BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|238624122 trafficking protein particle complex 9 isoform a [Homo sapiens] (1246 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|238624122 trafficking protein particle complex 9 isoform a [H... 2519 0.0 gi|238624124 trafficking protein particle complex 9 isoform b [H... 2312 0.0 gi|4503119 cancer/testis antigen 1B [Homo sapiens] 35 0.34 gi|21281685 cancer/testis antigen 1A [Homo sapiens] 35 0.34 gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 35 0.58 gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 34 0.76 gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 34 0.76 gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 34 1.00 gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 34 1.00 gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 34 1.00 gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 34 1.00 gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 33 2.2 gi|153792780 additional sex combs like 2 [Homo sapiens] 33 2.2 gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 2.9 gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 32 3.8 gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 32 3.8 gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 32 3.8 gi|47717134 CDC-like kinase 2 [Homo sapiens] 32 3.8 gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ... 31 6.5 gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ... 31 6.5 gi|35493801 ring finger protein 19 [Homo sapiens] 31 6.5 gi|35493782 ring finger protein 19 [Homo sapiens] 31 6.5 gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 8.4 gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 31 8.4 gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 31 8.4 gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 31 8.4 gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 31 8.4 gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 31 8.4 gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 31 8.4 gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 31 8.4 >gi|238624122 trafficking protein particle complex 9 isoform a [Homo sapiens] Length = 1246 Score = 2519 bits (6530), Expect = 0.0 Identities = 1246/1246 (100%), Positives = 1246/1246 (100%) Query: 1 MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE 60 MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE Sbjct: 1 MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE 60 Query: 61 GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP 120 GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP Sbjct: 61 GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP 120 Query: 121 VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT 180 VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT Sbjct: 121 VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT 180 Query: 181 ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ 240 ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ Sbjct: 181 ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ 240 Query: 241 TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ 300 TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ Sbjct: 241 TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ 300 Query: 301 GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT 360 GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT Sbjct: 301 GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT 360 Query: 361 GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED 420 GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED Sbjct: 361 GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED 420 Query: 421 IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE 480 IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE Sbjct: 421 IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE 480 Query: 481 EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS 540 EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS Sbjct: 481 EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS 540 Query: 541 LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD 600 LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD Sbjct: 541 LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD 600 Query: 601 VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG 660 VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG Sbjct: 601 VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG 660 Query: 661 QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT 720 QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT Sbjct: 661 QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT 720 Query: 721 SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK 780 SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK Sbjct: 721 SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK 780 Query: 781 TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG 840 TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG Sbjct: 781 TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG 840 Query: 841 MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE 900 MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE Sbjct: 841 MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE 900 Query: 901 NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY 960 NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY Sbjct: 901 NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY 960 Query: 961 SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST 1020 SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST Sbjct: 961 SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST 1020 Query: 1021 RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL 1080 RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL Sbjct: 1021 RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL 1080 Query: 1081 GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR 1140 GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR Sbjct: 1081 GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR 1140 Query: 1141 LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC 1200 LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC Sbjct: 1141 LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC 1200 Query: 1201 LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA 1246 LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA Sbjct: 1201 LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA 1246 >gi|238624124 trafficking protein particle complex 9 isoform b [Homo sapiens] Length = 1148 Score = 2312 bits (5992), Expect = 0.0 Identities = 1148/1148 (100%), Positives = 1148/1148 (100%) Query: 99 MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 158 MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH Sbjct: 1 MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 60 Query: 159 YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 218 YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL Sbjct: 61 YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 120 Query: 219 QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 278 QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV Sbjct: 121 QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 180 Query: 279 PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 338 PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL Sbjct: 181 PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 240 Query: 339 WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 398 WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT Sbjct: 241 WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 300 Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR Sbjct: 301 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360 Query: 459 SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 518 SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI Sbjct: 361 SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 420 Query: 519 AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 578 AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS Sbjct: 421 AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 480 Query: 579 VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 638 VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV Sbjct: 481 VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 540 Query: 639 RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 698 RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE Sbjct: 541 RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 600 Query: 699 VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 758 VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN Sbjct: 601 VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 660 Query: 759 GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 818 GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST Sbjct: 661 GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 720 Query: 819 NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 878 NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL Sbjct: 721 NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 780 Query: 879 QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 938 QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP Sbjct: 781 QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 840 Query: 939 ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 998 ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS Sbjct: 841 ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 900 Query: 999 TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 1058 TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF Sbjct: 901 TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 960 Query: 1059 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1118 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV Sbjct: 961 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1020 Query: 1119 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1178 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT Sbjct: 1021 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1080 Query: 1179 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1238 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH Sbjct: 1081 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1140 Query: 1239 VCALEAQA 1246 VCALEAQA Sbjct: 1141 VCALEAQA 1148 >gi|4503119 cancer/testis antigen 1B [Homo sapiens] Length = 180 Score = 35.4 bits (80), Expect = 0.34 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67 G P +AGA R R A A + P GG RG HGG G GC R Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPGGGAPRGPHGGAASGLNGCCR 77 >gi|21281685 cancer/testis antigen 1A [Homo sapiens] Length = 180 Score = 35.4 bits (80), Expect = 0.34 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67 G P +AGA R R A A + P GG RG HGG G GC R Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPGGGAPRGPHGGAASGLNGCCR 77 >gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sapiens] Length = 570 Score = 34.7 bits (78), Expect = 0.58 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 20/97 (20%) Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458 NG NP+T+T G C SPED ++ S+ +++ A ELEA ++ +R+L QK Sbjct: 80 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVQTIRILTCQKT 128 Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494 ++ A + Q+AV +QL E + ++S L++ Sbjct: 129 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 157 >gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapiens] Length = 401 Score = 34.3 bits (77), Expect = 0.76 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 GKPAQAGARTSRAS--------RALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGC 65 GKP QAGA A+ +A + +QAA A ++ GG G+H G++ G G Sbjct: 297 GKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQ 356 Query: 66 RRDPQWASAGPPPL 79 D +A P L Sbjct: 357 SPDLAHHAASPAAL 370 >gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] Length = 371 Score = 34.3 bits (77), Expect = 0.76 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 GKPAQAGARTSRAS--------RALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGC 65 GKP QAGA A+ +A + +QAA A ++ GG G+H G++ G G Sbjct: 267 GKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQ 326 Query: 66 RRDPQWASAGPPPL 79 D +A P L Sbjct: 327 SPDLAHHAASPAAL 340 >gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sapiens] Length = 750 Score = 33.9 bits (76), Expect = 1.00 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%) Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458 NG NP+T+T G C SPED ++ S+ +++ A ELEA + +R+L QK Sbjct: 92 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140 Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494 ++ A + Q+AV +QL E + ++S L++ Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169 >gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sapiens] Length = 668 Score = 33.9 bits (76), Expect = 1.00 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%) Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458 NG NP+T+T G C SPED ++ S+ +++ A ELEA + +R+L QK Sbjct: 92 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140 Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494 ++ A + Q+AV +QL E + ++S L++ Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169 >gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 724 Score = 33.9 bits (76), Expect = 1.00 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%) Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458 NG NP+T+T G C SPED ++ S+ +++ A ELEA + +R+L QK Sbjct: 153 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 201 Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494 ++ A + Q+AV +QL E + ++S L++ Sbjct: 202 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 230 >gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapiens] Length = 674 Score = 33.9 bits (76), Expect = 1.00 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 9 RAPHRGKPAQAGARTSRASRAL-RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67 R+ R + R+ R +R+ RSW RS++ + R R S GG R+GHR R Sbjct: 397 RSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRS 456 Query: 68 DPQWASAGP 76 + GP Sbjct: 457 PARRGGYGP 465 >gi|157676331 hyaluronan binding protein 4 [Homo sapiens] Length = 413 Score = 32.7 bits (73), Expect = 2.2 Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 25 RASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPPLS 80 R + L+ RR +AA A PRGG G+R G G R + + P P++ Sbjct: 48 RRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVA 103 >gi|153792780 additional sex combs like 2 [Homo sapiens] Length = 1435 Score = 32.7 bits (73), Expect = 2.2 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 13/119 (10%) Query: 750 QTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV--------EVIPALPRLQI-STS 800 +T ++ V + + + + L+ LP + S +T +PA L+ TS Sbjct: 873 KTDASVPVAVTPSPLTSLLTTATLEKLPVPQVSATTAPAGSAPPSSTLPAASSLKTPGTS 932 Query: 801 LPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEK 859 L + +L+P+S + + QL G+ + +E I +PL K+E+ + LT KE+ Sbjct: 933 LNMNGPTLRPTSSIPANNPLVTQLLQGKD----VPMEQILPKPLTKVEMKTVPLTAKEE 987 >gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] Length = 1312 Score = 32.3 bits (72), Expect = 2.9 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 10/79 (12%) Query: 3 PAGDQDRAPHRGKPAQAGARTSRASRAL---RSWRRSQAARATVTHPRGGHDRGSHGGYR 59 PA D HR + + G+ S ++R RS RS R+ T R G R S R Sbjct: 546 PASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRS--R 603 Query: 60 EGHRGCRRDPQWASAGPPP 78 E R RR SA PPP Sbjct: 604 EKRRRRRR-----SASPPP 617 >gi|4503509 eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa [Homo sapiens] Length = 1382 Score = 32.0 bits (71), Expect = 3.8 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 6 DQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGG--HDRGSHGGYREGHR 63 D+DR P RG G R A SWR + R PR G DRG G + R Sbjct: 1033 DEDRGPRRGMDDDRGPRRGGADDERSSWRNADDDRG----PRRGLDDDRGPRRG-MDDDR 1087 Query: 64 GCRR 67 G RR Sbjct: 1088 GPRR 1091 >gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] Length = 180 Score = 32.0 bits (71), Expect = 3.8 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRG 64 G P +AGA R R A A + PRGG RG HGG G Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPRGGAPRGPHGGAASAQDG 74 >gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] Length = 210 Score = 32.0 bits (71), Expect = 3.8 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRG 64 G P +AGA R R A A + PRGG RG HGG G Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPRGGAPRGPHGGAASAQDG 74 >gi|47717134 CDC-like kinase 2 [Homo sapiens] Length = 498 Score = 32.0 bits (71), Expect = 3.8 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 45 HPRGGH--DRGSHGGYREGHRG----CRRDPQWASAGPPPLSFTEEVKFELRALKDWDFK 98 HPR H +RGS G YRE +R RR W+S+ E + +R+ +D + Sbjct: 3 HPRRYHSSERGSRGSYREHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYDDR 62 Query: 99 MS 100 S Sbjct: 63 SS 64 >gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo sapiens] Length = 1583 Score = 31.2 bits (69), Expect = 6.5 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 304 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 334 R H+ LC +AG+LQ +L HY ++ R+V Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640 >gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo sapiens] Length = 1640 Score = 31.2 bits (69), Expect = 6.5 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 304 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 334 R H+ LC +AG+LQ +L HY ++ R+V Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640 >gi|35493801 ring finger protein 19 [Homo sapiens] Length = 838 Score = 31.2 bits (69), Expect = 6.5 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%) Query: 752 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 804 TG+++ +G H G D L + + +G+++ ++ RL++ + + Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571 Query: 805 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 852 +SL SG +S N S + G I L+ G ++++ SK Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623 >gi|35493782 ring finger protein 19 [Homo sapiens] Length = 838 Score = 31.2 bits (69), Expect = 6.5 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%) Query: 752 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 804 TG+++ +G H G D L + + +G+++ ++ RL++ + + Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571 Query: 805 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 852 +SL SG +S N S + G I L+ G ++++ SK Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623 >gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] Length = 715 Score = 30.8 bits (68), Expect = 8.4 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 11 PHRGKPAQAGART-SRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDP 69 P ++ ART SR S R+ + S+A+ RG H RG G R G R +R P Sbjct: 78 PSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPG-RRGSRSSKRSP 136 Query: 70 QWAS 73 AS Sbjct: 137 SRAS 140 >gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] Length = 508 Score = 30.8 bits (68), Expect = 8.4 Identities = 16/48 (33%), Positives = 22/48 (45%) Query: 31 RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPP 78 R R ++ TH GG GS G G +G D + ++AG PP Sbjct: 442 RFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 489 >gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] Length = 490 Score = 30.8 bits (68), Expect = 8.4 Identities = 16/48 (33%), Positives = 22/48 (45%) Query: 31 RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPP 78 R R ++ TH GG GS G G +G D + ++AG PP Sbjct: 424 RFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 471 >gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] Length = 819 Score = 30.8 bits (68), Expect = 8.4 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 9 RAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGG 57 + P R KPA AGA++ R +++ AA AT +H GG+ + GG Sbjct: 524 KQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGAT-SHGGGGNKQSRGGG 571 >gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] Length = 499 Score = 30.8 bits (68), Expect = 8.4 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Query: 15 KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74 +P A +R R WRR + GG +GG R HRG Sbjct: 108 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 159 Query: 75 GPPPL 79 GP PL Sbjct: 160 GPSPL 164 >gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] Length = 499 Score = 30.8 bits (68), Expect = 8.4 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Query: 15 KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74 +P A +R R WRR + GG +GG R HRG Sbjct: 108 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 159 Query: 75 GPPPL 79 GP PL Sbjct: 160 GPSPL 164 >gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] Length = 536 Score = 30.8 bits (68), Expect = 8.4 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Query: 15 KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74 +P A +R R WRR + GG +GG R HRG Sbjct: 145 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 196 Query: 75 GPPPL 79 GP PL Sbjct: 197 GPSPL 201 >gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] Length = 1073 Score = 30.8 bits (68), Expect = 8.4 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 28/159 (17%) Query: 746 VGVPQTTGTITVNGYHTTVFGVF----SDCLLDNL----------------PGIKTSGST 785 +G+ TGT TVN + T G F + +L N+ PG+ TSG Sbjct: 302 IGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGV-TSGVN 360 Query: 786 VEVIPALPRLQISTSLPRSA--HSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEP 843 V ++ + IS+S S+ ++ +G +S+ N S+ ++KL++ EP Sbjct: 361 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVN-TSRFRVVKLDS-SSEP 418 Query: 844 LEKLEVTSKVLTTKEKLY---GDFLSWKLEETLAQFPLQ 879 +K T KE L K+ ET+ Q P++ Sbjct: 419 FKKGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIE 457 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,429,324 Number of Sequences: 37866 Number of extensions: 2396222 Number of successful extensions: 5972 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 5948 Number of HSP's gapped (non-prelim): 45 length of query: 1246 length of database: 18,247,518 effective HSP length: 114 effective length of query: 1132 effective length of database: 13,930,794 effective search space: 15769658808 effective search space used: 15769658808 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.