Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 238550208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
(428 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens] 880 0.0
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens] 875 0.0
gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens] 704 0.0
gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens] 448 e-126
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 38 0.015
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 38 0.015
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 38 0.015
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 38 0.015
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 38 0.015
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 37 0.026
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 37 0.026
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 37 0.045
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 36 0.059
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens] 36 0.077
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens] 36 0.077
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ... 36 0.077
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ... 36 0.077
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ... 36 0.077
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 35 0.100
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.100
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.100
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.100
gi|157738639 tensin 4 [Homo sapiens] 35 0.100
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.13
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.17
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 34 0.22
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 34 0.22
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 34 0.22
>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
Length = 428
Score = 880 bits (2273), Expect = 0.0
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPDSGRRAKSASIIY 180
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPDSGRRAKSASIIY
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPDSGRRAKSASIIY 180
Query: 181 QHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSST 240
QHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSST
Sbjct: 181 QHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSST 240
Query: 241 WGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEA 300
WGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEA
Sbjct: 241 WGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEA 300
Query: 301 SFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPG 360
SFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPG
Sbjct: 301 SFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPG 360
Query: 361 EDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHE 420
EDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHE
Sbjct: 361 EDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHE 420
Query: 421 GSWWGGGI 428
GSWWGGGI
Sbjct: 421 GSWWGGGI 428
>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
Length = 429
Score = 875 bits (2261), Expect = 0.0
Identities = 428/429 (99%), Positives = 428/429 (99%), Gaps = 1/429 (0%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP-DSGRRAKSASII 179
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP DSGRRAKSASII
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
Query: 180 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSS 239
YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSS
Sbjct: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSS 240
Query: 240 TWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE 299
TWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE
Sbjct: 241 TWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE 300
Query: 300 ASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEP 359
ASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEP
Sbjct: 301 ASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEP 360
Query: 360 GEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASH 419
GEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASH
Sbjct: 361 GEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASH 420
Query: 420 EGSWWGGGI 428
EGSWWGGGI
Sbjct: 421 EGSWWGGGI 429
>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
Length = 354
Score = 704 bits (1818), Expect = 0.0
Identities = 342/343 (99%), Positives = 342/343 (99%), Gaps = 1/343 (0%)
Query: 87 AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 146
AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR
Sbjct: 12 AERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYR 71
Query: 147 MKSRHLLDMDEQSKAWTIYRP-DSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 205
MKSRHLLDMDEQSKAWTIYRP DSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI
Sbjct: 72 MKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAI 131
Query: 206 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 265
QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL
Sbjct: 132 QIGHGNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQL 191
Query: 266 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 325
GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS
Sbjct: 192 GHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKS 251
Query: 326 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 385
CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT
Sbjct: 252 CFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPIT 311
Query: 386 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 428
PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI
Sbjct: 312 PSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASHEGSWWGGGI 354
>gi|238550212 Z-DNA binding protein 1 isoform d [Homo sapiens]
Length = 248
Score = 448 bits (1152), Expect = e-126
Identities = 224/229 (97%), Positives = 225/229 (98%), Gaps = 1/229 (0%)
Query: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL
Sbjct: 1 MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 60
Query: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN
Sbjct: 61 TSPATWCLGGTDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDN 120
Query: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP-DSGRRAKSASII 179
GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRP DSGRRAKSASII
Sbjct: 121 GPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASII 180
Query: 180 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGSAGPR 228
YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDG + R
Sbjct: 181 YQHNPINMICQNGPNSWISIANSEAIQIGHGNIITRQTVSREDGKSPKR 229
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 38.1 bits (87), Expect = 0.015
Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 10/171 (5%)
Query: 223 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPA 282
G G R LP PG + G+ +P P +H+ + G G+P +
Sbjct: 676 GPKGSRGLPG-TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGL 734
Query: 283 HIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSIS 342
GSP + + F A +PG + Q + FL D+ + +
Sbjct: 735 PGMIGSPGLPGSKGATGDIFGAENGAPGE----QGLQGLTGHKGFLGDSGLPGLKGVHGK 790
Query: 343 PGVAGPGGVAGS----GE-GEPGEDAGRRPADTQSRSHFPRDIGQPITPSH 388
PG+ GP G GS G+ G+PG P + +S P G P H
Sbjct: 791 PGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGH 841
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 38.1 bits (87), Expect = 0.015
Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 10/171 (5%)
Query: 223 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPA 282
G G R LP PG + G+ +P P +H+ + G G+P +
Sbjct: 675 GPKGSRGLPG-TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGL 733
Query: 283 HIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSIS 342
GSP + + F A +PG + Q + FL D+ + +
Sbjct: 734 PGMIGSPGLPGSKGATGDIFGAENGAPGE----QGLQGLTGHKGFLGDSGLPGLKGVHGK 789
Query: 343 PGVAGPGGVAGS----GE-GEPGEDAGRRPADTQSRSHFPRDIGQPITPSH 388
PG+ GP G GS G+ G+PG P + +S P G P H
Sbjct: 790 PGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGH 840
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 38.1 bits (87), Expect = 0.015
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 251 QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 307
Q HMEQ ++ + ++H + P +PPGS P+ T AAGP A +
Sbjct: 963 QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 1022
Query: 308 SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 366
S P G A ++G S ++ + AGP +G +PG G
Sbjct: 1023 SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1072
Query: 367 PADTQSRSHFPRDIGQP 383
P S FP P
Sbjct: 1073 PPGPHGPSPFPNQQTPP 1089
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 38.1 bits (87), Expect = 0.015
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 251 QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 307
Q HMEQ ++ + ++H + P +PPGS P+ T AAGP A +
Sbjct: 932 QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 991
Query: 308 SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 366
S P G A ++G S ++ + AGP +G +PG G
Sbjct: 992 SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1041
Query: 367 PADTQSRSHFPRDIGQP 383
P S FP P
Sbjct: 1042 PPGPHGPSPFPNQQTPP 1058
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 38.1 bits (87), Expect = 0.015
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 251 QDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSAT-AAGPEASFEARI--P 307
Q HMEQ ++ + ++H + P +PPGS P+ T AAGP A +
Sbjct: 963 QAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPA 1022
Query: 308 SPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE-DAGRR 366
S P G A ++G S ++ + AGP +G +PG G
Sbjct: 1023 SVVPAPAGSGA----------PPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP 1072
Query: 367 PADTQSRSHFPRDIGQP 383
P S FP P
Sbjct: 1073 PPGPHGPSPFPNQQTPP 1089
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 37.4 bits (85), Expect = 0.026
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 277 PSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNS 336
P GP PP PP A P AS P P P A+ + S + G
Sbjct: 774 PGRGPPPAPPPPPPPPRAPADPAAS-----PDP---PSAVASPGSGLSSPGPKPGDSGYE 825
Query: 337 NKMSISPGVAGPGGVAGSGEGEPGEDAGRRPAD 369
+ SP A PGG A EG P A P D
Sbjct: 826 TETPFSPEGAFPGGGAAEEEGVPRPRAPPEPPD 858
Score = 29.6 bits (65), Expect = 5.5
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 27 SPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGGTDPEGEGPAELALSSP 86
+P ++ QLV E A L+ + ++ ++ L G DPEG G E P
Sbjct: 601 APSEVPQLVSETWASP------LFPAPRPFPAQSSASGSFLLSGWDPEGRGAGETLAGDP 654
Query: 87 AE 88
AE
Sbjct: 655 AE 656
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 37.4 bits (85), Expect = 0.026
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKM 339
GPA PG P+S +A G +P P PE +AA LE G
Sbjct: 343 GPASCQPGRQPLSPSATGDTRG----VPQPSWGPEAQAASASSSPLEALEACLKGIPPNG 398
Query: 340 SISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITP 386
S SP P + S +PG+ ++P RSH +P+ P
Sbjct: 399 S-SPSQLPP--TSCSQNPQPGDSRSQKPELQPHRSHSEEATREPVLP 442
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 36.6 bits (83), Expect = 0.045
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 255 MEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSP--PVSATAAGPEASFEARIPSPGTH 312
++ SIL +SN M + PS PP P P++A P + +P P T+
Sbjct: 156 LQNSILPAKPFPNSNSMYIDRPPSGKTPQQPPVPPQRPMAALPPPPAGRNHSPLPPPQTN 215
Query: 313 PEGEAAQRIHMKSCFLEDATIGNSNK----MSISPGVAGPGGVAGSGEGEPGEDAGRRPA 368
E + R H K+ L +I S K S++P P + G+ P D PA
Sbjct: 216 HEEPSRSRNH-KTAKLPAPSIDRSTKPPLDRSLAPFDREPFTL---GKKPPFSDKPSIPA 271
Query: 369 DTQSRSHFPRDIGQPITPS---HSKLTP 393
H P+ P+ P+ H + +P
Sbjct: 272 GRSLGEHLPKIQKPPLPPTTERHERSSP 299
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 36.2 bits (82), Expect = 0.059
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 286 PGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISP-- 343
PG+PP A AAGP A P T EG AA+ DA + + ++ + P
Sbjct: 255 PGAPPAQAWAAGPGA-------GPETAGEGTAAE--------AGDAPLASDRRLLLGPAG 299
Query: 344 -GVAGPGGVAGSGEGE-PGEDAGRRPAD 369
GV GG+ G GE P A P++
Sbjct: 300 GGVPKLGGLLPEGGGEAPAPAAAAEPSE 327
>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 35.8 bits (81), Expect = 0.077
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 268 SNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE-ASFEARIPSPGTHPEGEAAQRIHMKSC 326
S+E+R G P G A PGS SA A GP S + G A + ++
Sbjct: 106 SSELRALGRP--GAAGPGPGSGDASALAGGPRPVSRDTSSARSGACCGCSRANSQYWRAS 163
Query: 327 FLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQ 371
AT NS S+ P A G G+ EGE G AG A+TQ
Sbjct: 164 SRAAATACNSQN-SLQPRGAAAGEAEGAEEGEEGCRAGPFMAETQ 207
>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 35.8 bits (81), Expect = 0.077
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 335
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
Query: 336 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 379
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
sapiens]
Length = 212
Score = 35.8 bits (81), Expect = 0.077
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 268 SNEMRLHGVPSEGPAHIPPGSPPVSATAAGPE-ASFEARIPSPGTHPEGEAAQRIHMKSC 326
S+E+R G P G A PGS SA A GP S + G A + ++
Sbjct: 106 SSELRALGRP--GAAGPGPGSGDASALAGGPRPVSRDTSSARSGACCGCSRANSQYWRAS 163
Query: 327 FLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQ 371
AT NS S+ P A G G+ EGE G AG A+TQ
Sbjct: 164 SRAAATACNSQN-SLQPRGAAAGEAEGAEEGEEGCRAGPFMAETQ 207
>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
sapiens]
Length = 331
Score = 35.8 bits (81), Expect = 0.077
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 335
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
Query: 336 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 379
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
sapiens]
Length = 331
Score = 35.8 bits (81), Expect = 0.077
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 280 GPAHIPPGSPPVSATAAGPEASFEARIPSPGT----HPEGEAAQRIHMKSCFLEDATIGN 335
G + PG V ++ G A+F P+PG+ H E A+ ++ +G
Sbjct: 116 GGRQLRPGGGKVQSSCQGSGAAFS---PAPGSAKWQHVEDGASFDGRPRALGSRARPLGA 172
Query: 336 SNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRD 379
++++ ++ G AGS G G + G +P R H PR+
Sbjct: 173 THELRVAEGCLDTSSGAGSEAGAGGAELGCQPVGLGHRPHAPRN 216
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 35.4 bits (80), Expect = 0.100
Identities = 44/174 (25%), Positives = 61/174 (35%), Gaps = 55/174 (31%)
Query: 277 PSEGPAHIPPGSPP-----------VSATAAGPEASFEAR---------IPSPGTHPEGE 316
P E P+ PG+ P VSA + P A+ ++ + PG +P
Sbjct: 590 PEEAPSAASPGTEPTGTSEPLGTGTVSAELSSPWAARDSEQSTDALTDPVTDPGPNPSDT 649
Query: 317 AAQRIHMKSCFLEDATI-----------GNSNKMSISPGVAGPGGVAGSGEGEP------ 359
A R +S ++ + + S S SPG GPG GS EP
Sbjct: 650 AIWRRIFQSSYIREQYVLTHCSASPEPGPGSTGSSESPGSQGPGSPEGSAPLEPPSQQGC 709
Query: 360 -----GEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAA 408
GE AG R + + P +G L T LG R H+AA
Sbjct: 710 RSLAWGEPAGSRSCPLPAPTPAPFKVG------------ALSTEVLG-RQHRAA 750
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 35.4 bits (80), Expect = 0.100
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 284 IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 341
+PPG + T P PS PE ++C L + +S+ S+
Sbjct: 2199 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2258
Query: 342 --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 374
SPG G G G G G P + G+R TQ S
Sbjct: 2259 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2292
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.4 bits (80), Expect = 0.100
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 284 IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 341
+PPG + T P PS PE ++C L + +S+ S+
Sbjct: 2115 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2174
Query: 342 --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 374
SPG G G G G G P + G+R TQ S
Sbjct: 2175 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2208
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.4 bits (80), Expect = 0.100
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 284 IPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSI-- 341
+PPG + T P PS PE ++C L + +S+ S+
Sbjct: 2115 LPPGKEATTPTPEPPLPLLPPPPPSEEEGPEEPPKASPESEACSLSAGDLSDSSASSLAE 2174
Query: 342 --SPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRS 374
SPG G G G G G P + G+R TQ S
Sbjct: 2175 PESPGAGGTSGGPGGGTGVP-DGMGQRRYRTQMSS 2208
>gi|157738639 tensin 4 [Homo sapiens]
Length = 715
Score = 35.4 bits (80), Expect = 0.100
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 37/214 (17%)
Query: 202 SEAIQIGHGNIITRQTVSREDGSAGPRHL--PSMAP--GDSSTWGTLVDPWGPQDIHME- 256
SEA+ I + + T +R GP+H PS+ P G + G L+ P++
Sbjct: 143 SEALDIKYIEV----TSARSRCHDGPQHCSSPSVTPPFGSLRSGGLLLSRDVPRETRSSS 198
Query: 257 QSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARIPSP------- 309
+S++ G ++ L PSEG + PP SP +S G +AS + SP
Sbjct: 199 ESLIFSGNQGRGHQRPLP--PSEGLSPRPPNSPSISIPCMGSKASSPHGLGSPLVASPRL 256
Query: 310 -----GTHPEGEAAQRIHMKSCF-LEDATI-----------GNSNKMSISPGVAGPGGVA 352
G P + RI + S + D + NS+ S S + P +
Sbjct: 257 EKRLGGLAP--QRGSRISVLSASPVSDVSYMFGSSQSLLHSSNSSHQSSSRSLESPANSS 314
Query: 353 GSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITP 386
S RP+D Q+ + +GQP TP
Sbjct: 315 SSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTP 348
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.0 bits (79), Expect = 0.13
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 264 QLGHSNEMRLHG-VPSEGPAHIPPGS--PPVSATAAGPEASFEARIPSPGTHPEGEAAQR 320
++G E LHG GPA P G PP + AAGP +R PS P+G +
Sbjct: 566 EVGKPGERGLHGEFGLPGPAG-PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEP 624
Query: 321 IHMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGE 361
+ + T G S + PG G G+ G G+GE GE
Sbjct: 625 GVVGAV----GTAGPSGPSGL-PGERGAAGIPG-GKGEKGE 659
>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 35.0 bits (79), Expect = 0.13
Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 28/198 (14%)
Query: 223 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSE-GP 281
G+ G R +PS+ + + W W + +L + + RLH P P
Sbjct: 67 GALGIRGIPSLCQSEGTRWSRRGRRWAER---CPPGVLGAGRSLRAQRSRLHSRPPPLSP 123
Query: 282 AHIPPGS-PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMS 340
P GS P SA AAG + EA + + GT + H L+ +
Sbjct: 124 LRKPGGSNQPRSAAAAGTQ---EACLQASGT----TRGWKYHALPLRLDPRS-------- 168
Query: 341 ISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQ-----PITPSHSKLTPKL 395
G AG AGS G GR A SR PR + Q P L P
Sbjct: 169 ---GHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTP 225
Query: 396 ETMTLGNRSHKAAEGSHY 413
G R+ K A G +
Sbjct: 226 SHTRRGQRTGKGARGPRF 243
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.7 bits (78), Expect = 0.17
Identities = 45/166 (27%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 234 APGDSSTWGTL-----VDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGS 288
APG G + P GP+ + E+ R G + HG+P + P G
Sbjct: 316 APGSKGEAGPTGPMGAMGPLGPRGMPGERG--RLGPQGAPGQRGAHGMPGKPGPMGPLGI 373
Query: 289 PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIH-----------MKSCFLEDATIGNSN 337
P S P EA P+ PEG QR + D T G
Sbjct: 374 PGSSGFPGNPGMKGEAG-PTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKG 432
Query: 338 KMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQP 383
SPG +GP G AG G PG P + + P D G P
Sbjct: 433 PTG-SPGTSGPPGSAGP-PGSPGPQGSTGPQGIRGQ---PGDPGVP 473
>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 34.7 bits (78), Expect = 0.17
Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 28/198 (14%)
Query: 223 GSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSE-GP 281
G+ G R +PS+ + + W W + +L + + RLH P P
Sbjct: 67 GALGIRGIPSLCQSEGTRWSRRGRRWAER---CPPGVLGAGRSLRAQRSRLHSRPPPLSP 123
Query: 282 AHIPPGS-PPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMS 340
P GS P SA AAG + EA + + GT + H L+ +
Sbjct: 124 LRKPGGSNQPRSAAAAG---THEACLQASGT----TRGWKYHALPLRLDPRS-------- 168
Query: 341 ISPGVAGPGGVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQ-----PITPSHSKLTPKL 395
G AG AGS G GR A SR PR + Q P L P
Sbjct: 169 ---GHAGSALKAGSCPRLGGGGRGRGEAGAPSRFWLPRSLQQLLPNEPRNADVQTLHPTP 225
Query: 396 ETMTLGNRSHKAAEGSHY 413
G R+ K A G +
Sbjct: 226 SHTRRGQRTGKGARGPRF 243
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 34.3 bits (77), Expect = 0.22
Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)
Query: 247 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 306
P P H + +R L H+ H S P HI P PP P A A
Sbjct: 15 PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 71
Query: 307 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 361
G EG AQ + G GP G A SG G P
Sbjct: 72 SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 121
Query: 362 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 411
A R T + PR I P T S + P++ + G R S A +GS
Sbjct: 122 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 175
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 34.3 bits (77), Expect = 0.22
Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)
Query: 247 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 306
P P H + +R L H+ H S P HI P PP P A A
Sbjct: 33 PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 89
Query: 307 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 361
G EG AQ + G GP G A SG G P
Sbjct: 90 SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 139
Query: 362 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 411
A R T + PR I P T S + P++ + G R S A +GS
Sbjct: 140 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 193
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 34.3 bits (77), Expect = 0.22
Identities = 47/176 (26%), Positives = 57/176 (32%), Gaps = 26/176 (14%)
Query: 247 PWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSEGPAHIPPGSPPVSATAAGPEASFEARI 306
P P H + +R L H+ H S P HI P PP P A A
Sbjct: 33 PANPAPFHTPR---KRHPLSHTPHATAHPPSSPPPLHITPVLPPTFPGTQPPRALRLAEG 89
Query: 307 PSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGP-----GGVAGSGEGEPGE 361
G EG AQ + G GP G A SG G P
Sbjct: 90 SGEGKQEEGRRAQARPRPL----------RPPWEVRGGARGPCSAPVGSRASSGPGLPSA 139
Query: 362 DAGRRPADTQSRSHFPRDIGQPITPSHS-----KLTPKLETMTLGNR-SHKAAEGS 411
A R T + PR I P T S + P++ + G R S A +GS
Sbjct: 140 AAARPARKTLTCQ--PRSIESPATASSAGCGSGPRVPQVRLLGPGGRPSSPARDGS 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,438,986
Number of Sequences: 37866
Number of extensions: 1128411
Number of successful extensions: 5284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 5017
Number of HSP's gapped (non-prelim): 478
length of query: 428
length of database: 18,247,518
effective HSP length: 105
effective length of query: 323
effective length of database: 14,271,588
effective search space: 4609722924
effective search space used: 4609722924
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.