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Search of human proteins with 237858654
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858654 ring finger protein 170 isoform a [Homo sapiens] 523 e-149
gi|237858650 ring finger protein 170 isoform a [Homo sapiens] 523 e-149
gi|237858658 ring finger protein 170 isoform c [Homo sapiens] 364 e-101
gi|237858656 ring finger protein 170 isoform b [Homo sapiens] 275 3e-74
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 51 1e-06
gi|15208660 tripartite motif protein 21 [Homo sapiens] 47 1e-05
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 47 1e-05
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 47 2e-05
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 47 2e-05
gi|22749269 ring finger protein 129 [Homo sapiens] 47 2e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 47 2e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 46 3e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 46 3e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 46 3e-05
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 46 4e-05
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 46 4e-05
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 46 4e-05
gi|37595555 ring finger protein 125 [Homo sapiens] 46 4e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 45 5e-05
gi|5730009 ret finger protein [Homo sapiens] 45 5e-05
gi|37622899 ring finger protein 137 [Homo sapiens] 45 6e-05
gi|4557841 recombination activating gene 1 [Homo sapiens] 45 8e-05
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 45 8e-05
gi|34452681 ring finger protein 10 [Homo sapiens] 45 8e-05
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 45 8e-05
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 44 1e-04
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 44 1e-04
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 44 1e-04
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 44 1e-04
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 44 1e-04
>gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 523 bits (1348), Expect = e-149
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 180
LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL
Sbjct: 121 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 180
Query: 181 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 240
LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL
Sbjct: 181 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 240
Query: 241 LIYISIMYREVITQRLTR 258
LIYISIMYREVITQRLTR
Sbjct: 241 LIYISIMYREVITQRLTR 258
>gi|237858650 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 523 bits (1348), Expect = e-149
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 180
LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL
Sbjct: 121 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 180
Query: 181 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 240
LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL
Sbjct: 181 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 240
Query: 241 LIYISIMYREVITQRLTR 258
LIYISIMYREVITQRLTR
Sbjct: 241 LIYISIMYREVITQRLTR 258
>gi|237858658 ring finger protein 170 isoform c [Homo sapiens]
Length = 174
Score = 364 bits (934), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 85 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 144
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD
Sbjct: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 60
Query: 145 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 204
QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL
Sbjct: 61 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 120
Query: 205 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 258
CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR
Sbjct: 121 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 174
>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
Length = 200
Score = 275 bits (703), Expect = 3e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQT 132
LGAISCPICRQT
Sbjct: 121 LGAISCPICRQT 132
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 50.8 bits (120), Expect = 1e-06
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 131
CPIC V TNCGHLFC C+ + S G CP+CR+
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRK 58
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 73 APAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
A AA + ++ CPICL PV CGH FC CI + G G++ CP+CRQ
Sbjct: 2 ASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGG---GSV-CPVCRQR 57
Query: 133 VTL 135
L
Sbjct: 58 FLL 60
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 81 FYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 131
F ++ CPICLH PV+ C H FC CI W S G + CP C Q
Sbjct: 9 FEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDS--GLVRCPECNQ 57
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 75 AATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
AA + + C +CL PV CGH FC ACI +W CP+CR+T
Sbjct: 17 AAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT 72
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 75 AATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
AA + + C +CL PV CGH FC ACI +W CP+CR+T
Sbjct: 17 AAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT 72
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 46.6 bits (109), Expect = 2e-05
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 130
CPICL PV NCGH FC +C+ W+ CP+CR
Sbjct: 16 CPICLEYLKDPVTINCGHNFCRSCLSVSWK--DLDDTFPCPVCR 57
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRY------GSWLGAISCPICRQ 131
CPICL PV CGH FC AC+ A W + G GA CP+C++
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQE 59
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 45.8 bits (107), Expect = 4e-05
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 130
++ CPICL PV CGH FC C+ W G G CP CR
Sbjct: 9 ELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECR 53
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 45.8 bits (107), Expect = 4e-05
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 130
++ CPICL PV CGH FC C+ W G G CP CR
Sbjct: 9 ELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECR 53
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 45.8 bits (107), Expect = 4e-05
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
++ C ICL PV C H FC CI +W GA CP CR+T
Sbjct: 8 ELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRT 56
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 45.8 bits (107), Expect = 4e-05
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 83 TDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 130
T C +CL PV T CGH+FC +CI + W +CP CR
Sbjct: 33 TSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW----TCPYCR 76
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 45.4 bits (106), Expect = 5e-05
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWL--GAISCPICR 130
++ CPICL + P+ +CGH FC ACI A + + G SCP+C+
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 45.4 bits (106), Expect = 5e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
CP+CL + P+ +CGH C AC+ W G+ +SCP CR+T
Sbjct: 16 CPVCLQYFAEPMMLDCGHNICCACLARCW--GTAETNVSCPQCRET 59
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 45.1 bits (105), Expect = 6e-05
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 74 PAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRY--GSWLGAISCPICRQ 131
P A + ++ CPIC+ P+ +CGH FC +C+ W S +CP+CR
Sbjct: 3 PTALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRA 62
Query: 132 TV 133
V
Sbjct: 63 PV 64
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 44.7 bits (104), Expect = 8e-05
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 79 QQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWR-YGSWLGAISCPICR 130
+ F + C IC H + PVETNC H+FC CI+ + GS+ CP CR
Sbjct: 285 EHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSY-----CPSCR 332
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 44.7 bits (104), Expect = 8e-05
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 131
C ICL + PV T+CGH FC CI W G G +CP CR+
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCW--GQPEGPYACPECRE 58
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 44.7 bits (104), Expect = 8e-05
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICRQTV 133
CPICL+ + T CGH+FC ACI+ Y +W CPIC +V
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSV 270
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 44.7 bits (104), Expect = 8e-05
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 71 QDAPAATRQQFYT--DMYCPICLHQASFPVETN-CGHLFCGACIIAYWRYGSWLGAISCP 127
+D AAT YT D YCP+C PV T C H+FC C + R CP
Sbjct: 3 EDLSAATS---YTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRE----SGAHCP 55
Query: 128 ICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI 174
+CR VT + + D+ + R+FSG R ++I
Sbjct: 56 LCRGNVT---------RRERACPERALDLENIMRKFSGSCRCCAKQI 93
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 134
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens]
Length = 699
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 134
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens]
Length = 759
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 134
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 44.3 bits (103), Expect = 1e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 134
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTV 133
++ C ICL S PV T CGH FC C++ W + +SCP C +T+
Sbjct: 13 ELTCFICLDYFSSPVTTECGHSFCLVCLLRSWEEHN--TPLSCPECWRTL 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.144 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,672,855
Number of Sequences: 37866
Number of extensions: 353633
Number of successful extensions: 1609
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 287
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.