BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapiens] (167 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 327 4e-90 gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 248 1e-66 gi|237858662 hypothetical protein LOC123207 isoform a [Homo sapi... 244 2e-65 gi|237858670 hypothetical protein LOC123207 isoform e [Homo sapi... 244 3e-65 gi|237858666 hypothetical protein LOC123207 isoform c [Homo sapi... 242 9e-65 gi|62243734 signal transducing adaptor family member 2 isoform 1... 59 1e-09 gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 56 1e-08 gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 56 1e-08 gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 56 1e-08 gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 55 3e-08 gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 55 3e-08 gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 54 5e-08 gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 54 5e-08 gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 53 1e-07 gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 50 7e-07 gi|224494572 hypothetical protein LOC401082 [Homo sapiens] 49 2e-06 gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 49 2e-06 gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] 49 2e-06 gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 49 3e-06 gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 49 3e-06 gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 49 3e-06 gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 49 3e-06 gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 48 3e-06 gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 48 3e-06 gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 48 3e-06 gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 46 2e-05 gi|226371669 discs large homolog 7 isoform b [Homo sapiens] 45 3e-05 gi|148839316 NIMA-related kinase 4 [Homo sapiens] 44 6e-05 gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 42 2e-04 gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi... 42 2e-04 >gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapiens] Length = 167 Score = 327 bits (837), Expect = 4e-90 Identities = 167/167 (100%), Positives = 167/167 (100%) Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 Query: 121 DKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 DKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL Sbjct: 121 DKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 >gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapiens] Length = 167 Score = 248 bits (634), Expect = 1e-66 Identities = 134/167 (80%), Positives = 135/167 (80%), Gaps = 21/167 (12%) Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 Query: 121 DKTG---------------------SCYIAQAGLELLASSDLPASAS 146 DK G +A L LL SS PASAS Sbjct: 121 DKVGLALFFFFLRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167 >gi|237858662 hypothetical protein LOC123207 isoform a [Homo sapiens] Length = 153 Score = 244 bits (624), Expect = 2e-65 Identities = 127/139 (91%), Positives = 131/139 (94%), Gaps = 2/139 (1%) Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 Query: 121 DKTGSCYIAQAGLELLASS 139 DK G + ++LLAS+ Sbjct: 121 DKGGKS--REKVVKLLAST 137 >gi|237858670 hypothetical protein LOC123207 isoform e [Homo sapiens] Length = 149 Score = 244 bits (622), Expect = 3e-65 Identities = 126/134 (94%), Positives = 126/134 (94%), Gaps = 2/134 (1%) Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 Query: 121 DKTGSCYIAQAGLE 134 DK CY LE Sbjct: 121 DKL--CYSIPQQLE 132 >gi|237858666 hypothetical protein LOC123207 isoform c [Homo sapiens] Length = 153 Score = 242 bits (618), Expect = 9e-65 Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK Sbjct: 1 MLRLRSGLRHLRATPNTRGSARLLCAEMPKKAGATTKGKSQSKEPERPLPPLGPVAVDPK 60 Query: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL Sbjct: 61 GCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVL 120 Query: 121 DK 122 DK Sbjct: 121 DK 122 >gi|62243734 signal transducing adaptor family member 2 isoform 1 [Homo sapiens] Length = 449 Score = 59.3 bits (142), Expect = 1e-09 Identities = 30/39 (76%), Positives = 32/39 (82%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPAL 162 G ++AQAGLELL SSD P SASQSAGITGVSHHT P L Sbjct: 361 GFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPHL 399 >gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] Length = 402 Score = 56.2 bits (134), Expect = 1e-08 Identities = 30/50 (60%), Positives = 36/50 (72%) Query: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 VVL +T ++ QAGLELL S D P SASQSAGITGVSH +P L ++ L Sbjct: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRL 400 >gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] Length = 402 Score = 56.2 bits (134), Expect = 1e-08 Identities = 30/50 (60%), Positives = 36/50 (72%) Query: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 VVL +T ++ QAGLELL S D P SASQSAGITGVSH +P L ++ L Sbjct: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRL 400 >gi|28212280 hypothetical protein LOC283579 [Homo sapiens] Length = 122 Score = 56.2 bits (134), Expect = 1e-08 Identities = 29/37 (78%), Positives = 31/37 (83%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160 GS Y AQAGLELL SS+ PASASQSAGITGVSH +P Sbjct: 32 GSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68 >gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo sapiens] Length = 402 Score = 55.1 bits (131), Expect = 3e-08 Identities = 29/50 (58%), Positives = 36/50 (72%) Query: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 VVL +T ++ QAGLELL S D P SASQSAGITGV+H +P L ++ L Sbjct: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRL 400 >gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] Length = 402 Score = 55.1 bits (131), Expect = 3e-08 Identities = 29/50 (58%), Positives = 36/50 (72%) Query: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167 VVL +T ++ QAGLELL S D P SASQSAGITGV+H +P L ++ L Sbjct: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRL 400 >gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] Length = 606 Score = 54.3 bits (129), Expect = 5e-08 Identities = 28/39 (71%), Positives = 30/39 (76%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPAL 162 G + QA LELL SSDLPASASQSAGITGV+H QP L Sbjct: 78 GFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGL 116 >gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] Length = 629 Score = 54.3 bits (129), Expect = 5e-08 Identities = 28/39 (71%), Positives = 30/39 (76%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPAL 162 G + QA LELL SSDLPASASQSAGITGV+H QP L Sbjct: 78 GFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGL 116 >gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] Length = 586 Score = 52.8 bits (125), Expect = 1e-07 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 68 HAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKTGSCY 127 H+ G+ + T T E ++ P + E +++ L+ L+ T S + Sbjct: 54 HSSSGTLSSLETVSTQELYSIPEDQEPEDQEPEEPTPAPWARLWALQDGFANLE-TESGH 112 Query: 128 IAQAGLELLASSDLPASASQSAGITGVSHHTQPALLL 164 + Q+ LELL SSD PASASQSAGI GV HH +P L Sbjct: 113 VTQSDLELLLSSDPPASASQSAGIRGVRHHPRPVCSL 149 >gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] Length = 858 Score = 50.4 bits (119), Expect = 7e-07 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Query: 101 AELCRYLSKVLELRKSDVVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160 AE R + E +++V K SC +AQAGLELL SS A ASQSAGITG+SH T Sbjct: 676 AEAGRSRGQEFETSLANIV--KPQSCCVAQAGLELLVSSSPSALASQSAGITGMSHCTWL 733 Query: 161 ALLLI 165 +L + Sbjct: 734 VVLFL 738 >gi|224494572 hypothetical protein LOC401082 [Homo sapiens] Length = 95 Score = 48.9 bits (115), Expect = 2e-06 Identities = 24/37 (64%), Positives = 28/37 (75%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160 GS Y+AQAGLELL SS+ P SA Q+AG TG+ H T P Sbjct: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52 >gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] Length = 1318 Score = 48.9 bits (115), Expect = 2e-06 Identities = 25/38 (65%), Positives = 29/38 (76%) Query: 122 KTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 +TGS Y+AQAGLE LAS D ASAS +AGITG H T+ Sbjct: 42 ETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHRTR 79 >gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] Length = 176 Score = 48.9 bits (115), Expect = 2e-06 Identities = 24/34 (70%), Positives = 27/34 (79%) Query: 127 YIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160 Y+AQA LELL SS+ PASASQS GITG SH +P Sbjct: 5 YVAQADLELLTSSNPPASASQSTGITGGSHRARP 38 >gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo sapiens] Length = 299 Score = 48.5 bits (114), Expect = 3e-06 Identities = 23/35 (65%), Positives = 27/35 (77%) Query: 130 QAGLELLASSDLPASASQSAGITGVSHHTQPALLL 164 QAG++LL +SDLP ASQS ITGVSHH QP L+ Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQPNPLI 221 >gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo sapiens] Length = 299 Score = 48.5 bits (114), Expect = 3e-06 Identities = 23/35 (65%), Positives = 27/35 (77%) Query: 130 QAGLELLASSDLPASASQSAGITGVSHHTQPALLL 164 QAG++LL +SDLP ASQS ITGVSHH QP L+ Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQPNPLI 221 >gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo sapiens] Length = 299 Score = 48.5 bits (114), Expect = 3e-06 Identities = 23/35 (65%), Positives = 27/35 (77%) Query: 130 QAGLELLASSDLPASASQSAGITGVSHHTQPALLL 164 QAG++LL +SDLP ASQS ITGVSHH QP L+ Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQPNPLI 221 >gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens] Length = 1079 Score = 48.5 bits (114), Expect = 3e-06 Identities = 25/38 (65%), Positives = 29/38 (76%) Query: 122 KTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 +TG ++ QA LELL S L ASASQSAGITGVSHH + Sbjct: 1042 ETGFHHVGQACLELLTSGGLLASASQSAGITGVSHHAR 1079 >gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] Length = 142 Score = 48.1 bits (113), Expect = 3e-06 Identities = 24/36 (66%), Positives = 27/36 (75%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 G ++ QAGLELL SSD P SASQ+A ITGVSH Q Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37 >gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] Length = 142 Score = 48.1 bits (113), Expect = 3e-06 Identities = 24/36 (66%), Positives = 27/36 (75%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 G ++ QAGLELL SSD P SASQ+A ITGVSH Q Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37 >gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] Length = 142 Score = 48.1 bits (113), Expect = 3e-06 Identities = 24/36 (66%), Positives = 27/36 (75%) Query: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 G ++ QAGLELL SSD P SASQ+A ITGVSH Q Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37 >gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [Homo sapiens] Length = 759 Score = 45.8 bits (107), Expect = 2e-05 Identities = 27/56 (48%), Positives = 34/56 (60%) Query: 97 GEANAELCRYLSKVLELRKSDVVLDKTGSCYIAQAGLELLASSDLPASASQSAGIT 152 G +A +L + + V L + G ++ QAGLELL SSDLP SASQSAGIT Sbjct: 13 GAISAHCSLHLPDSSDFQLIFVFLVEMGFHHVGQAGLELLISSDLPTSASQSAGIT 68 >gi|226371669 discs large homolog 7 isoform b [Homo sapiens] Length = 842 Score = 45.1 bits (105), Expect = 3e-05 Identities = 22/37 (59%), Positives = 27/37 (72%) Query: 119 VLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVS 155 +LD GSCY+A+AGLE+L SSD SAS+ AG T S Sbjct: 803 LLDSVGSCYVARAGLEVLGSSDPTTSASRVAGTTARS 839 >gi|148839316 NIMA-related kinase 4 [Homo sapiens] Length = 841 Score = 43.9 bits (102), Expect = 6e-05 Identities = 21/32 (65%), Positives = 24/32 (75%) Query: 128 IAQAGLELLASSDLPASASQSAGITGVSHHTQ 159 +A + L LL SSD PASAS+ AGITGV HH Q Sbjct: 471 LAHSNLRLLGSSDSPASASRVAGITGVCHHAQ 502 >gi|118442834 RPGRIP1-like isoform a [Homo sapiens] Length = 1315 Score = 42.4 bits (98), Expect = 2e-04 Identities = 21/37 (56%), Positives = 22/37 (59%) Query: 125 SCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPA 161 S A L SSD PASASQ GITG HHTQP+ Sbjct: 1110 SAISAHCNFRLPGSSDFPASASQVDGITGACHHTQPS 1146 >gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapiens] Length = 276 Score = 42.0 bits (97), Expect = 2e-04 Identities = 22/31 (70%), Positives = 25/31 (80%) Query: 125 SCYIAQAGLELLASSDLPASASQSAGITGVS 155 S +IAQ GL++L S D PASA QSAGITGVS Sbjct: 157 SRHIAQTGLKVLGSRDPPASAFQSAGITGVS 187 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.128 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,440,841 Number of Sequences: 37866 Number of extensions: 266310 Number of successful extensions: 1125 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 961 Number of HSP's gapped (non-prelim): 191 length of query: 167 length of database: 18,247,518 effective HSP length: 95 effective length of query: 72 effective length of database: 14,650,248 effective search space: 1054817856 effective search space used: 1054817856 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.