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Search of human proteins with 237858795
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2
[Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2 [Ho... 261 7e-71
gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Ho... 160 2e-40
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho... 158 1e-39
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.065
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.065
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.065
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 31 0.25
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 31 0.25
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 31 0.25
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 30 0.32
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 30 0.55
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 30 0.55
gi|34577114 cytomatrix protein p110 [Homo sapiens] 30 0.55
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 29 0.72
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 29 0.72
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 29 0.72
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens] 29 0.72
gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens] 29 0.94
gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens] 29 0.94
gi|145275213 coagulation factor XII precursor [Homo sapiens] 29 0.94
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 29 0.94
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 29 0.94
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 29 0.94
gi|208431778 phosphatidylinositol-4-phosphate 5-kinase, type I, ... 29 0.94
gi|208431774 phosphatidylinositol-4-phosphate 5-kinase, type I, ... 29 0.94
gi|4505815 phosphatidylinositol-4-phosphate 5-kinase, type I, al... 29 0.94
gi|104294874 zinc finger protein 393 [Homo sapiens] 29 0.94
gi|7662284 microtubule associated monoxygenase, calponin and LIM... 29 0.94
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 28 1.6
gi|34485720 echinoderm microtubule associated protein like 5 [Ho... 28 1.6
>gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2 [Homo
sapiens]
Length = 120
Score = 261 bits (668), Expect = 7e-71
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLTVHL 120
KWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLTVHL
Sbjct: 61 KWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLTVHL 120
>gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3
[Homo sapiens]
Length = 105
Score = 160 bits (406), Expect = 2e-40
Identities = 74/76 (97%), Positives = 74/76 (97%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAVTTPR 76
KWTEPYCVIAAVT R
Sbjct: 61 KWTEPYCVIAAVTVLR 76
>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1
[Homo sapiens]
Length = 165
Score = 158 bits (399), Expect = 1e-39
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 61 KWTEPYCVIAAV 72
KWTEPYCVIAAV
Sbjct: 61 KWTEPYCVIAAV 72
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 26 RDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPAF-----P 80
RDP + D R VC + + +RC + E CV AV P A P
Sbjct: 1424 RDPRAASCRDVPRGRSCVPVCPTPQVLD-EVTQRCVYLED-CVEPAVWVPTEALGNETLP 1481
Query: 81 VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLT 117
P ++ P L Q S P RP +P P T
Sbjct: 1482 PSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTT 1518
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 26 RDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPAF-----P 80
RDP + D R VC + + +RC + E CV AV P A P
Sbjct: 1424 RDPRAASCRDVPRGRSCVPVCPTPQVLD-EVTQRCVYLED-CVEPAVWVPTEALGNETLP 1481
Query: 81 VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLT 117
P ++ P L Q S P RP +P P T
Sbjct: 1482 PSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTT 1518
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 26 RDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPAF-----P 80
RDP + D R VC + + +RC + E CV AV P A P
Sbjct: 1424 RDPRAASCRDVPRGRSCVPVCPTPQVLD-EVTQRCVYLED-CVEPAVWVPTEALGNETLP 1481
Query: 81 VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQLT 117
P ++ P L Q S P RP +P P T
Sbjct: 1482 PSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTT 1518
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 958 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 995
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 24 RQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYC 67
+Q + E Q DE + WC C++E F C C W YC
Sbjct: 983 KQLELEKQQAVDETKKKQWCANCKKEAIFYC-----C-WNTSYC 1020
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
Query: 61 KWTEPYCVIAAV 72
+ C+ ++
Sbjct: 49 PYHIRRCMTISI 60
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 57 PRRCKWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQL 116
P+ K PY V+ + RPA +RP E H P PP P P
Sbjct: 15 PKIYKQRSPYSVLKTFPSKRPALAKRYERPTLVEL--------PHVRAPPPPPPPFAPHA 66
Query: 117 TVHL 120
V +
Sbjct: 67 AVSI 70
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 57 PRRCKWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQL 116
P+ K PY V+ + RPA +RP E H P PP P P
Sbjct: 15 PKIYKQRSPYSVLKTFPSKRPALAKRYERPTLVEL--------PHVRAPPPPPPPFAPHA 66
Query: 117 TVHL 120
V +
Sbjct: 67 AVSI 70
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 82 HMDRPYHAEASPSLKQHSTHRPGPRPPD 109
H +H SP QHS HRP P D
Sbjct: 924 HHHHHHHHHRSPGRSQHSNHRPSPDQDD 951
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 58 RRCKWTEPYCVIAAVTTPRPAF-----PVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPL 112
+RC + E CV AV P A P P ++ P L Q S P RP +P
Sbjct: 1383 QRCVYLED-CVEPAVWVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPA 1441
Query: 113 VPQLT 117
P T
Sbjct: 1442 APLTT 1446
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 58 RRCKWTEPYCVIAAVTTPRPAF-----PVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPL 112
+RC + E CV AV P A P P ++ P L Q S P RP +P
Sbjct: 1383 QRCVYLED-CVEPAVWVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPA 1441
Query: 113 VPQLT 117
P T
Sbjct: 1442 APLTT 1446
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 58 RRCKWTEPYCVIAAVTTPRPAF-----PVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPL 112
+RC + E CV AV P A P P ++ P L Q S P RP +P
Sbjct: 1383 QRCVYLED-CVEPAVWVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPA 1441
Query: 113 VPQLT 117
P T
Sbjct: 1442 APLTT 1446
>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 63 TEP----YCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSP 111
TEP Y V AV P P+ R Y + S TH PR P SP
Sbjct: 333 TEPGPPGYSVSPAVPGRSPGLPIRSARRYPRSPARSPATGRTHSSPPRAPSSP 385
>gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 VWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPA 78
VWC+VC+ E + C + + + + A++TTP+PA
Sbjct: 114 VWCYVCDNEVQY-CSSNQLGQVVDYVRKQASITTPKPA 150
>gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 VWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPA 78
VWC+VC+ E + C + + + + A++TTP+PA
Sbjct: 114 VWCYVCDNEVQY-CSSNQLGQVVDYVRKQASITTPKPA 150
>gi|145275213 coagulation factor XII precursor [Homo sapiens]
Length = 615
Score = 28.9 bits (63), Expect = 0.94
Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 33 RTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPAFPVHMDRP-YHAEA 91
R + D R WC V R+ R W YC +A TP A P P H
Sbjct: 267 RNPDNDIRPWCFVLNRD---------RLSW--EYCDLAQCQTPTQAAPPTPVSPRLHVPL 315
Query: 92 SPSLKQHSTHRPGPRPPDSPLVP 114
P+ +P R P P
Sbjct: 316 MPAQPAPPKPQPTTRTPPQSQTP 338
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVTTP 75
CHVC C++ C T+ YCVI T+P
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRATSP 53
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVTTP 75
CHVC C++ C T+ YCVI T+P
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRATSP 53
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 28.9 bits (63), Expect = 0.94
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 43 CHVCERENTFECQNPRRCKWTEPYCVIAAVTTP 75
CHVC C++ C T+ YCVI T+P
Sbjct: 23 CHVCCGHE--HCESLVECAPTDKYCVITRATSP 53
>gi|208431778 phosphatidylinositol-4-phosphate 5-kinase, type I,
alpha isoform 1 [Homo sapiens]
Length = 562
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 70 AAVTTPRPAFP-VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLV 113
A VTT P VH+ RP +P L++ S P P P SPLV
Sbjct: 493 AQVTTKAEVEPGVHLGRPDVLPQTPPLEEISEGSPIPDPSFSPLV 537
>gi|208431774 phosphatidylinositol-4-phosphate 5-kinase, type I,
alpha isoform 3 [Homo sapiens]
Length = 522
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 70 AAVTTPRPAFP-VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLV 113
A VTT P VH+ RP +P L++ S P P P SPLV
Sbjct: 453 AQVTTKAEVEPGVHLGRPDVLPQTPPLEEISEGSPIPDPSFSPLV 497
>gi|4505815 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha
isoform 2 [Homo sapiens]
Length = 549
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 70 AAVTTPRPAFP-VHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLV 113
A VTT P VH+ RP +P L++ S P P P SPLV
Sbjct: 480 AQVTTKAEVEPGVHLGRPDVLPQTPPLEEISEGSPIPDPSFSPLV 524
>gi|104294874 zinc finger protein 393 [Homo sapiens]
Length = 389
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 44 HVCERENTFECQNPRRCKWTEPYCVIAAVTTPRPAFPVHMD-RPYHAEA-------SPSL 95
H+ + + P C W R VH RPY + S L
Sbjct: 299 HLVSHQRKHTGERPYSCNWESCSWSFFRSDELRRHMRVHTRYRPYKCDQCSREFMRSDHL 358
Query: 96 KQHS-THRPGPRPPDS 110
KQH THRPGP P +
Sbjct: 359 KQHQKTHRPGPSDPQA 374
>gi|7662284 microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Homo sapiens]
Length = 1124
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 47 ERENTFECQN-PRRCKWTEPYCVIAAVTTPRPAFPVHMDRP 86
E E T++ Q PRR TE C +AA+ T + PVH P
Sbjct: 1077 EEEATWQEQEAPRRDTPTESSCAVAAIGTLEGSPPVHFSLP 1117
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 57 PRRCKWTEPYCVIAAVTTPRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQL 116
P R TEP + TP R +PS Q ST P PPD P P
Sbjct: 1118 PERSHLTEPSSSGGCLVTP--------SRRETPSPTPSYGQQSTATLTPSPPDPPQPPTD 1169
Query: 117 TVHL 120
HL
Sbjct: 1170 MPHL 1173
>gi|34485720 echinoderm microtubule associated protein like 5 [Homo
sapiens]
Length = 1977
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 15 VWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIAAVTT 74
VWT+ R++ P DS+ +D E + ++ R + + Y + A T
Sbjct: 1265 VWTNEMEGYREKRPCDSEESDIDS--------EEDGGYDSDVTRENEIS--YTIRALSTN 1314
Query: 75 PRPAFPVHMDRPYHAEASPSLKQHSTHRPGPRPPDSPLVPQ 115
RP + +P+ + PS+ + G RPP S PQ
Sbjct: 1315 IRPMLGI---KPHLQQKEPSIDERQGVVRGSRPPVSRAPPQ 1352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,394,562
Number of Sequences: 37866
Number of extensions: 338958
Number of successful extensions: 1479
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 122
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.