Query: 589 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT 648
CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT
Sbjct: 601 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT 660
Query: 649 RFKN 652
RFKN
Sbjct: 661 RFKN 664
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 1345 bits (3481), Expect = 0.0
Identities = 651/664 (98%), Positives = 651/664 (98%), Gaps = 13/664 (1%)
Query: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
Sbjct: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
Query: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
Sbjct: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
Query: 121 ESLSEKQGMTQESF------------DTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS 168
ESLSEKQGMTQESF DTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS
Sbjct: 121 ESLSEKQGMTQESFEANKENVFHGTKDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTS 180
Query: 169 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA 228
TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA
Sbjct: 181 TSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTA 240
Query: 229 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE 288
SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE
Sbjct: 241 SFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEE 300
Query: 289 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE 348
TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE
Sbjct: 301 TLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVE 360
Query: 349 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD 408
AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD
Sbjct: 361 AYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSD 420
Query: 409 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQG 468
ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTT VQDYVCPLQG
Sbjct: 421 ISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTT-VQDYVCPLQG 479
Query: 469 SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN 528
SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN
Sbjct: 480 SHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN 539
Query: 529 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL 588
LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL
Sbjct: 540 LGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVL 599
Query: 589 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT 648
CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT
Sbjct: 600 CYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQT 659
Query: 649 RFKN 652
RFKN
Sbjct: 660 RFKN 663
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 1223 bits (3165), Expect = 0.0
Identities = 596/652 (91%), Positives = 603/652 (92%), Gaps = 29/652 (4%)
Query: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
Sbjct: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
Query: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY
Sbjct: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
Query: 121 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS 180
ESLSEKQGMTQESF+ + + S P P+ ++ + T
Sbjct: 121 ESLSEKQGMTQESFEMVPCCVAQAGLKLLGSSDP----------PTLASQSIVIT----- 165
Query: 181 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED 240
GSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED
Sbjct: 166 --------------GSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED 211
Query: 241 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 300
LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
Sbjct: 212 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 271
Query: 301 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 360
DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
Sbjct: 272 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 331
Query: 361 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 420
EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
Sbjct: 332 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 391
Query: 421 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 480
EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
Sbjct: 392 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 451
Query: 481 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 540
PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
Sbjct: 452 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 511
Query: 541 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 600
NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
Sbjct: 512 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 571
Query: 601 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 652
TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
Sbjct: 572 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 623
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 1098 bits (2840), Expect = 0.0
Identities = 545/652 (83%), Positives = 547/652 (83%), Gaps = 80/652 (12%)
Query: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH
Sbjct: 1 MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDH 60
Query: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 120
CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEH
Sbjct: 61 CRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHR----- 115
Query: 121 ESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASS 180
SG G + P V +E S TAS SS
Sbjct: 116 ----------------SGGGG-------ISPKGSGPSVASDEVSSFASALPDRKTASFSS 152
Query: 181 TEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQED 240
EP QDQED
Sbjct: 153 LEP----------------------------------------------------QDQED 160
Query: 241 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 300
LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH
Sbjct: 161 LEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLH 220
Query: 301 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 360
DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS
Sbjct: 221 DCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRS 280
Query: 361 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 420
EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP
Sbjct: 281 EEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQCP 340
Query: 421 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 480
EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM
Sbjct: 341 EYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTTAVQDYVCPLQGSHALCTCCFQPM 400
Query: 481 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 540
PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN
Sbjct: 401 PDRRAEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNN 460
Query: 541 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 600
NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL
Sbjct: 461 NSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFREL 520
Query: 601 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 652
TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN
Sbjct: 521 TYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFKN 572
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 260 LLVAQPRRNAQTVHEDVRAAAGKP-------DKMEETLTCIICQDLLHDCVSLQPCMHTF 312
++ A+ + QT E + A K D +E L CIIC + + V+L C H+F
Sbjct: 364 IIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLN-CAHSF 422
Query: 313 CAACYSGWMERSSLCPTCRCPVERICKNHILNNLV 347
C+ C + WM+R CP CR ++ + +L+N +
Sbjct: 423 CSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 457
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMER-SSLCPTCRCP 333
+EE LTC IC L D V+L PC H FC AC W +R CP CR P
Sbjct: 6 LEEKLTCAICLGLYQDPVTL-PCGHNFCGACIRDWWDRCGKACPECREP 53
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens]
Length = 493
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 281 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSG-W-MERSSLCPTC--RCPVER 336
G +E L C +C D D V+L+ C H FC C S W ++ S CP C R
Sbjct: 10 GPSRSFKEELLCAVCYDPFRDAVTLR-CGHNFCRGCVSRCWEVQVSPTCPVCKDRASPAD 68
Query: 337 ICKNHILNNLVEAYLIQHPDKSR 359
+ NH LNNLVE L + + +R
Sbjct: 69 LRTNHTLNNLVEKLLREEAEGAR 91
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 50.1 bits (118), Expect = 7e-06
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 290 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVER 336
+TC +C L D ++ C+HTFC +C ++E ++ CPTCR + +
Sbjct: 15 ITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQ 61
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 49.7 bits (117), Expect = 9e-06
Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 151 PSSPA-TQVCFEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPS 209
P +P T + + P P D P ++ ++PS ER + K + P
Sbjct: 999 PRAPLMTGIAWALPAP---VGDAVPPSAGLRSDPSIMNWERITD--------RLKTAFPQ 1047
Query: 210 VASDEVSSFASALPDRKTASFSSLEPQD-----QEDLEPVKKKMRGDGDLDLN------- 257
E++ F L D S S L + + ++P K + +G ++N
Sbjct: 1048 QTRKELTDFLRKLKDAYGKSLSELTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHS 1107
Query: 258 -GQLLVAQPRRNAQTVHEDVRAA----AGKPDKMEETLT-CIIC-QDLLHDCVSLQPCMH 310
Q AQP + A A A PD+ EE C+IC ++L + +S+ PC H
Sbjct: 1108 PSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPCAH 1167
Query: 311 TFCAACYSGWMERSSLCPTCRCPV 334
F A C W+ + CPTCR V
Sbjct: 1168 KFHAQCIRPWLMQQGTCPTCRLHV 1191
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 49.3 bits (116), Expect = 1e-05
Identities = 53/254 (20%), Positives = 87/254 (34%), Gaps = 54/254 (21%)
Query: 163 PQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASAL 222
P P S L P +A P+P + C GS P
Sbjct: 25 PPPPVSPPALTPAPAAGEEGPAPLSETGAPGC---------SGSRPPELE---------- 65
Query: 223 PDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGK 282
P+R F + E+LE + +L + H +R G+
Sbjct: 66 PERSLGRFRGRFEDEDEELEEEE-------------ELEEEEEEEEEDMSHFSLRLEGGR 112
Query: 283 PDKMEET------------LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 330
D +E + C IC+ L D ++ C+HTFC +C S+ CP C
Sbjct: 113 QDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 172
Query: 331 RC------PVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRR 384
P+ I + L ++V +I ++ E Q D + ++ +P V +
Sbjct: 173 NIVVHQTQPLYNIRLDRQLQDIVYKLVINLEER----EKKQMHDFYKERGLEVPKPAVPQ 228
Query: 385 SFSDEEGSSEDLLE 398
+G S+ +LE
Sbjct: 229 PVPSSKGRSKKVLE 242
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 48.9 bits (115), Expect = 1e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 287 EETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSL---CPTCRCP-------VER 336
++ L C IC D + C + PC+HTFC C ++ SL CP CR V
Sbjct: 17 KQFLVCSICLDR-YQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSA 75
Query: 337 ICKNHILNNLVEAYLIQHPDKSRSEED 363
+ N +++L+EA + Q PD + ED
Sbjct: 76 LQNNFFISSLMEA-MQQAPDGAHDPED 101
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 48.9 bits (115), Expect = 1e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 287 EETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSL---CPTCRCP-------VER 336
++ L C IC D + C + PC+HTFC C ++ SL CP CR V
Sbjct: 17 KQFLVCSICLDR-YQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSA 75
Query: 337 ICKNHILNNLVEAYLIQHPDKSRSEED 363
+ N +++L+EA + Q PD + ED
Sbjct: 76 LQNNFFISSLMEA-MQQAPDGAHDPED 101
>gi|109240538 polycomb group ring finger 1 [Homo sapiens]
Length = 259
Score = 48.1 bits (113), Expect = 2e-05
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 258 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 308
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
Query: 309 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 360
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
Query: 361 EEDVQSMDARNKITQ 375
E QS +++TQ
Sbjct: 124 REFYQSR-GLDRVTQ 137
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 47.0 bits (110), Expect = 6e-05
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 281 GKPDKMEETLT---CIICQDLLHDCVSLQ--PCMHTFCAACYSGWMERSSLCPTCRCPVE 335
GK D+ EE+ T C IC +L D ++ PCMH F C W+ S CP CR +E
Sbjct: 280 GKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 339
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 47.0 bits (110), Expect = 6e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 280 AGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME-RSSLCPTCRCPVE 335
AG +E TC IC ++ H V++ C HTFC C ++ S LCP CR P +
Sbjct: 21 AGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 46.6 bits (109), Expect = 7e-05
Identities = 61/263 (23%), Positives = 100/263 (38%), Gaps = 34/263 (12%)
Query: 141 AGRGADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGG 200
AG G+ P SS A+ V S+S S P+ + S+ G +++ G GG
Sbjct: 7 AGSGSAGTSPGSSAASSVTSASSSLSSSPSP--PSVAVSAAALVSGGVAQAAGSGGLGGP 64
Query: 201 ISPKGSGPSVASDEVSSFASALPDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQL 260
+ P P+V+ + ++ L A+ S G G +
Sbjct: 65 VRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSS-------SLGSGS---RKRP 114
Query: 261 LVAQPRRNAQTVHEDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGW 320
L+A +ED C IC D++ + + C H+FC C
Sbjct: 115 LLAPLCNGLINSYED----------KSNDFVCPICFDMIEEAY-MTKCGHSFCYKCIHQS 163
Query: 321 MERSSLCPTCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQP 380
+E ++ CP C V+ I +H+ N + LI K R EE +D N +
Sbjct: 164 LEDNNRCPKCNYVVDNI--DHLYPNFLVNELIL-KQKQRFEEKRFKLDHSNGHRWQI--- 217
Query: 381 KVRRSFSDEEGSSEDLLELSDVD 403
F D G+ +D L+L++V+
Sbjct: 218 -----FQDWLGTDQDNLDLANVN 235
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 46.6 bits (109), Expect = 7e-05
Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 44/186 (23%)
Query: 163 PQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFASAL 222
P P S L P +A P+P + C GS P
Sbjct: 25 PPPPVSPPALTPAPAAGEEGPAPLSETGAPGC---------SGSRPPELE---------- 65
Query: 223 PDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDVRAAAGK 282
P+R F + E+LE + +L + H +R G+
Sbjct: 66 PERSLGRFRGRFEDEDEELEEEE-------------ELEEEEEEEEEDMSHFSLRLEGGR 112
Query: 283 PDKMEET------------LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 330
D +E + C IC+ L D ++ C+HTFC +C S+ CP C
Sbjct: 113 QDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 172
Query: 331 RCPVER 336
V +
Sbjct: 173 NIVVHQ 178
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 46.2 bits (108), Expect = 9e-05
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 267 RNAQTVHEDVRAAAGKPDKMEET-LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS 325
RN T++ D P++++ CIIC++ + PC H F +C W +R
Sbjct: 270 RNMNTLYPDAT-----PEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQ 324
Query: 326 LCPTCRCPVER 336
CPTCR V R
Sbjct: 325 TCPTCRMDVLR 335
Score = 30.8 bits (68), Expect = 4.1
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 144 GADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISP 203
G P PP P V P P +S + P +++++ P+G +++ G+ S
Sbjct: 380 GMFPLWPPMGPFPPV----PPPPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASA 435
Query: 204 KGSGPSVASDEVSSFASALP 223
SGP S + A P
Sbjct: 436 TASGPGSGSAPEAGPAPGFP 455
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 46.2 bits (108), Expect = 9e-05
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 267 RNAQTVHEDVRAAAGKPDKMEET-LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS 325
RN T++ D P++++ CIIC++ + PC H F +C W +R
Sbjct: 270 RNMNTLYPDAT-----PEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQ 324
Query: 326 LCPTCRCPVER 336
CPTCR V R
Sbjct: 325 TCPTCRMDVLR 335
Score = 30.0 bits (66), Expect = 7.0
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 144 GADPRVPPSSPATQVCFEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISP 203
G P PP P V P PS+ + P+ SA+ + PS G +++ G+ S
Sbjct: 380 GMFPLWPPMGPFPPV---PPPPSSGEAVAPPSTSAALSRPS--GAATTTAAGTSATAASA 434
Query: 204 KGSGPSVASDEVSSFASALP 223
SGP S + A P
Sbjct: 435 TASGPGSGSAPEAGPAPGFP 454
>gi|187607085 ligand of numb-protein X 1 isoform a [Homo sapiens]
Length = 728
Score = 46.2 bits (108), Expect = 9e-05
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 283 PDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCP-VERICKNH 341
P+++++ L C IC L D + PC HT+C C + ++ CP R P V + CK
Sbjct: 32 PEEVDDDLICHICLQALLDPLDT-PCGHTYCTLCLTNFLVEKDFCPMDRKPLVLQHCKKS 90
Query: 342 --ILNNLVEAYLIQHPDKSRSEEDVQSMD 368
++N L+ L+ P + + +Q D
Sbjct: 91 SILVNKLLNKLLVTCPFREHCTQVLQRCD 119
>gi|19923717 deltex 3-like [Homo sapiens]
Length = 740
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 276 VRAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR 331
V + A + DK E+ + C+IC D + + L C H FCA C + M +CPTC+
Sbjct: 546 VSSEASELDKKEKGI-CVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICPTCQ 600
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 46.2 bits (108), Expect = 9e-05
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 290 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR-----CPVER-ICKNHIL 343
L C +C L ++ V+ PC HTFC C ++ ++ CP C+ C R KN I+
Sbjct: 465 LECALCMRLFYEPVTT-PCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIM 523
Query: 344 NNLVEAYLIQHPDKSRS--EEDVQSMDARNK 372
L+ +L + + R EE+++ + NK
Sbjct: 524 EELIAKFLPEELKERRKLYEEEMEELSNLNK 554
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 230 FSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTV------HEDVRAAAGKP 283
+ L + Q E +++ +R + G+ L P T E AAA
Sbjct: 90 YRQLSERQQLVAEQLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEETGAAAAAAA 149
Query: 284 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 330
++ + C C L D VSL C HTFC C C C
Sbjct: 150 TEVWDGFKCRKCHGFLSDPVSLS-CGHTFCKLCLERGRAADRRCALC 195
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 46.2 bits (108), Expect = 9e-05
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 290 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR-----CPVER-ICKNHIL 343
L C +C L ++ V+ PC HTFC C ++ ++ CP C+ C R KN I+
Sbjct: 424 LECALCMRLFYEPVTT-PCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIM 482
Query: 344 NNLVEAYLIQHPDKSRS--EEDVQSMDARNK 372
L+ +L + + R EE+++ + NK
Sbjct: 483 EELIAKFLPEELKERRKLYEEEMEELSNLNK 513
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 230 FSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTV------HEDVRAAAGKP 283
+ L + Q E +++ +R + G+ L P T E AAA
Sbjct: 90 YRQLSERQQLVAEQLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEETGAAAAAAA 149
Query: 284 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 330
++ + C C L D VSL C HTFC C C C
Sbjct: 150 TEVWDGFKCRKCHGFLSDPVSLS-CGHTFCKLCLERGRAADRRCALC 195
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 40/235 (17%)
Query: 100 GDVIYLVYRKNEPEHNVAYLYESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVC 159
G++ Y +Y ++ E + ++ + + SG G+ G+ SS ++
Sbjct: 414 GELSYFMYSDSDSEPTGSVSNRNMERAESRSGRG--GSGGGSSSGSSSSSSSSSSSSSSS 471
Query: 160 FEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFA 219
PS+S+ +S +S++ E SSS GS G + P V DE S
Sbjct: 472 SSSSSPSSSSGG---ESSETSSDLFEGSNEGSSSSGSSGARREGRHRAP-VTFDESGS-- 525
Query: 220 SALPDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRR-NAQTVHEDVRA 278
LP A F L D + QPR + +
Sbjct: 526 --LPFLSLAQFFLLNEDDDD------------------------QPRGLTKEQIDNLAMR 559
Query: 279 AAGKPDKMEETLTCIICQDLLHDCVSLQ--PCMHTFCAACYSGWMERSSLCPTCR 331
+ G+ D ++ TC +C + L+ PC H + C W+ +S CP CR
Sbjct: 560 SFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 40/235 (17%)
Query: 100 GDVIYLVYRKNEPEHNVAYLYESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVC 159
G++ Y +Y ++ E + ++ + + SG G+ G+ SS ++
Sbjct: 414 GELSYFMYSDSDSEPTGSVSNRNMERAESRSGRG--GSGGGSSSGSSSSSSSSSSSSSSS 471
Query: 160 FEEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSFA 219
PS+S+ +S +S++ E SSS GS G + P V DE S
Sbjct: 472 SSSSSPSSSSGG---ESSETSSDLFEGSNEGSSSSGSSGARREGRHRAP-VTFDESGS-- 525
Query: 220 SALPDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRR-NAQTVHEDVRA 278
LP A F L D + QPR + +
Sbjct: 526 --LPFLSLAQFFLLNEDDDD------------------------QPRGLTKEQIDNLAMR 559
Query: 279 AAGKPDKMEETLTCIICQDLLHDCVSLQ--PCMHTFCAACYSGWMERSSLCPTCR 331
+ G+ D ++ TC +C + L+ PC H + C W+ +S CP CR
Sbjct: 560 SFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME---RSSL-------CPTCR---- 331
+EE LTC IC L D L PC H FC C G +E R+SL CPTCR
Sbjct: 7 LEEDLTCPICCSLFDDPRVL-PCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 65
Query: 332 -CPVERICKNHILNNLVEAY 350
+ + N+ L +VE Y
Sbjct: 66 ATGINSLQVNYSLKGIVEKY 85
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME---RSSL-------CPTCR---- 331
+EE LTC IC L D L PC H FC C G +E R+SL CPTCR
Sbjct: 4 LEEDLTCPICCSLFDDPRVL-PCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 332 -CPVERICKNHILNNLVEAY 350
+ + N+ L +VE Y
Sbjct: 63 ATGINSLQVNYSLKGIVEKY 82
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME---RSSL-------CPTCR---- 331
+EE LTC IC L D L PC H FC C G +E R+SL CPTCR
Sbjct: 4 LEEDLTCPICCSLFDDPRVL-PCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 332 -CPVERICKNHILNNLVEAY 350
+ + N+ L +VE Y
Sbjct: 63 ATGINSLQVNYSLKGIVEKY 82
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 286 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWME---RSSL-------CPTCR---- 331
+EE LTC IC L D L PC H FC C G +E R+SL CPTCR
Sbjct: 4 LEEDLTCPICCSLFDDPRVL-PCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 332 -CPVERICKNHILNNLVEAY 350
+ + N+ L +VE Y
Sbjct: 63 ATGINSLQVNYSLKGIVEKY 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,348,783
Number of Sequences: 37866
Number of extensions: 1566657
Number of successful extensions: 10815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 9906
Number of HSP's gapped (non-prelim): 1234
length of query: 652
length of database: 18,247,518
effective HSP length: 109
effective length of query: 543
effective length of database: 14,120,124
effective search space: 7667227332
effective search space used: 7667227332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.