Guide to the Human Genome
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Search of human proteins with 238550210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
         (354 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]         733   0.0  
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]         711   0.0  
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]         704   0.0  
gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens]         284   1e-76
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    38   0.012
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    38   0.012
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re...    38   0.012
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re...    38   0.012
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r...    38   0.012
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    37   0.021
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 37   0.021
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]               37   0.035
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]             36   0.046
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]            36   0.060
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]            36   0.060
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ...    36   0.060
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ...    36   0.060
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ...    36   0.060
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    35   0.078
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          35   0.078
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          35   0.078
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          35   0.078
gi|157738639 tensin 4 [Homo sapiens]                                   35   0.078
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     35   0.10 
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]            35   0.10 
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       35   0.13 
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]            35   0.13 
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ...    34   0.17 
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ...    34   0.17 
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ...    34   0.17 

>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
          Length = 354

 Score =  733 bits (1893), Expect = 0.0
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MAQAPADPGREAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMR 60
           MAQAPADPGREAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMR
Sbjct: 1   MAQAPADPGREAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMR 60

Query: 61  TAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPN 120
           TAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPN
Sbjct: 61  TAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPN 120

Query: 121 SWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIH 180
           SWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIH
Sbjct: 121 SWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIH 180

Query: 181 MEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPE 240
           MEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPE
Sbjct: 181 MEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPE 240

Query: 241 GEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 300
           GEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS
Sbjct: 241 GEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 300

Query: 301 HFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 354
           HFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI
Sbjct: 301 HFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 354


>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
          Length = 429

 Score =  711 bits (1835), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 12  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 71
           AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR
Sbjct: 87  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 146

Query: 72  MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 131
           MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI
Sbjct: 147 MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 206

Query: 132 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 191
           QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL
Sbjct: 207 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 266

Query: 192 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 251
           GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS
Sbjct: 267 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 326

Query: 252 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 311
           CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT
Sbjct: 327 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 386

Query: 312 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 354
           PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI
Sbjct: 387 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 429


>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
          Length = 428

 Score =  704 bits (1818), Expect = 0.0
 Identities = 342/343 (99%), Positives = 342/343 (99%), Gaps = 1/343 (0%)

Query: 12  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 71
           AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR
Sbjct: 87  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 146

Query: 72  MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 131
           MKSRHLLDMDEQSKAWTIYRP DSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI
Sbjct: 147 MKSRHLLDMDEQSKAWTIYRP-DSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 205

Query: 132 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 191
           QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL
Sbjct: 206 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 265

Query: 192 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 251
           GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS
Sbjct: 266 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 325

Query: 252 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 311
           CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT
Sbjct: 326 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 385

Query: 312 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 354
           PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI
Sbjct: 386 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 428


>gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens]
          Length = 248

 Score =  284 bits (726), Expect = 1e-76
 Identities = 139/143 (97%), Positives = 140/143 (97%)

Query: 12  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 71
           AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR
Sbjct: 87  AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 146

Query: 72  MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 131
           MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI
Sbjct: 147 MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 206

Query: 132 QIGHGNIITRQTVSREDGSAGPR 154
           QIGHGNIITRQTVSREDG +  R
Sbjct: 207 QIGHGNIITRQTVSREDGKSPKR 229


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 149 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPA 208
           G  G R LP   PG   + G+  +P  P  +H+ +        G        G+P +   
Sbjct: 676 GPKGSRGLPG-TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGL 734

Query: 209 HIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSIS 268
               GSP +  +       F A   +PG     +  Q +     FL D+ +     +   
Sbjct: 735 PGMIGSPGLPGSKGATGDIFGAENGAPGE----QGLQGLTGHKGFLGDSGLPGLKGVHGK 790

Query: 269 PGVAGPGGVAGS----GE-GEPGEDAGRRPADTQSRSHFPRDIGQPITPSH 314
           PG+ GP G  GS    G+ G+PG      P   + +S  P   G P    H
Sbjct: 791 PGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGH 841


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 149 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPA 208
           G  G R LP   PG   + G+  +P  P  +H+ +        G        G+P +   
Sbjct: 675 GPKGSRGLPG-TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGL 733

Query: 209 HIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSIS 268
               GSP +  +       F A   +PG     +  Q +     FL D+ +     +   
Sbjct: 734 PGMIGSPGLPGSKGATGDIFGAENGAPGE----QGLQGLTGHKGFLGDSGLPGLKGVHGK 789

Query: 269 PGVAGPGGVAGS----GE-GEPGEDAGRRPADTQSRSHFPRDIGQPITPSH 314
           PG+ GP G  GS    G+ G+PG      P   + +S  P   G P    H
Sbjct: 790 PGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGH 840


>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin c2 isoform b [Homo sapiens]
          Length = 1130

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 177  QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 233
            Q  HMEQ     ++    +  ++H    + P  +PPGS P+  T AAGP A     +   
Sbjct: 963  QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 1022

Query: 234  SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 292
            S    P G  A             ++G S ++  +   AGP     +G  +PG    G  
Sbjct: 1023 SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1072

Query: 293  PADTQSRSHFPRDIGQP 309
            P      S FP     P
Sbjct: 1073 PPGPHGPSPFPNQQTPP 1089


>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin c2 isoform a [Homo sapiens]
          Length = 1214

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 177  QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 233
            Q  HMEQ     ++    +  ++H    + P  +PPGS P+  T AAGP A     +   
Sbjct: 932  QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 991

Query: 234  SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 292
            S    P G  A             ++G S ++  +   AGP     +G  +PG    G  
Sbjct: 992  SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1041

Query: 293  PADTQSRSHFPRDIGQP 309
            P      S FP     P
Sbjct: 1042 PPGPHGPSPFPNQQTPP 1058


>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin c2 isoform c [Homo sapiens]
          Length = 1152

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 177  QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 233
            Q  HMEQ     ++    +  ++H    + P  +PPGS P+  T AAGP A     +   
Sbjct: 963  QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 1022

Query: 234  SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 292
            S    P G  A             ++G S ++  +   AGP     +G  +PG    G  
Sbjct: 1023 SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1072

Query: 293  PADTQSRSHFPRDIGQP 309
            P      S FP     P
Sbjct: 1073 PPGPHGPSPFPNQQTPP 1089


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 203 PSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNS 262
           P  GP   PP  PP     A P AS     P P   P   A+    + S   +    G  
Sbjct: 774 PGRGPPPAPPPPPPPPRAPADPAAS-----PDP---PSAVASPGSGLSSPGPKPGDSGYE 825

Query: 263 NKMSISPGVAGPGGVAGSGEGEPGEDAGRRPAD 295
            +   SP  A PGG A   EG P   A   P D
Sbjct: 826 TETPFSPEGAFPGGGAAEEEGVPRPRAPPEPPD 858


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKM 265
           GPA   PG  P+S +A G        +P P   PE +AA         LE    G     
Sbjct: 343 GPASCQPGRQPLSPSATGDTRG----VPQPSWGPEAQAASASSSPLEALEACLKGIPPNG 398

Query: 266 SISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITP 312
           S SP    P   + S   +PG+   ++P     RSH      +P+ P
Sbjct: 399 S-SPSQLPP--TSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLP 442


>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
          Length = 533

 Score = 36.6 bits (83), Expect = 0.035
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 13/148 (8%)

Query: 181 MEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSP--PVSATAAGPEASFEARIPSPGTH 238
           ++ SIL      +SN M +   PS      PP  P  P++A    P     + +P P T+
Sbjct: 156 LQNSILPAKPFPNSNSMYIDRPPSGKTPQQPPVPPQRPMAALPPPPAGRNHSPLPPPQTN 215

Query: 239 PEGEAAQRIHMKSCFLEDATIGNSNK----MSISPGVAGPGGVAGSGEGEPGEDAGRRPA 294
            E  +  R H K+  L   +I  S K     S++P    P  +   G+  P  D    PA
Sbjct: 216 HEEPSRSRNH-KTAKLPAPSIDRSTKPPLDRSLAPFDREPFTL---GKKPPFSDKPSIPA 271

Query: 295 DTQSRSHFPRDIGQPITPS---HSKLTP 319
                 H P+    P+ P+   H + +P
Sbjct: 272 GRSLGEHLPKIQKPPLPPTTERHERSSP 299


>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
          Length = 496

 Score = 36.2 bits (82), Expect = 0.046
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 19/88 (21%)

Query: 212 PGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISP-- 269
           PG+PP  A AAGP A        P T  EG AA+          DA + +  ++ + P  
Sbjct: 255 PGAPPAQAWAAGPGA-------GPETAGEGTAAE--------AGDAPLASDRRLLLGPAG 299

Query: 270 -GVAGPGGVAGSGEGE-PGEDAGRRPAD 295
            GV   GG+   G GE P   A   P++
Sbjct: 300 GGVPKLGGLLPEGGGEAPAPAAAAEPSE 327


>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 194 SNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE-ASFEARIPSPGTHPEGEAAQRIHMKSC 252
           S+E+R  G P  G A   PGS   SA A GP   S +      G       A   + ++ 
Sbjct: 106 SSELRALGRP--GAAGPGPGSGDASALAGGPRPVSRDTSSARSGACCGCSRANSQYWRAS 163

Query: 253 FLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQ 297
               AT  NS   S+ P  A  G   G+ EGE G  AG   A+TQ
Sbjct: 164 SRAAATACNSQN-SLQPRGAAAGEAEGAEEGEEGCRAGPFMAETQ 207


>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 261
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172

Query: 262 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 305
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216


>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
           sapiens]
          Length = 212

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 194 SNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE-ASFEARIPSPGTHPEGEAAQRIHMKSC 252
           S+E+R  G P  G A   PGS   SA A GP   S +      G       A   + ++ 
Sbjct: 106 SSELRALGRP--GAAGPGPGSGDASALAGGPRPVSRDTSSARSGACCGCSRANSQYWRAS 163

Query: 253 FLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQ 297
               AT  NS   S+ P  A  G   G+ EGE G  AG   A+TQ
Sbjct: 164 SRAAATACNSQN-SLQPRGAAAGEAEGAEEGEEGCRAGPFMAETQ 207


>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
           sapiens]
          Length = 331

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 261
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172

Query: 262 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 305
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216


>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
           sapiens]
          Length = 331

 Score = 35.8 bits (81), Expect = 0.060
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 206 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 261
           G   + PG   V ++  G  A+F    P+PG+    H E  A+     ++       +G 
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172

Query: 262 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 305
           ++++ ++ G       AGS  G  G + G +P     R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
           sapiens]
          Length = 1242

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 44/174 (25%), Positives = 61/174 (35%), Gaps = 55/174 (31%)

Query: 203 PSEGPAHIPPGSPP-----------VSATAAGPEASFEAR---------IPSPGTHPEGE 242
           P E P+   PG+ P           VSA  + P A+ ++          +  PG +P   
Sbjct: 590 PEEAPSAASPGTEPTGTSEPLGTGTVSAELSSPWAARDSEQSTDALTDPVTDPGPNPSDT 649

Query: 243 AAQRIHMKSCFLEDATI-----------GNSNKMSISPGVAGPGGVAGSGEGEP------ 285
           A  R   +S ++ +  +             S   S SPG  GPG   GS   EP      
Sbjct: 650 AIWRRIFQSSYIREQYVLTHCSASPEPGPGSTGSSESPGSQGPGSPEGSAPLEPPSQQGC 709

Query: 286 -----GEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAA 334
                GE AG R     + +  P  +G             L T  LG R H+AA
Sbjct: 710 RSLAWGEPAGSRSCPLPAPTPAPFKVG------------ALSTEVLG-RQHRAA 750


>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2790

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 210  IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 267
            +PPG    + T   P        PS    PE         ++C L    + +S+  S+  
Sbjct: 2199 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2258

Query: 268  --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 300
              SPG  G  G  G G G P +  G+R   TQ  S
Sbjct: 2259 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2292


>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 210  IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 267
            +PPG    + T   P        PS    PE         ++C L    + +S+  S+  
Sbjct: 2115 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2174

Query: 268  --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 300
              SPG  G  G  G G G P +  G+R   TQ  S
Sbjct: 2175 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2208


>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 210  IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 267
            +PPG    + T   P        PS    PE         ++C L    + +S+  S+  
Sbjct: 2115 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2174

Query: 268  --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 300
              SPG  G  G  G G G P +  G+R   TQ  S
Sbjct: 2175 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2208


>gi|157738639 tensin 4 [Homo sapiens]
          Length = 715

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 37/214 (17%)

Query: 128 SEAIQIGHGNIITRQTVSREDGSAGPRHL--PSMAP--GDSSTWGTLVDPWGPQDIHME- 182
           SEA+ I +  +    T +R     GP+H   PS+ P  G   + G L+    P++     
Sbjct: 143 SEALDIKYIEV----TSARSRCHDGPQHCSSPSVTPPFGSLRSGGLLLSRDVPRETRSSS 198

Query: 183 QSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSP------- 235
           +S++     G  ++  L   PSEG +  PP SP +S    G +AS    + SP       
Sbjct: 199 ESLIFSGNQGRGHQRPLP--PSEGLSPRPPNSPSISIPCMGSKASSPHGLGSPLVASPRL 256

Query: 236 -----GTHPEGEAAQRIHMKSCF-LEDATI-----------GNSNKMSISPGVAGPGGVA 278
                G  P  +   RI + S   + D +             NS+  S S  +  P   +
Sbjct: 257 EKRLGGLAP--QRGSRISVLSASPVSDVSYMFGSSQSLLHSSNSSHQSSSRSLESPANSS 314

Query: 279 GSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITP 312
            S           RP+D Q+  +    +GQP TP
Sbjct: 315 SSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTP 348


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 190 QLGHSNEMRLHG-VPSEGPAHIPPGS--PPVSATAAGPEASFEARIPSPGTHPEGEAAQR 246
           ++G   E  LHG     GPA  P G   PP  + AAGP     +R PS    P+G   + 
Sbjct: 566 EVGKPGERGLHGEFGLPGPAG-PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEP 624

Query: 247 IHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE 287
             + +      T G S    + PG  G  G+ G G+GE GE
Sbjct: 625 GVVGAV----GTAGPSGPSGL-PGERGAAGIPG-GKGEKGE 659


>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 149 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSE-GP 207
           G+ G R +PS+   + + W      W  +       +L   +   +   RLH  P    P
Sbjct: 67  GALGIRGIPSLCQSEGTRWSRRGRRWAER---CPPGVLGAGRSLRAQRSRLHSRPPPLSP 123

Query: 208 AHIPPGS-PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMS 266
              P GS  P SA AAG +   EA + + GT        + H     L+  +        
Sbjct: 124 LRKPGGSNQPRSAAAAGTQ---EACLQASGT----TRGWKYHALPLRLDPRS-------- 168

Query: 267 ISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQ-----PITPSHSKLTPKL 321
              G AG    AGS     G   GR  A   SR   PR + Q     P       L P  
Sbjct: 169 ---GHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTP 225

Query: 322 ETMTLGNRSHKAAEGSHY 339
                G R+ K A G  +
Sbjct: 226 SHTRRGQRTGKGARGPRF 243


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 45/166 (27%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 160 APGDSSTWGTL-----VDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGS 214
           APG     G       + P GP+ +  E+   R    G   +   HG+P +     P G 
Sbjct: 316 APGSKGEAGPTGPMGAMGPLGPRGMPGERG--RLGPQGAPGQRGAHGMPGKPGPMGPLGI 373

Query: 215 PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIH-----------MKSCFLEDATIGNSN 263
           P  S     P    EA  P+    PEG   QR             +      D T G   
Sbjct: 374 PGSSGFPGNPGMKGEAG-PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKG 432

Query: 264 KMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQP 309
               SPG +GP G AG   G PG      P   + +   P D G P
Sbjct: 433 PTG-SPGTSGPPGSAGP-PGSPGPQGSTGPQGIRGQ---PGDPGVP 473


>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 149 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSE-GP 207
           G+ G R +PS+   + + W      W  +       +L   +   +   RLH  P    P
Sbjct: 67  GALGIRGIPSLCQSEGTRWSRRGRRWAER---CPPGVLGAGRSLRAQRSRLHSRPPPLSP 123

Query: 208 AHIPPGS-PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMS 266
              P GS  P SA AAG   + EA + + GT        + H     L+  +        
Sbjct: 124 LRKPGGSNQPRSAAAAG---THEACLQASGT----TRGWKYHALPLRLDPRS-------- 168

Query: 267 ISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQ-----PITPSHSKLTPKL 321
              G AG    AGS     G   GR  A   SR   PR + Q     P       L P  
Sbjct: 169 ---GHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTP 225

Query: 322 ETMTLGNRSHKAAEGSHY 339
                G R+ K A G  +
Sbjct: 226 SHTRRGQRTGKGARGPRF 243


>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
           sapiens]
          Length = 307

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 173 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 232
           P  P   H  +   +R  L H+     H   S  P HI P  PP       P A   A  
Sbjct: 15  PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 71

Query: 233 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 287
              G   EG  AQ                     +  G  GP     G  A SG G P  
Sbjct: 72  SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 121

Query: 288 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 337
            A R    T +    PR I  P T S +        P++  +  G R S  A +GS
Sbjct: 122 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 175


>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
           sapiens]
          Length = 325

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 173 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 232
           P  P   H  +   +R  L H+     H   S  P HI P  PP       P A   A  
Sbjct: 33  PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 89

Query: 233 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 287
              G   EG  AQ                     +  G  GP     G  A SG G P  
Sbjct: 90  SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 139

Query: 288 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 337
            A R    T +    PR I  P T S +        P++  +  G R S  A +GS
Sbjct: 140 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 193


>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
           sapiens]
          Length = 325

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 173 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 232
           P  P   H  +   +R  L H+     H   S  P HI P  PP       P A   A  
Sbjct: 33  PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 89

Query: 233 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 287
              G   EG  AQ                     +  G  GP     G  A SG G P  
Sbjct: 90  SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 139

Query: 288 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 337
            A R    T +    PR I  P T S +        P++  +  G R S  A +GS
Sbjct: 140 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 193


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,052,621
Number of Sequences: 37866
Number of extensions: 920244
Number of successful extensions: 4619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 4336
Number of HSP's gapped (non-prelim): 481
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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