Search of human proteins with 238624122

Search of human proteins with 238624122

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|238624122 trafficking protein particle complex 9 isoform a
[Homo sapiens]
         (1246 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|238624122 trafficking protein particle complex 9 isoform a [H...  2519   0.0  
gi|238624124 trafficking protein particle complex 9 isoform b [H...  2312   0.0  
gi|4503119 cancer/testis antigen 1B [Homo sapiens]                     35   0.34 
gi|21281685 cancer/testis antigen 1A [Homo sapiens]                    35   0.34 
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap...    35   0.58 
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi...    34   0.76 
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]     34   0.76 
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa...    34   1.00 
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa...    34   1.00 
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik...    34   1.00 
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    34   1.00 
gi|157676331 hyaluronan binding protein 4 [Homo sapiens]               33   2.2  
gi|153792780 additional sex combs like 2 [Homo sapiens]                33   2.2  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   2.9  
gi|4503509 eukaryotic translation initiation factor 3, subunit 1...    32   3.8  
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]     32   3.8  
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]     32   3.8  
gi|47717134 CDC-like kinase 2 [Homo sapiens]                           32   3.8  
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ...    31   6.5  
gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ...    31   6.5  
gi|35493801 ring finger protein 19 [Homo sapiens]                      31   6.5  
gi|35493782 ring finger protein 19 [Homo sapiens]                      31   6.5  
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          31   8.4  
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]          31   8.4  
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]          31   8.4  
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            31   8.4  
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]            31   8.4  
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]            31   8.4  
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]            31   8.4  
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]    31   8.4  

>gi|238624122 trafficking protein particle complex 9 isoform a [Homo
            sapiens]
          Length = 1246

 Score = 2519 bits (6530), Expect = 0.0
 Identities = 1246/1246 (100%), Positives = 1246/1246 (100%)

Query: 1    MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE 60
            MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE
Sbjct: 1    MVPAGDQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYRE 60

Query: 61   GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP 120
            GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP
Sbjct: 61   GHRGCRRDPQWASAGPPPLSFTEEVKFELRALKDWDFKMSVPDYMQCAEDHQTLLVVVQP 120

Query: 121  VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT 180
            VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT
Sbjct: 121  VGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLIT 180

Query: 181  ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ 240
            ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ
Sbjct: 181  ITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQ 240

Query: 241  TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ 300
            TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ
Sbjct: 241  TVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQ 300

Query: 301  GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT 360
            GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT
Sbjct: 301  GRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGT 360

Query: 361  GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED 420
            GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED
Sbjct: 361  GGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPED 420

Query: 421  IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE 480
            IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE
Sbjct: 421  IIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEE 480

Query: 481  EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS 540
            EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS
Sbjct: 481  EKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLS 540

Query: 541  LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD 600
            LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD
Sbjct: 541  LDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKD 600

Query: 601  VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG 660
            VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG
Sbjct: 601  VAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLG 660

Query: 661  QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT 720
            QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT
Sbjct: 661  QNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLT 720

Query: 721  SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK 780
            SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK
Sbjct: 721  SGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIK 780

Query: 781  TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG 840
            TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG
Sbjct: 781  TSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIG 840

Query: 841  MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE 900
            MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE
Sbjct: 841  MEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQE 900

Query: 901  NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY 960
            NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY
Sbjct: 901  NLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKY 960

Query: 961  SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST 1020
            SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST
Sbjct: 961  SGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVST 1020

Query: 1021 RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL 1080
            RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL
Sbjct: 1021 RSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKL 1080

Query: 1081 GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR 1140
            GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR
Sbjct: 1081 GICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVR 1140

Query: 1141 LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC 1200
            LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC
Sbjct: 1141 LEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSAC 1200

Query: 1201 LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA 1246
            LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA
Sbjct: 1201 LGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA 1246


>gi|238624124 trafficking protein particle complex 9 isoform b [Homo
            sapiens]
          Length = 1148

 Score = 2312 bits (5992), Expect = 0.0
 Identities = 1148/1148 (100%), Positives = 1148/1148 (100%)

Query: 99   MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 158
            MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH
Sbjct: 1    MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHH 60

Query: 159  YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 218
            YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL
Sbjct: 61   YPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGL 120

Query: 219  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 278
            QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV
Sbjct: 121  QGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCV 180

Query: 279  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 338
            PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL
Sbjct: 181  PFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFL 240

Query: 339  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 398
            WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT
Sbjct: 241  WLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTT 300

Query: 399  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458
            NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR
Sbjct: 301  NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 360

Query: 459  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 518
            SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI
Sbjct: 361  SMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSI 420

Query: 519  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 578
            AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS
Sbjct: 421  AEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALS 480

Query: 579  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 638
            VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV
Sbjct: 481  VRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIV 540

Query: 639  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 698
            RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE
Sbjct: 541  RHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCE 600

Query: 699  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 758
            VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN
Sbjct: 601  VQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVN 660

Query: 759  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 818
            GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST
Sbjct: 661  GYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEIST 720

Query: 819  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 878
            NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL
Sbjct: 721  NVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPL 780

Query: 879  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 938
            QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP
Sbjct: 781  QPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPP 840

Query: 939  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 998
            ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS
Sbjct: 841  ESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATS 900

Query: 999  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 1058
            TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF
Sbjct: 901  TRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQF 960

Query: 1059 ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1118
            ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV
Sbjct: 961  ANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDV 1020

Query: 1119 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1178
            LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT
Sbjct: 1021 LVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDT 1080

Query: 1179 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1238
            VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH
Sbjct: 1081 VSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVH 1140

Query: 1239 VCALEAQA 1246
            VCALEAQA
Sbjct: 1141 VCALEAQA 1148


>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
          Length = 180

 Score = 35.4 bits (80), Expect = 0.34
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67
          G P +AGA   R  R         A  A  + P GG  RG HGG   G  GC R
Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPGGGAPRGPHGGAASGLNGCCR 77


>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
          Length = 180

 Score = 35.4 bits (80), Expect = 0.34
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67
          G P +AGA   R  R         A  A  + P GG  RG HGG   G  GC R
Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPGGGAPRGPHGGAASGLNGCCR 77


>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
           sapiens]
          Length = 570

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 20/97 (20%)

Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA ++ +R+L  QK 
Sbjct: 80  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVQTIRILTCQKT 128

Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 129 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 157


>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
           sapiens]
          Length = 401

 Score = 34.3 bits (77), Expect = 0.76
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 14  GKPAQAGARTSRAS--------RALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGC 65
           GKP QAGA    A+        +A    + +QAA A ++   GG   G+H G++ G  G 
Sbjct: 297 GKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQ 356

Query: 66  RRDPQWASAGPPPL 79
             D    +A P  L
Sbjct: 357 SPDLAHHAASPAAL 370


>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
          Length = 371

 Score = 34.3 bits (77), Expect = 0.76
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 14  GKPAQAGARTSRAS--------RALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGC 65
           GKP QAGA    A+        +A    + +QAA A ++   GG   G+H G++ G  G 
Sbjct: 267 GKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQ 326

Query: 66  RRDPQWASAGPPPL 79
             D    +A P  L
Sbjct: 327 SPDLAHHAASPAAL 340


>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 750

 Score = 33.9 bits (76), Expect = 1.00
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 92  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140

Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169


>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 668

 Score = 33.9 bits (76), Expect = 1.00
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 92  NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 140

Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 141 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 169


>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
           protein 6 [Homo sapiens]
          Length = 724

 Score = 33.9 bits (76), Expect = 1.00
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 20/97 (20%)

Query: 399 NGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKR 458
           NG NP+T+T  G    C SPED     ++  S+  +++ A   ELEA +  +R+L  QK 
Sbjct: 153 NGTNPETTTSGG----CHSPED-----EQKASH--QHQEALRRELEAQVHTIRILTCQKT 201

Query: 459 SME-ASEFLQNAVYINLRQLSEEEKIQRYSILSELYE 494
            ++ A  + Q+AV    +QL  E +     ++S L++
Sbjct: 202 ELQMALYYSQHAV----KQLEGEAR----DLISRLHD 230


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 33.9 bits (76), Expect = 1.00
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 9   RAPHRGKPAQAGARTSRASRAL-RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRR 67
           R+  R +      R+ R +R+  RSW RS++     +  R    R S GG R+GHR  R 
Sbjct: 397 RSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRS 456

Query: 68  DPQWASAGP 76
             +    GP
Sbjct: 457 PARRGGYGP 465


>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
          Length = 413

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 25  RASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPPLS 80
           R  + L+  RR +AA A    PRGG       G+R G  G R   +   + P P++
Sbjct: 48  RRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVA 103


>gi|153792780 additional sex combs like 2 [Homo sapiens]
          Length = 1435

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 750 QTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV--------EVIPALPRLQI-STS 800
           +T  ++ V    + +  + +   L+ LP  + S +T           +PA   L+   TS
Sbjct: 873 KTDASVPVAVTPSPLTSLLTTATLEKLPVPQVSATTAPAGSAPPSSTLPAASSLKTPGTS 932

Query: 801 LPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEK 859
           L  +  +L+P+S    +  +  QL  G+     + +E I  +PL K+E+ +  LT KE+
Sbjct: 933 LNMNGPTLRPTSSIPANNPLVTQLLQGKD----VPMEQILPKPLTKVEMKTVPLTAKEE 987


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 3   PAGDQDRAPHRGKPAQAGARTSRASRAL---RSWRRSQAARATVTHPRGGHDRGSHGGYR 59
           PA   D   HR +  + G+  S ++R     RS  RS   R+  T  R G  R S    R
Sbjct: 546 PASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRS--R 603

Query: 60  EGHRGCRRDPQWASAGPPP 78
           E  R  RR     SA PPP
Sbjct: 604 EKRRRRRR-----SASPPP 617


>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
            theta, 150/170kDa [Homo sapiens]
          Length = 1382

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 6    DQDRAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGG--HDRGSHGGYREGHR 63
            D+DR P RG     G R   A     SWR +   R     PR G   DRG   G  +  R
Sbjct: 1033 DEDRGPRRGMDDDRGPRRGGADDERSSWRNADDDRG----PRRGLDDDRGPRRG-MDDDR 1087

Query: 64   GCRR 67
            G RR
Sbjct: 1088 GPRR 1091


>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo
          sapiens]
          Length = 180

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRG 64
          G P +AGA   R  R         A  A  + PRGG  RG HGG      G
Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPRGGAPRGPHGGAASAQDG 74


>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo
          sapiens]
          Length = 210

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 14 GKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRG 64
          G P +AGA   R  R         A  A  + PRGG  RG HGG      G
Sbjct: 32 GGPGEAGATGGRGPRG--------AGAARASGPRGGAPRGPHGGAASAQDG 74


>gi|47717134 CDC-like kinase 2 [Homo sapiens]
          Length = 498

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 45  HPRGGH--DRGSHGGYREGHRG----CRRDPQWASAGPPPLSFTEEVKFELRALKDWDFK 98
           HPR  H  +RGS G YRE +R      RR   W+S+         E  + +R+   +D +
Sbjct: 3   HPRRYHSSERGSRGSYREHYRSRKHKRRRSRSWSSSSDRTRRRRREDSYHVRSRSSYDDR 62

Query: 99  MS 100
            S
Sbjct: 63  SS 64


>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
           sapiens]
          Length = 1583

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 304 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 334
           R H+  LC +AG+LQ +L HY    ++ R+V
Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640


>gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo
           sapiens]
          Length = 1640

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 304 RKHVGDLCLQAGMLQDSLVHYHMSVELLRSV 334
           R H+  LC +AG+LQ +L HY    ++ R+V
Sbjct: 610 RAHIAQLCEKAGLLQQALEHYTDLYDIKRAV 640


>gi|35493801 ring finger protein 19 [Homo sapiens]
          Length = 838

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 752 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 804
           TG+++ +G H    G   D L +    +  +G+++        ++    RL++   + + 
Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571

Query: 805 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 852
            +SL   SG      +S N S +   G      I L+  G     ++++ SK
Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623


>gi|35493782 ring finger protein 19 [Homo sapiens]
          Length = 838

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 752 TGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTV-------EVIPALPRLQISTSLPRS 804
           TG+++ +G H    G   D L +    +  +G+++        ++    RL++   + + 
Sbjct: 512 TGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKE 571

Query: 805 AHSLQPSSG----DEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSK 852
            +SL   SG      +S N S +   G      I L+  G     ++++ SK
Sbjct: 572 RYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESK 623


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 11  PHRGKPAQAGART-SRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDP 69
           P      ++ ART SR S   R+ + S+A+       RG H RG   G R G R  +R P
Sbjct: 78  PSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPG-RRGSRSSKRSP 136

Query: 70  QWAS 73
             AS
Sbjct: 137 SRAS 140


>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
          Length = 508

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 31  RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPP 78
           R  R    ++   TH  GG   GS G    G +G   D + ++AG PP
Sbjct: 442 RFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 489


>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
          Length = 490

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 31  RSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASAGPPP 78
           R  R    ++   TH  GG   GS G    G +G   D + ++AG PP
Sbjct: 424 RFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 471


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 9   RAPHRGKPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGG 57
           + P R KPA AGA++       R  +++ AA AT +H  GG+ +   GG
Sbjct: 524 KQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGAT-SHGGGGNKQSRGGG 571


>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 15  KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74
           +P  A    +R  R    WRR  +         GG     +GG R  HRG          
Sbjct: 108 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 159

Query: 75  GPPPL 79
           GP PL
Sbjct: 160 GPSPL 164


>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 15  KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74
           +P  A    +R  R    WRR  +         GG     +GG R  HRG          
Sbjct: 108 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 159

Query: 75  GPPPL 79
           GP PL
Sbjct: 160 GPSPL 164


>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 536

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 15  KPAQAGARTSRASRALRSWRRSQAARATVTHPRGGHDRGSHGGYREGHRGCRRDPQWASA 74
           +P  A    +R  R    WRR  +         GG     +GG R  HRG          
Sbjct: 145 RPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI--------C 196

Query: 75  GPPPL 79
           GP PL
Sbjct: 197 GPSPL 201


>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
          Length = 1073

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 746 VGVPQTTGTITVNGYHTTVFGVF----SDCLLDNL----------------PGIKTSGST 785
           +G+   TGT TVN  + T  G F    +  +L N+                PG+ TSG  
Sbjct: 302 IGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGV-TSGVN 360

Query: 786 VEVIPALPRLQISTSLPRSA--HSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEP 843
           V ++  +    IS+S   S+  ++    +G  +S+       N  S+  ++KL++   EP
Sbjct: 361 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVN-TSRFRVVKLDS-SSEP 418

Query: 844 LEKLEVTSKVLTTKEKLY---GDFLSWKLEETLAQFPLQ 879
            +K   T      KE         L  K+ ET+ Q P++
Sbjct: 419 FKKGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIE 457


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,429,324
Number of Sequences: 37866
Number of extensions: 2396222
Number of successful extensions: 5972
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5948
Number of HSP's gapped (non-prelim): 45
length of query: 1246
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1132
effective length of database: 13,930,794
effective search space: 15769658808
effective search space used: 15769658808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.