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Search of human proteins with 238859599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238859599 RNA binding motif protein 34 isoform 2 [Homo
sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens] 445 e-125
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 432 e-121
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 47 1e-05
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 41 0.001
gi|221219020 NYD-SP11 protein [Homo sapiens] 40 0.001
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 40 0.002
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 39 0.003
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 39 0.003
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 39 0.003
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 39 0.003
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 39 0.003
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 39 0.003
gi|19923899 coiled-coil domain containing 45 [Homo sapiens] 39 0.003
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 39 0.003
gi|32483374 nucleolar protein 5A [Homo sapiens] 39 0.005
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 38 0.006
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 38 0.006
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 38 0.008
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 38 0.008
gi|22758136 MAP7 domain containing 2 [Homo sapiens] 38 0.008
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 37 0.010
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 37 0.010
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 37 0.010
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 37 0.010
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 37 0.010
gi|33356550 G patch domain containing 4 isoform 2 [Homo sapiens] 37 0.010
gi|33356552 G patch domain containing 4 isoform 1 [Homo sapiens] 37 0.010
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 37 0.014
>gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens]
Length = 225
Score = 445 bits (1144), Expect = e-125
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLVCFIPP 225
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLVCFIPP
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLVCFIPP 225
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 432 bits (1110), Expect = e-121
Identities = 219/220 (99%), Positives = 220/220 (100%)
Query: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLV 220
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSL+
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLI 220
Score = 35.4 bits (80), Expect = 0.040
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
KK K +E + R S PA+ +KK K D+++ A +EE Q
Sbjct: 199 KKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQ 258
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKK 199
KR G ++AD R ++ + E +++R+VFVGNLP +
Sbjct: 259 ALKRN----GAQIAD------------GFRIRVDLASETSS-RDKRSVFVGNLPYKVEES 301
Query: 200 KLKSFFKEYGQIESVR 215
++ F + G I +VR
Sbjct: 302 AIEKHFLDCGSIMAVR 317
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 47.4 bits (111), Expect = 1e-05
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K+ KK K EE E T + E +E +K K K+K EKK +E+ EEE
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEK 60
Query: 136 HQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQ------RKKIQINQEEERLKNER 185
+K+ +K+K + + + + ++ E+ + +KK + +EEE K +R
Sbjct: 61 KRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKR 116
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 86 EEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQ---- 141
+EEE Q +R +++ K +K KKK EK+ AD + D EEE K+ +
Sbjct: 593 QEEEKAEQRKRARAEK--KALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENS 650
Query: 142 -----KRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERL-----KNERTVFVGN 191
+ +N + A + D E + K + ++ ++ K+ TVFV N
Sbjct: 651 IPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSN 710
Query: 192 LPVTCNK--KKLKSFFKEYGQIESVR 215
LP + + KL+ F+ G++ +R
Sbjct: 711 LPYSMQEPDTKLRPLFEACGEVVQIR 736
Score = 28.1 bits (61), Expect = 6.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVR 215
+F+ LP +C K++L+ K +G ++ +R
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLR 831
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 15/120 (12%)
Query: 74 VPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEE 133
V ++ +K ++ EE+ Q E ++ K+ +A+KK E+KLA E LA +
Sbjct: 1550 VSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQEEEKLA-----Q 1604
Query: 134 EIHQKQGQKRKNSQPGVKVA--DRKILD------DTEDTVVSQRKKIQINQEEERLKNER 185
E Q ++RK +Q VK+ DR++ E+T+ + +K ++QE E+L +R
Sbjct: 1605 EERQLAQEERKLAQAYVKITQDDREMAQAEGKFAQKEETLAQRGEK--LSQEAEKLAQKR 1662
Score = 40.0 bits (92), Expect = 0.002
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 4 EGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLFSSL 63
EG +K + Q GE + +L + + R E G+LA + + L
Sbjct: 1634 EGKFAQKEETLAQRGEKLSQEAEKLAQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNIL 1693
Query: 64 EPQIQPVYVPVPKQTI----KKTKRNEEE-----ESTSQIERPLSQEPAKKVKAKKKHTN 114
+++ + P +Q + K+ + EE E S E L+QE K V+ KKK
Sbjct: 1694 AQKVEEL--PQREQNLDWQEKELAQELEELEWDMEELSWKEEELNQEEGKLVEEKKKLAE 1751
Query: 115 AE-------KKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVS 167
E +KL++ E+ LA EEE+ ++ +K + + + ++ E +
Sbjct: 1752 EEEALAWQREKLSEEETKLAQ---EEELLIQEKEKLAQHKEKMPEEEERLGRKREQLI-- 1806
Query: 168 QRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQ 210
KK+++ Q+ ER N N + KK L K Q
Sbjct: 1807 -EKKMKLAQKRERWINSMEELTKNKMILYQKKNLAQEKKNLAQ 1848
Score = 38.1 bits (87), Expect = 0.006
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K+ ++ K +EEE +Q ER L+QE K +A K T ++++A E A +EE
Sbjct: 1587 KRAQEERKLAQEEEKLAQEERQLAQEERKLAQAYVKITQDDREMAQAEGKFAQ---KEET 1643
Query: 136 HQKQGQKRKNSQPGVKVAD-RKILDDTEDTVVSQRKKI 172
++G+K SQ K+A RK L + V + +K+
Sbjct: 1644 LAQRGEKL--SQEAEKLAQKRKKLAKKWEKVAREEEKL 1679
Score = 37.7 bits (86), Expect = 0.008
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 76 KQTIK-KTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE 134
KQ ++ K K + +Q+E L+QE +K K+K EKKL E +LA +E+
Sbjct: 1872 KQLVQVKNKLGMFNKILAQVEEKLTQEKETVIKKKEKLAETEKKLVQVEDSLAKK--QEK 1929
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER--------T 186
+ Q +K K + V +K L D ++ +N E +RL E+ T
Sbjct: 1930 LAQ---EKMKLALEKAMVQGKKRLRGELDIAKEEK---ALNLEMKRLAEEKMRLVEGKET 1983
Query: 187 VFVGNLPVTCNKKKLKSFFKE 207
+ G P T ++K+ +E
Sbjct: 1984 LSKGETPETSRQRKMTQVEQE 2004
Score = 34.3 bits (77), Expect = 0.088
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKK-----------------LADR 122
++ ++ EEE Q+E+ +E KK K KKK EK+ L+D
Sbjct: 2266 EEERKEEEEGEEKQVEKE-EEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDE 2324
Query: 123 ESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTE 162
E S LEEE+ +++ +K Q ++ RK L E
Sbjct: 2325 EEEEESCSLEEEVDREKEILKKEKQFKLQEQRRKSLRGRE 2364
Score = 33.9 bits (76), Expect = 0.12
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ K +EEE +Q E L QE K + K+K E++L + L +E+++ Q
Sbjct: 1759 QREKLSEEETKLAQEEELLIQEKEKLAQHKEKMPEEEERLGRKREQL----IEKKMKLAQ 1814
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKK 199
++R + ++ IL ++ ++Q KK ++E+ + + + +T +KK
Sbjct: 1815 KRERWINSMEELTKNKMILYQKKN--LAQEKKNLAQEKEKLAQRKENLLYNKERLTHSKK 1872
Query: 200 KLKSFFKEYGQIESV 214
+L + G +
Sbjct: 1873 QLVQVKNKLGMFNKI 1887
Score = 32.3 bits (72), Expect = 0.34
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 40/174 (22%)
Query: 6 MSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLFSSLEP 65
+ +R RKR + RG P++ QV + EH S + SL LE
Sbjct: 2193 LKRRWRKRK--------EAKRGDKPKEKFSSQV-DEVESEEHFSE----EMESLLDELEK 2239
Query: 66 QIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESA 125
Q ++ +EEEE + E +E ++ + +K+ E+K ++E
Sbjct: 2240 Q--------------ESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKE-- 2283
Query: 126 LASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEE 179
+++ +K+K + +V +++ + + ++ ++S+ + ++ EEE
Sbjct: 2284 -----------EEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEE 2326
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/104 (19%), Positives = 46/104 (44%)
Query: 81 KTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQG 140
+++ + EE S ++ QE + +++ E++ + EEE +KQ
Sbjct: 2221 ESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQV 2280
Query: 141 QKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
+K + + K +K ++ V ++++I +E E L +E
Sbjct: 2281 EKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDE 2324
Score = 29.3 bits (64), Expect = 2.8
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 83 KRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQK 142
KR E + E+ SQ +V++++ + + L D S EEE +++ ++
Sbjct: 2199 KRKEAKRGDKPKEKFSSQ--VDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEE 2256
Query: 143 RKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
R+ + + +RK ++ E+ V + ++ + +++E+ K E
Sbjct: 2257 REEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKEKKKEE 2298
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 39.7 bits (91), Expect = 0.002
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 14 SVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHH-SRGGTGRLASLFSSLEPQIQPVYV 72
S QE E+ + PED + V S E+ SRG T L EP +
Sbjct: 707 SAQEDEDIEASNEEENPEDSEVEAVKPSEDSPENATSRGNTEPAVEL----EPTTETAPS 762
Query: 73 PVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKA-KKKHTNAEKKLADRESALA--SA 129
P + TK E+E +Q+ +S E A+++ +++H+ E + D A S
Sbjct: 763 TSPSLAVPSTKPAEDESVETQVNDSISAETAEQMDVDQQEHSAEEGSVCDPPPATKADSV 822
Query: 130 DLEEEIHQKQGQKRKNSQPGVKVADR---KILDDTEDTVVSQRKKIQ 173
D+E + + K + + DR K+ ED VV+Q+ Q
Sbjct: 823 DVEVRVPENHASKVEGDNTKERDLDRASEKVEPRDEDLVVAQQINAQ 869
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADR-ESALASADLEEEIHQK 138
K+ K EE+E + E+ +K+ K++ E+K +R E + E+E +K
Sbjct: 104 KENKEGEEKEKRKKKEKKERGRTSKE--GKERERKEERKREERKERERKKEEREKERERK 161
Query: 139 QGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
+ +KR+ Q G K +RK + E RKK + N++E + + ER
Sbjct: 162 ERKKRERKQVGEKEEERKEKERKE------RKKRERNRKERKKERER 202
Score = 37.0 bits (84), Expect = 0.014
Identities = 24/106 (22%), Positives = 49/106 (46%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
KK +R E+ + + + K+ K ++K E+K RE + +E+ +K+
Sbjct: 60 KKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKE 119
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
++R + K +RK E+ +RKK + +E ER + ++
Sbjct: 120 KKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERKK 165
Score = 36.6 bits (83), Expect = 0.018
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVK-AKKKHTNAEKKLADRESALASADLEEE 134
+++ +K +R E E+ + E+ +E KK K ++K E+K RE + +E+
Sbjct: 55 RESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEK 114
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
+K+ ++R + K +RK E+ +RK+ + +EE + ER
Sbjct: 115 RKKKEKKERGRTSKEGKERERK-----EERKREERKERERKKEEREKERER 160
Score = 33.1 bits (74), Expect = 0.20
Identities = 24/110 (21%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K+ ++ KR E+E+ E+ ++ KK K ++ T+ E K +R+ + +E
Sbjct: 92 KEERERKKRRREKENKEGEEK---EKRKKKEKKERGRTSKEGKERERKEERKREERKERE 148
Query: 136 HQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
+K+ ++++ + K +RK + + E+ + +K + ++ ER + ER
Sbjct: 149 RKKEEREKERERKERKKRERKQVGEKEEERKEKERKER--KKRERNRKER 196
Score = 32.7 bits (73), Expect = 0.26
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K+ K+ + ++E + +R +E +K + KK E+K +RE + E
Sbjct: 49 KEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKE--- 105
Query: 136 HQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
K+G++++ + K + + ++ + +K + +E ER K ER
Sbjct: 106 -NKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEER 154
Score = 31.2 bits (69), Expect = 0.75
Identities = 23/106 (21%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
KK K+ E ++ + ++ ++ K+ + K+K EKK E S + +E +++
Sbjct: 83 KKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKK----ERGRTSKEGKERERKEE 138
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
++ + + K +R+ + ++ +RK++ +EEER + ER
Sbjct: 139 RKREERKERERKKEEREKERERKERKKRERKQVG-EKEEERKEKER 183
Score = 28.9 bits (63), Expect = 3.7
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
K+ +R EE + + ER +E +K + +K+ E+K E+E +K+
Sbjct: 131 KERERKEERKREERKERERKKEEREKERERKERKKRERKQVG----------EKEEERKE 180
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEE---ERLKNERT 186
++++ + +RK + E +RKK + +EE ER K+ +T
Sbjct: 181 KERKERKKRERNRKERK--KERERKERRERKKERKKKEERKKERQKDRQT 228
Score = 28.5 bits (62), Expect = 4.8
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K+ +K + ++EE + ER ++ +K +K+ EK+ +R+ E
Sbjct: 140 KREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKK-------RERN 192
Query: 136 HQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQIN-QEEERLKNER 185
+++ ++R+ + + +RK E+ ++K Q N +E+ER K ER
Sbjct: 193 RKERKKERERKERRERKKERK---KKEERKKERQKDRQTNWREKERGKRER 240
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ + E+EE + E L ++ + + +++ E++L ++E L EE+ +
Sbjct: 197 QEERLREQEERLREQEERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLL 256
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 187
Q+R+ + + ++LD+ E+ + +R + Q++ERL + T+
Sbjct: 257 KQERRQEEQERLLERERLLDEVEELLEQER----LRQQDERLWQQETL 300
Score = 28.5 bits (62), Expect = 4.8
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 9 RKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRG-------GTGRLASL-F 60
+++ + G N V GS P+ A+S G +HS G G GR +S
Sbjct: 34 QRKSPGIPAGANRKKKVNGSSPD------TATS---GGYHSPGDSATGIYGEGRASSTTL 84
Query: 61 SSLEPQIQPVYVPVPK---------QTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKK 111
LE Q Q + V + + I R +EE +I L Q+ + + K
Sbjct: 85 QDLESQYQELAVALDSSSAIISQLTENINSLVRTSKEEKKHEIH--LVQKLGRSLFKLKN 142
Query: 112 HTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKK 171
T + LA + A S E++ + RK + + ++ ++ +++++R++
Sbjct: 143 QT--AEPLAPQPPAGPSK--VEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQE 198
Query: 172 IQINQEEERLKNE 184
++ ++EERL+ +
Sbjct: 199 ERLREQEERLREQ 211
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ + E+EE + E L ++ + + +++ E++L ++E L EE+ +
Sbjct: 197 QEERLREQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLL 256
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 187
Q+R+ + + ++LD+ E+ + +R + Q++ERL + T+
Sbjct: 257 EQERRQEEQERLLERERLLDEVEELLEQER----LRQQDERLWQQETL 300
Score = 28.1 bits (61), Expect = 6.3
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 9 RKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRG-------GTGRLASL-F 60
+++ + G N V GS P+ A+S G +HS G G GR +S
Sbjct: 34 QRKSPGIPAGANRKKKVNGSSPD------TATS---GGYHSPGDSATGIYGEGRASSTTL 84
Query: 61 SSLEPQIQPVYVPVPK---------QTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKK 111
LE Q Q + V + + I R +EE +I L Q+ + + K
Sbjct: 85 QDLESQYQELAVALDSSSAIISQLTENINSLVRTSKEEKKHEIH--LVQKLGRSLFKLKN 142
Query: 112 HTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKK 171
T + LA A S E++ + RK + + ++ ++ +++++R++
Sbjct: 143 QT--AEPLAPEPPAGPSK--VEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQE 198
Query: 172 IQINQEEERLKNE 184
++ ++EERL+ +
Sbjct: 199 ERLREQEERLREQ 211
>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 479
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ + E+EE + E L ++ + + +++ E++L ++E L EE+ +
Sbjct: 232 QEERLREQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLL 291
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 187
Q+R+ + + ++LD+ E+ + +R + Q++ERL + T+
Sbjct: 292 EQERRQEEQERLLERERLLDEVEELLEQER----LRQQDERLWQQETL 335
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 39.3 bits (90), Expect = 0.003
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASAD----- 130
K+ ++ +R +EEE + ER +E K+ +++ E+K A E A A+
Sbjct: 322 KRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRARAEEEEKA 381
Query: 131 -LEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
+EE+ KQ +++K++ K+ K+ E V+++K + + LK +
Sbjct: 382 KVEEQKRNKQLEEKKHAMQETKIKGEKVEQKIEGKWVNEKKAQEDKLQTAVLKKQ 436
Score = 34.7 bits (78), Expect = 0.068
Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 46 EHHSRGGTGRLASLFSSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKK 105
E RG G + +E ++ ++T+ + +N + S + ++ + +
Sbjct: 196 EKPKRGSIGE-----NQVEVMVEEKTTESQEETVVMSLKNGQISSEEPKQEEEREQGSDE 250
Query: 106 VKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTV 165
+ +K +K+ A+ E A A+ E I +Q +K +AD + + E+
Sbjct: 251 ISHHEKMEEEDKERAEAERARLEAEERERIKAEQDKK---------IADERARIEAEEKA 301
Query: 166 VSQRKKIQINQEEERLKNE 184
+Q ++ + +E ER++ E
Sbjct: 302 AAQERERREAEERERMREE 320
Score = 32.3 bits (72), Expect = 0.34
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 83 KRNEEEESTSQIERP---------LSQEPAKKVKAKKKHTNAEKKLADRESALASAD--- 130
K EE++ ++ ER + E KK+ ++ AE+K A +E A+
Sbjct: 256 KMEEEDKERAEAERARLEAEERERIKAEQDKKIADERARIEAEEKAAAQERERREAEERE 315
Query: 131 --LEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
EEE + ++R + +R+ + + E +R++I+ +EE+R ER
Sbjct: 316 RMREEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRIK--EEEKRAAEER 370
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 39.3 bits (90), Expect = 0.003
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 75 PKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE 134
PK IK T + E ++ ++ L + KK ++K + EK A+ ES + E++
Sbjct: 37 PKDDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEE-EKK 95
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQE 177
HQ++ +K++ Q A R+ ++ + + + IQ++QE
Sbjct: 96 KHQEEERKKQEEQ-----AKRQQEEEAAAQMKEKEESIQLHQE 133
Score = 32.0 bits (71), Expect = 0.44
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 74 VPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEE 133
+P + K E++ + E+ S+ + V +K++ + K A +E + A D ++
Sbjct: 1 MPAERKKPASMEEKDSLPNNKEKDCSER--RTVSSKERPKDDIKLTAKKEVSKAPEDKKK 58
Query: 134 EIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
+ + KRK K D + + E++ + ++ + +QEEER K E
Sbjct: 59 RL---EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQE 106
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 39.3 bits (90), Expect = 0.003
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 75 PKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE 134
PK IK T + E ++ ++ L + KK ++K + EK A+ ES + E++
Sbjct: 37 PKDDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEE-EKK 95
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQE 177
HQ++ +K++ Q A R+ ++ + + + IQ++QE
Sbjct: 96 KHQEEERKKQEEQ-----AKRQQEEEAAAQMKEKEESIQLHQE 133
Score = 32.0 bits (71), Expect = 0.44
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 74 VPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEE 133
+P + K E++ + E+ S+ + V +K++ + K A +E + A D ++
Sbjct: 1 MPAERKKPASMEEKDSLPNNKEKDCSER--RTVSSKERPKDDIKLTAKKEVSKAPEDKKK 58
Query: 134 EIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
+ + KRK K D + + E++ + ++ + +QEEER K E
Sbjct: 59 RL---EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQE 106
>gi|19923899 coiled-coil domain containing 45 [Homo sapiens]
Length = 821
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 66 QIQPVYVPVPK-QTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEK---KLAD 121
++ P V P+ + K KRNE + S P Q P K++ ++ H +EK +L++
Sbjct: 322 EVYPAQVQGPRTRKPPKGKRNENRATASSCNSPFPQRPRKRLTEQELHDVSEKLSQRLSE 381
Query: 122 RESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTV 165
+ L SA L + I +K K +N+ + ++ D TE+T+
Sbjct: 382 LDWMLKSA-LGDRIKEKTDHKEENT------GNEEVEDGTEETL 418
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/108 (20%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ + E+EE + E L ++ + + +++ E++L ++E L EE+ +
Sbjct: 197 QEERLREQEERLREQEERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLL 256
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 187
Q+R+ + + ++LD+ E+ + +R + Q++ERL + T+
Sbjct: 257 KQERRQEEQERLLERERLLDEVEELLEQER----LRQQDERLWQQETL 300
Score = 28.5 bits (62), Expect = 4.8
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 9 RKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRG-------GTGRLASL-F 60
+++ + G N V GS P+ A+S G +HS G G GR +S
Sbjct: 34 QRKSPGIPAGANRKKKVNGSSPD------TATS---GGYHSPGDSATGIYGEGRASSTTL 84
Query: 61 SSLEPQIQPVYVPVPK---------QTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKK 111
LE Q Q + V + + I R +EE +I L Q+ + + K
Sbjct: 85 QDLESQYQELAVALDSSSAIISQLTENINSLVRTSKEEKKHEIH--LVQKLGRSLFKLKN 142
Query: 112 HTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKK 171
T + LA + A S E++ + RK + + ++ ++ +++++R++
Sbjct: 143 QT--AEPLAPQPPAGPSK--VEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQE 198
Query: 172 IQINQEEERLKNE 184
++ ++EERL+ +
Sbjct: 199 ERLREQEERLREQ 211
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 38.5 bits (88), Expect = 0.005
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 72 VPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADL 131
+P + K + EE+ ++I R L ++ K++K +KK A LA E++ ++ +
Sbjct: 413 IPRKNLDVMKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRL-AALALASSENSSSTPEE 471
Query: 132 EEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEE 178
EE+ +K K+K Q +V ++D + +KK ++EE
Sbjct: 472 CEEMSEK--PKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEE 516
Score = 33.5 bits (75), Expect = 0.15
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 31/154 (20%)
Query: 76 KQTIKKTKR---------NEEEESTSQIERPLSQEPAKKVKAKKKHTNAE---------- 116
K+ +KK K+ +E ST + +S++P KK K K + E
Sbjct: 444 KKRLKKEKKRLAALALASSENSSSTPEECEEMSEKPKKKKKQKPQEVPQENGMEDPSISF 503
Query: 117 ----KKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKI 172
KK + + L S+DLEE KRK S P + + D E S KK
Sbjct: 504 SKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTP----KEETVNDPEEAGHRSGSKKK 559
Query: 173 QINQEEERLKNERTVFVGNLPVTCNKKKLKSFFK 206
+ +EE + + VG + KK K F K
Sbjct: 560 RKFSKEEPVSSGPEEAVGK----SSSKKKKKFHK 589
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 38.1 bits (87), Expect = 0.006
Identities = 25/133 (18%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 55 RLASLFSSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTN 114
RL L Q + ++ + ++ + E+EE + E L ++ + + +++
Sbjct: 263 RLCEQEERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLREQEERLCEQEERLRE 322
Query: 115 AEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQI 174
E++L ++E L EE+ + Q+R+ + + ++L++ E+ + +R +
Sbjct: 323 QEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLERERLLEEVEELLEQER----L 378
Query: 175 NQEEERLKNERTV 187
Q++ERL + T+
Sbjct: 379 RQQDERLWQQETL 391
Score = 27.7 bits (60), Expect = 8.3
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 9 RKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRG-------GTGRLASL-F 60
+++ + G N + GS P+ A+S G +HS G G GR +S
Sbjct: 34 QRKSPGIPAGANRKKKINGSSPD------TATS---GGYHSPGDSATGIYGEGRASSTTL 84
Query: 61 SSLEPQIQPVYVPVPK---------QTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKK 111
LE Q Q + V + + I R +EE +I L Q+ + + K
Sbjct: 85 EDLESQYQELAVALDSSSAIISQLTENINSLVRTSKEEKKHEIH--LVQKLGRSLFKLKN 142
Query: 112 HTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKK 171
T + LA A S E++ + RK + + ++ ++ +++++R++
Sbjct: 143 QT--AEPLAPEPPAGPSK--VEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQE 198
Query: 172 IQINQEEERLKNE 184
++ ++EERL+ +
Sbjct: 199 ERLREQEERLREQ 211
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 38.1 bits (87), Expect = 0.006
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 64 EPQIQPVYVPV-------PKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAE 116
+P+ +P PV P+ +++T + ++S+S ++Q + ++ +
Sbjct: 197 DPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTS 256
Query: 117 KKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTED-----TVVSQRKK 171
K L + + + Q R S+P ++ ++ D + QR
Sbjct: 257 KNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGP 316
Query: 172 IQINQEEE----------RLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRS 218
I + E R + +F+GNLP +K +LK FF+ YG + +R S
Sbjct: 317 RPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINS 373
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 38.1 bits (87), Expect = 0.006
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 64 EPQIQPVYVPV-------PKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAE 116
+P+ +P PV P+ +++T + ++S+S ++Q + ++ +
Sbjct: 197 DPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTS 256
Query: 117 KKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTED-----TVVSQRKK 171
K L + + + Q R S+P ++ ++ D + QR
Sbjct: 257 KNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGP 316
Query: 172 IQINQEEE----------RLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRS 218
I + E R + +F+GNLP +K +LK FF+ YG + +R S
Sbjct: 317 RPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINS 373
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/110 (21%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ K E+EE + E + ++ K + ++K EKK+ ++E + +EE+ Q+Q
Sbjct: 409 QEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEKKIREQEEKIRE---QEEMMQEQ 465
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKI-----QINQEEERLKNE 184
+++ Q G + + E+ + Q +KI +I ++EE+++ +
Sbjct: 466 -EEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQ 514
Score = 34.3 bits (77), Expect = 0.088
Identities = 25/160 (15%), Positives = 72/160 (45%), Gaps = 8/160 (5%)
Query: 31 EDYRLGQVASSLFRGEHHSRGGTGRLASLFSSLEPQIQPVYVPVPKQTIKKTKRNEEEES 90
++ ++G+ ++ E + ++ + Q + + K ++ E+EE
Sbjct: 409 QEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEK 468
Query: 91 TSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASAD----LEEEIHQKQGQKRKNS 146
+ E + ++ AK + ++K E+K+ ++E + + +EE+ Q+Q +K
Sbjct: 469 MGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQ 528
Query: 147 QPGVKVADRKILDDTEDTVVSQRK----KIQINQEEERLK 182
+ + + K+ + E + K ++++ Q+EE+++
Sbjct: 529 EEKMCEQEEKMQEQEEKMRRQEEKMREQEVRLRQQEEKMQ 568
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/106 (19%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
++ K E+EE + E + ++ K + + K E+K+ +E + +E+ ++Q
Sbjct: 451 QEEKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIRE---QEKKIREQ 507
Query: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNER 185
+K + + ++ + K+ + E+ + Q +K+Q +E+ R + E+
Sbjct: 508 EEKIREQEEMMQEQEEKMWEQ-EEKMCEQEEKMQEQEEKMRRQEEK 552
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
K + +++++E + + +++R L + K+ ++ AE +E SA L+ ++
Sbjct: 217 KLQLVESEKSEIQLNVKELKRKLERA---KLLLPQQQLQAEADHLGKELQSVSAKLQAQV 273
Query: 136 HQKQGQKRKNSQPGVKV-ADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVF 188
+ + R N Q K+ + + + E+ + Q +KI+ QEE+ + E ++
Sbjct: 274 EENELWNRLNQQQEEKMWRQEEKIQEREEKIQEQEEKIR-EQEEKMRRQEEMMW 326
Score = 29.6 bits (65), Expect = 2.2
Identities = 29/150 (19%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 64 EPQIQPVYVPVPKQTIKKTKRNE---EEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
E +IQ + +Q K ++ E E+E + + + E +K++ ++ + ++K+
Sbjct: 301 EEKIQEQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIR 360
Query: 121 DRESALASADL--EEEIHQKQGQKRKNSQPGVKVADRKI------LDDTEDTVVSQRKKI 172
++E + E+E Q+Q K + ++ + KI + + E+ + Q +K+
Sbjct: 361 EQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKM 420
Query: 173 QINQEEERLKNERTVFVGNLPVTCNKKKLK 202
QEEE + E + + +KK++
Sbjct: 421 W-EQEEEMQEQEEKMRRQEEKIREQEKKIR 449
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 99 SQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQ-PGVKVADRKI 157
S++ +K K KKK + + +S+ +S+D E+E +KQG++RK + K +
Sbjct: 88 SKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDE-EKKQGKRRKKKKNRSYKSSQSST 146
Query: 158 LDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSF 204
+ ++ S +KK + E E+ K+ R++ +KK+ KS+
Sbjct: 147 HESESESKESVKKKKKSKDETEKEKDVRSL---------SKKRKKSY 184
>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
Length = 732
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAKK--VKAKKKHTNAEKKLADRESALASADLEEEIHQ 137
++ KR EEE E QE +K + KKK EK+ A E A EEE+
Sbjct: 434 EELKRKAEEERLRLEEEARKQEEERKRQEEEKKKQEGEEKRKAGEE---AKRKAEEELLL 490
Query: 138 KQGQKRKNSQPGVKVADRKILDDTEDTVVSQ----RKKIQINQEEERLKNERTV 187
K+ Q+++ + + ++ + V Q R++I + E+ERL+ ++ +
Sbjct: 491 KEKQEQEKQEKAMIEKQKEAAETKAREVAEQMRLEREQIMLQIEQERLERKKRI 544
Score = 36.2 bits (82), Expect = 0.023
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 74 VPKQTIKKTKRNEEEEST--SQIERPLSQEPAKK----VKAKKKHTNAEKKLADRESAL- 126
+PK+ +K K N+E E T Q P +E +K A +KH A A+ +AL
Sbjct: 329 MPKRKAEKEKSNKEREGTLAQQAAGPQGEEALEKHVVDKHASEKHAAAAGGKAENSAALG 388
Query: 127 -----------ASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQIN 175
A+ L E+ Q + QK + Q V+ ++ L+ E ++ +++++
Sbjct: 389 KPTAGTTDAGEAAKILAEKRRQARLQKEQEEQERVEKEEQDRLEREELKRKAEEERLRLE 448
Query: 176 QEEERLKNER 185
+E + + ER
Sbjct: 449 EEARKQEEER 458
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/82 (24%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 106 VKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGV-----KVADRKILDD 160
+K+ ++ A+++ +RE LA+ E++I +KQ + R + + K+ +++ +D
Sbjct: 49 LKSDERQRLAKERREEREKCLAAR--EQQILEKQKRARLQYEKQMEERWRKLEEQRQRED 106
Query: 161 TEDTVVSQRKKIQINQEEERLK 182
+ V +++K ++ +EEERL+
Sbjct: 107 QKRAAVEEKRKQKLREEEERLE 128
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 37.4 bits (85), Expect = 0.010
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 2 ALEGMSKRKRKR--------SVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGT 53
ALE S++++ R S+Q E+PDD G + + A++ F+ H
Sbjct: 152 ALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDG-----FSMKHTATARFQRNH------ 200
Query: 54 GRLAS--LFSSLEPQIQPVYVPVPKQTIKK------TKRNEEEESTSQIERPLSQEPAKK 105
RL S L S+ P ++ V Q +K+ + + E QIE ++ K
Sbjct: 201 -RLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKF 259
Query: 106 VKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTV 165
+++ N K+L + + + EI Q + Q RK + K A + + ++ ++
Sbjct: 260 LESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQ-AERSQSSI 318
Query: 166 VSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLK 202
V + ++ N+ EE+ +E N+P+ + L+
Sbjct: 319 VPEEEQ-AANKGEEKKDDE------NIPMETEETHLE 348
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 37.4 bits (85), Expect = 0.010
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 67 IQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESAL 126
+Q Y + KK K+ E+ES ++ E SQE ++ + ++K + K D
Sbjct: 649 VQYAYFKKVLEKEKKRKKRSEDESETEDEEEKSQEDQEQKRKRRKTRQPDAKDGDSYDPY 708
Query: 127 ASADLEEEIHQKQGQKRKNSQ 147
+D EEE+ Q K +SQ
Sbjct: 709 DFSDTEEEMPQVHTPKTADSQ 729
Score = 30.8 bits (68), Expect = 0.98
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 41 SLFRGEHHSRGGTGRLASLFS-SLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLS 99
S R + T R + + + +LE I+ + K + EE+ ++
Sbjct: 595 SRLRSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAYF 654
Query: 100 QEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILD 159
++ +K K +KK + E + D E + +E +++ ++RK QP K D
Sbjct: 655 KKVLEKEKKRKKRSEDESETEDEE------EKSQEDQEQKRKRRKTRQPDAKDGDSYDPY 708
Query: 160 DTEDT 164
D DT
Sbjct: 709 DFSDT 713
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 37.4 bits (85), Expect = 0.010
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 76 KQTIKKTKRNEEEESTSQIER-PLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE 134
K+ I K + +E+ + ER P S+ P KK K + T+ K + + +
Sbjct: 997 KENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRK 1056
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPV 194
H K ++ + ++P V + K+ D V S+ K+ +E+ + NE+ N P+
Sbjct: 1057 AHSKSAKEHQETKP---VKEEKVKKDYSKDVKSE--KLTTKEEKAKKPNEK-----NKPL 1106
Query: 195 TCNKKKLKSFFKEYG 209
+K K +E G
Sbjct: 1107 DNKGEKRKRKTEEKG 1121
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 99 SQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKIL 158
SQ+ KK K K+K + + K + A ++E E QK K+K S+ K
Sbjct: 1689 SQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEK 1748
Query: 159 DD 160
DD
Sbjct: 1749 DD 1750
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 37.4 bits (85), Expect = 0.010
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 76 KQTIKKTKRNEEEESTSQIER-PLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE 134
K+ I K + +E+ + ER P S+ P KK K + T+ K + + +
Sbjct: 1031 KENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRK 1090
Query: 135 IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPV 194
H K ++ + ++P V + K+ D V S+ K+ +E+ + NE+ N P+
Sbjct: 1091 AHSKSAKEHQETKP---VKEEKVKKDYSKDVKSE--KLTTKEEKAKKPNEK-----NKPL 1140
Query: 195 TCNKKKLKSFFKEYG 209
+K K +E G
Sbjct: 1141 DNKGEKRKRKTEEKG 1155
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 99 SQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKIL 158
SQ+ KK K K+K + + K + A ++E E QK K+K S+ K
Sbjct: 1723 SQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKEK 1782
Query: 159 DD 160
DD
Sbjct: 1783 DD 1784
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 37.4 bits (85), Expect = 0.010
Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 48 HSRGGTGRLASLFSSLEPQIQPVYVPVPKQTIKK---------TKRNEEEESTSQIERPL 98
H G T +L + +S +P +Q +PV KQ++K+ + E + ++S + + L
Sbjct: 604 HREGSTQQLQT--TSPKPLVQQPILPVVKQSVKERLGPVPSSTIEPAEAQSASSDLPQVL 661
Query: 99 SQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKIL 158
S K + A K A + ++++ ++ QK+ Q+ Q V+ ++IL
Sbjct: 662 STSTG---LTKTVYNPAALKAAQKTLLVSTSAVDNNEAQKKKQEALKLQQDVRKRKQEIL 718
Query: 159 D---DTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKS 203
+ +T+ ++S+ +K + + E++ + +T+ V +T K ++K+
Sbjct: 719 EKHIETQKMLISKLEKNKTMKSEDKAEIMKTLEVLTKNITKLKDEVKA 766
>gi|33356550 G patch domain containing 4 isoform 2 [Homo sapiens]
Length = 370
Score = 37.4 bits (85), Expect = 0.010
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 65 PQIQPVYVPVPKQTIKKTKRNEEEEST------SQIERPLSQEPAKKVKAKKKHTNAEKK 118
PQ+Q P PK+ KK ++ EEEE+T + + P E + KKK + E K
Sbjct: 193 PQLQSESKP-PKKKKKKRRQKEEEEATASERNDADEKHPEHAEQNIRKSKKKKRRHQEGK 251
Query: 119 LADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEE 178
++D + +E+ G NS+ + T ++ +KK + + EE
Sbjct: 252 VSDEREGTTKGNEKEDAAGTSGLGELNSR-----------EQTNQSLRKGKKKKRWHHEE 300
Query: 179 ERL 181
E++
Sbjct: 301 EKM 303
>gi|33356552 G patch domain containing 4 isoform 1 [Homo sapiens]
Length = 375
Score = 37.4 bits (85), Expect = 0.010
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 65 PQIQPVYVPVPKQTIKKTKRNEEEEST------SQIERPLSQEPAKKVKAKKKHTNAEKK 118
PQ+Q P PK+ KK ++ EEEE+T + + P E + KKK + E K
Sbjct: 198 PQLQSESKP-PKKKKKKRRQKEEEEATASERNDADEKHPEHAEQNIRKSKKKKRRHQEGK 256
Query: 119 LADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEE 178
++D + +E+ G NS+ + T ++ +KK + + EE
Sbjct: 257 VSDEREGTTKGNEKEDAAGTSGLGELNSR-----------EQTNQSLRKGKKKKRWHHEE 305
Query: 179 ERL 181
E++
Sbjct: 306 EKM 308
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 37.0 bits (84), Expect = 0.014
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 76 KQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEI 135
KQ K+ K++EE + R +EP KK KK +++K + +++D EEE
Sbjct: 225 KQPKKQPKKDEEGQKEEDKPR---KEPDKK--EGKKEVESKRKNLAKTGVTSTSDSEEEG 279
Query: 136 HQKQGQK-RKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNE 184
++G+K RK + R +L + + RK+ Q Q E +N+
Sbjct: 280 DDQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQQNK 329
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,777,375
Number of Sequences: 37866
Number of extensions: 422883
Number of successful extensions: 3880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 2814
Number of HSP's gapped (non-prelim): 1199
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.