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Search of human proteins with 237648959
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237648959 thioredoxin domain containing 16 isoform 1 [Homo
sapiens]
(825 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237648959 thioredoxin domain containing 16 isoform 1 [Homo sa... 1635 0.0
gi|237648961 thioredoxin domain containing 16 isoform 2 [Homo sa... 1620 0.0
gi|21361657 protein disulfide-isomerase A3 precursor [Homo sapiens] 62 3e-09
gi|4758304 protein disulfide isomerase A4 [Homo sapiens] 52 2e-06
gi|20070125 prolyl 4-hydroxylase, beta subunit precursor [Homo s... 47 6e-05
gi|42794771 thioredoxin domain containing 5 isoform 1 precursor ... 47 9e-05
gi|224493972 thioredoxin domain containing 5 isoform 3 [Homo sap... 46 1e-04
gi|5031973 protein disulfide isomerase A6 [Homo sapiens] 43 0.001
gi|54633317 thioredoxin domain containing 11 [Homo sapiens] 39 0.015
gi|24308127 DnaJ (Hsp40) homolog, subfamily C, member 10 [Homo s... 38 0.044
gi|5803121 protein disulfide isomerase A5 [Homo sapiens] 35 0.22
gi|52487191 thioredoxin domain containing 4 (endoplasmic reticul... 35 0.22
gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo sap... 32 1.8
gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sap... 32 1.8
gi|115430241 SCY1-like 1 isoform A [Homo sapiens] 32 2.4
gi|4826876 osteomodulin [Homo sapiens] 32 2.4
gi|33356172 nibrin [Homo sapiens] 32 3.1
gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo sa... 31 5.4
gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo sapi... 31 5.4
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens] 30 7.0
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 30 7.0
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 30 7.0
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens] 30 7.0
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 30 7.0
gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens] 30 7.0
gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens] 30 7.0
gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens] 30 7.0
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [... 30 7.0
gi|6912478 karyopherin alpha 6 [Homo sapiens] 30 9.1
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 9.1
>gi|237648959 thioredoxin domain containing 16 isoform 1 [Homo
sapiens]
Length = 825
Score = 1635 bits (4233), Expect = 0.0
Identities = 825/825 (100%), Positives = 825/825 (100%)
Query: 1 MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV 60
MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV
Sbjct: 1 MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV 60
Query: 61 FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF 120
FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF
Sbjct: 61 FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF 120
Query: 121 DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA 180
DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA
Sbjct: 121 DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA 180
Query: 181 FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI 240
FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI
Sbjct: 181 FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI 240
Query: 241 HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK 300
HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK
Sbjct: 241 HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK 300
Query: 301 AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE 360
AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE
Sbjct: 301 AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE 360
Query: 361 DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA 420
DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA
Sbjct: 361 DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA 420
Query: 421 VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA 480
VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA
Sbjct: 421 VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA 480
Query: 481 GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA 540
GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA
Sbjct: 481 GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA 540
Query: 541 KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ 600
KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ
Sbjct: 541 KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ 600
Query: 601 DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS 660
DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS
Sbjct: 601 DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS 660
Query: 661 FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL 720
FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL
Sbjct: 661 FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL 720
Query: 721 KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ 780
KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ
Sbjct: 721 KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ 780
Query: 781 HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN 825
HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN
Sbjct: 781 HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN 825
>gi|237648961 thioredoxin domain containing 16 isoform 2 [Homo
sapiens]
Length = 820
Score = 1620 bits (4195), Expect = 0.0
Identities = 820/825 (99%), Positives = 820/825 (99%), Gaps = 5/825 (0%)
Query: 1 MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV 60
MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV
Sbjct: 1 MFSGFNVFRVGISFVIMCIFYMPTVNSLPELSPQKYFSTLQPGKASLAYFCQADSPRTSV 60
Query: 61 FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF 120
FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF
Sbjct: 61 FLEELNEAVRPLQDYGISVAKVNCVKEEISRYCGKEKDLMKAYLFKGNILLREFPTDTLF 120
Query: 121 DVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA 180
DVNAIVAHVLF EVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA
Sbjct: 121 DVNAIVAHVLF-----EVKYITNLEDLQNIENALKGKANIIFSYVRAIGIPEHRAVMEAA 175
Query: 181 FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI 240
FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI
Sbjct: 176 FVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLNI 235
Query: 241 HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK 300
HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK
Sbjct: 236 HLFIKTMKAPLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGK 295
Query: 301 AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE 360
AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE
Sbjct: 296 AGVLLLLRDSLEVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDE 355
Query: 361 DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA 420
DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA
Sbjct: 356 DNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNATVMASDSIVLFYAGWQA 415
Query: 421 VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA 480
VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA
Sbjct: 416 VSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYA 475
Query: 481 GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA 540
GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA
Sbjct: 476 GMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSVSVLGLFSPTMKTA 535
Query: 541 KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ 600
KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ
Sbjct: 536 KEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQ 595
Query: 601 DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS 660
DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS
Sbjct: 596 DIVQIITDALLEMFPEITVENLPSYFRLQKPLLILFSDGTVNPQYKKAILTLVKQKYLDS 655
Query: 661 FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL 720
FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL
Sbjct: 656 FTPCWLNLKNTPVGRGILRAYFDPLPPLPLLVLVNLHSGGQVFAFPSDQAIIEENLVLWL 715
Query: 721 KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ 780
KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ
Sbjct: 716 KKLEAGLENHITILPAQEWKPPLPAYDFLSMIDAATSQRGTRKVPKCMKETDVQENDKEQ 775
Query: 781 HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN 825
HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN
Sbjct: 776 HEDKSAVRKEPIETLRIKHWNRSNWFKEAEKSFRRDKELGCSKVN 820
>gi|21361657 protein disulfide-isomerase A3 precursor [Homo sapiens]
Length = 505
Score = 61.6 bits (148), Expect = 3e-09
Identities = 65/282 (23%), Positives = 120/282 (42%), Gaps = 27/282 (9%)
Query: 390 LELTVELTEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINC 449
LELT + E + T A +V F+A W Y A +LKG + L +++C
Sbjct: 28 LELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVDC 85
Query: 450 ADWSDVCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFIQLNRISYPVNITSIQEA 509
++ C K V+ +P +K+++ GE +Y G + ++ L + + P ++ E
Sbjct: 86 TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVS--HLKKQAGPASVPLRTEE 143
Query: 510 EEYLSGELYKDLILYSSVSVLGLFSPTMKTAKEDFSEAGNYLKGYVITGIYSEEDVLLLS 569
E +K I S++G F + A +F +A + L+ ++ +V L
Sbjct: 144 E-------FKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRD---NYRFAHTNVESLV 193
Query: 570 TKYAASLPALLLAR--HTEGKIESIPLASTHAQ----DIVQIITDALLEMFPEITVENLP 623
+Y + ++L R H K E +A T + I + I + + + P +T +N
Sbjct: 194 NEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDN-- 251
Query: 624 SYFRLQKPLLILFSD-----GTVNPQYKKAILTLVKQKYLDS 660
K LLI + D Y + + +V +K+LD+
Sbjct: 252 KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDA 293
>gi|4758304 protein disulfide isomerase A4 [Homo sapiens]
Length = 645
Score = 52.0 bits (123), Expect = 2e-06
Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 345 SHVENNMHIEEIQEDEDNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELTEETFNAT 404
S+ EN + EE +E+ED+D E D++V+++ + L + F+
Sbjct: 32 SNRENAIEDEEEEEEEDDDEEEDDLEVKEENG----------------VLVLNDANFDNF 75
Query: 405 VMASDSIVL-FYAGWQAVSMAFLQSYIDVAVKLKGTSTML-LTRINCADWSDVCTKQNVT 462
V D+++L FYA W F Y +A LK + + +I+ S + ++ +V+
Sbjct: 76 VADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVS 135
Query: 463 EFPIIKMYKKGENPVSYAGMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLI 522
+P IK+ KKG+ V Y G E+++ ++ +S P + T E L+ E + +++
Sbjct: 136 GYPTIKILKKGQ-AVDYEGSRTQEEIV--AKVREVSQP-DWTPPPEVTLVLTKENFDEVV 191
Query: 523 LYSSVSVLGLFSP 535
+ + ++ ++P
Sbjct: 192 NDADIILVEFYAP 204
>gi|20070125 prolyl 4-hydroxylase, beta subunit precursor [Homo
sapiens]
Length = 508
Score = 47.4 bits (111), Expect = 6e-05
Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 411 IVLFYAGWQAVSMAFLQSYIDVAVKLKGT-STMLLTRINCADWSDVCTKQNVTEFPIIKM 469
+V FYA W A Y A KLK S + L +++ + SD+ + V +P IK
Sbjct: 45 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 104
Query: 470 YKKGE--NPVSYAGMLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLILYSSV 527
++ G+ +P Y +D++ + L + + P A G + L+ S V
Sbjct: 105 FRNGDTASPKEYTAGREADDIVNW--LKKRTGPA-------ATTLPDGAAAESLVESSEV 155
Query: 528 SVLGLFSPTMKTAKEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEG 587
+V+G F + + F +A + + GI S DV +KY ++L + +
Sbjct: 156 AVIGFFKDVESDSAKQFLQAAEAIDD-IPFGITSNSDVF---SKYQLDKDGVVLFKKFDE 211
Query: 588 KIESIPLASTHAQDIVQIITDALLEMFPEITVENLPSYF 626
+ ++++ I L + E T + P F
Sbjct: 212 GRNNFE-GEVTKENLLDFIKHNQLPLVIEFTEQTAPKIF 249
Score = 34.7 bits (78), Expect = 0.37
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 453 SDVCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFIQLNRISYPVNITSIQEAEEY 512
SDV +K + + ++ K E ++ G + E+LL FI+ N++ + T Q A +
Sbjct: 190 SDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE-QTAPKI 248
Query: 513 LSGELYKDLILY--SSVSVLGLFSPTMKTAKEDF 544
GE+ ++L+ SVS KTA E F
Sbjct: 249 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 282
>gi|42794771 thioredoxin domain containing 5 isoform 1 precursor
[Homo sapiens]
Length = 432
Score = 46.6 bits (109), Expect = 9e-05
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 397 TEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVKLKGT--STMLLTRINCADWSD 454
T + F + ++ V+F+A W ++ D+ K + + + +++C SD
Sbjct: 67 TADMFTHGIQSAAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSD 126
Query: 455 VCTKQNVTEFPIIKMYKKGENPVSYAG 481
VC+ Q V +P +K++K G+ V Y G
Sbjct: 127 VCSAQGVRGYPTLKLFKPGQEAVKYQG 153
Score = 46.2 bits (108), Expect = 1e-04
Identities = 21/99 (21%), Positives = 47/99 (47%)
Query: 395 ELTEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSD 454
EL+ F V D + F+A W A ++ +A+ L+ + T+ + +++C +
Sbjct: 193 ELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYE 252
Query: 455 VCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFIQ 493
+C+ V +P + ++ G+ Y G E L ++++
Sbjct: 253 LCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLESLREYVE 291
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 396 LTEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVK-LKGTSTMLLTRINCADWSD 454
LTE F+ T+ + + FYA W ++ +++ K G + + + ++C +
Sbjct: 327 LTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN 386
Query: 455 VCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFI 492
+C+K +V +P + +++ G+ ++G + L +F+
Sbjct: 387 ICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 424
>gi|224493972 thioredoxin domain containing 5 isoform 3 [Homo
sapiens]
Length = 324
Score = 46.2 bits (108), Expect = 1e-04
Identities = 21/99 (21%), Positives = 47/99 (47%)
Query: 395 ELTEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSD 454
EL+ F V D + F+A W A ++ +A+ L+ + T+ + +++C +
Sbjct: 85 ELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYE 144
Query: 455 VCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFIQ 493
+C+ V +P + ++ G+ Y G E L ++++
Sbjct: 145 LCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLESLREYVE 183
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 396 LTEETFNATVMASDSIVLFYAGWQAVSMAFLQSYIDVAVK-LKGTSTMLLTRINCADWSD 454
LTE F+ T+ + + FYA W ++ +++ K G + + + ++C +
Sbjct: 219 LTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN 278
Query: 455 VCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKFI 492
+C+K +V +P + +++ G+ ++G + L +F+
Sbjct: 279 ICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 316
Score = 38.9 bits (89), Expect = 0.020
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 444 LTRINCADWSDVCTKQNVTEFPIIKMYKKGENPVSYAG 481
+ +++C SDVC+ Q V +P +K++K G+ V Y G
Sbjct: 8 VAKVDCTAHSDVCSAQGVRGYPTLKLFKPGQEAVKYQG 45
>gi|5031973 protein disulfide isomerase A6 [Homo sapiens]
Length = 440
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 394 VELTEETFNATVMASDSI--VLFYAGWQAVSMAFLQSYIDVA--VKLKGTSTMLLTRINC 449
+ELT+++F+ V+ S+ + V FYA W + A VK + + L ++
Sbjct: 163 IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 222
Query: 450 ADWSDVCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLL 489
+ ++ + FP IK+++KGE+PV Y G D++
Sbjct: 223 TVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIV 262
Score = 33.1 bits (74), Expect = 1.1
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 394 VELTEETFNATVMASDS--IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCAD 451
+ELT FN V+ SDS +V FYA W + A LK + + ++
Sbjct: 28 IELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVDADK 85
Query: 452 WSDVCTKQNVTEFPIIKMYKKGEN-PVSYAG 481
+ + V FP IK++ +N P Y G
Sbjct: 86 HHSLGGQYGVQGFPTIKIFGSNKNRPEDYQG 116
>gi|54633317 thioredoxin domain containing 11 [Homo sapiens]
Length = 958
Score = 39.3 bits (90), Expect = 0.015
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 411 IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQ-NVTEFPIIKM 469
++ FYA W S+A A +L + +L INC C KQ + FP+I +
Sbjct: 129 LLFFYAPWCGQSIAARAEIEQAASRL--SDQVLFVAINCWWNQGKCRKQKHFFYFPVIYL 186
Query: 470 YKKGENPVSYAGMLGTEDLLKFIQLNRISYP-VNITSIQEAEEYLS 514
Y + P+ Y G + + KF++ R+ P + I S E ++LS
Sbjct: 187 YHRSFGPIEYKGPMSAVYIEKFVR--RVMKPLLYIPSQSELLDFLS 230
>gi|24308127 DnaJ (Hsp40) homolog, subfamily C, member 10 [Homo
sapiens]
Length = 793
Score = 37.7 bits (86), Expect = 0.044
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 391 ELTVELTEETFNATVMASDS--IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRIN 448
+++ +LT +TF+ V+ + ++ FYA W F + +A +KG + +++
Sbjct: 670 QVSTDLTPQTFSEKVLQGKNHWVIDFYAPWCGPCQNFAPEFELLARMIKGK--VKAGKVD 727
Query: 449 CADWSDVCTKQNVTEFPIIKMY 470
C ++ C K + +P +K Y
Sbjct: 728 CQAYAQTCQKAGIRAYPTVKFY 749
Score = 35.4 bits (80), Expect = 0.22
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 394 VELTEETFNATVMASDS-IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADW 452
+ L F+A V + + V FY+ + ++ D A ++ G + + +NC D
Sbjct: 132 ITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGL--LRIGAVNCGDD 189
Query: 453 SDVCTKQNVTEFPIIKMYKKGENPVSYAGMLGTEDLLKF 491
+C + V +P + +++ G PV Y G E L+ F
Sbjct: 190 RMLCRMKGVNSYPSLFIFRSGMAPVKYHGDRSKESLVSF 228
Score = 30.8 bits (68), Expect = 5.4
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 394 VELTEETFNATVMASDS----IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINC 449
V LT TFN V +V FY+ W + + +A L G + I+C
Sbjct: 559 VSLTPTTFNELVTQRKHNEVWMVDFYSPWCHPCQVLMPEWKRMARTLTGLINV--GSIDC 616
Query: 450 ADWSDVCTKQNVTEFPIIKMYKKGEN 475
+ C ++NV +P I+ + N
Sbjct: 617 QQYHSFCAQENVQRYPEIRFFPPKSN 642
>gi|5803121 protein disulfide isomerase A5 [Homo sapiens]
Length = 519
Score = 35.4 bits (80), Expect = 0.22
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 411 IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIKMY 470
+++FYA W ++ + + A +L+G + + + +++ ++ + +V FP I +
Sbjct: 174 LIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKEEYSVRGFPTICYF 233
Query: 471 KKGENPVSYAGMLGT-EDLLKFIQLNRISYPVNITSIQEAEEYLSGELYK------DLIL 523
+KG Y T ED++++++ + P + A+E G +Y D +
Sbjct: 234 EKGRFLFQYDNYGSTAEDIVEWLKNPQPPQP-QVPETPWADE--GGSVYHLTDEDFDQFV 290
Query: 524 YSSVSVLGLFSPT----MKTAKEDFSEAGNYLKG 553
SVL +F K K +F +A L G
Sbjct: 291 KEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHG 324
Score = 32.3 bits (72), Expect = 1.8
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 396 LTEETFNATVMASDSI-VLFYAGWQAVSMAFLQSYIDVAVKLKGT--STMLLTRINCADW 452
LT+E F+ V S+ V+F+A W + A L G S+ +L ++
Sbjct: 281 LTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVN 340
Query: 453 SDVCTKQNVTEFPIIKMYKKGE 474
+ + +++EFP +K +K GE
Sbjct: 341 KALAERFHISEFPTLKYFKNGE 362
>gi|52487191 thioredoxin domain containing 4 (endoplasmic reticulum)
[Homo sapiens]
Length = 406
Score = 35.4 bits (80), Expect = 0.22
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 391 ELTVELTEETFNATVMASDSIVLFYAGW----QAVSMAFLQSYIDVAVKLKGTSTMLLTR 446
E+T TE A ++V FYA W Q + F ++ + + + ++ R
Sbjct: 30 EITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFAR 89
Query: 447 INCADWSDVCTKQNVTEFPIIKMYKKG 473
++C SD+ + ++++P +K+++ G
Sbjct: 90 VDCDQHSDIAQRYRISKYPTLKLFRNG 116
>gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo
sapiens]
Length = 604
Score = 32.3 bits (72), Expect = 1.8
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 396 LTEETFNATVMASDSI--VLFYAGWQAVSMAFLQSYIDVAVKLKGTSTML-LTRINCADW 452
L +T V+ S S V F+A W +AF ++ +A +K L L ++CA+
Sbjct: 45 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEE 104
Query: 453 SD--VCTKQNVTEFPIIKMYK 471
++ VC N+ FP ++ +K
Sbjct: 105 TNSAVCRDFNIPGFPTVRFFK 125
>gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo
sapiens]
Length = 747
Score = 32.3 bits (72), Expect = 1.8
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 396 LTEETFNATVMASDSI--VLFYAGWQAVSMAFLQSYIDVAVKLKGTSTML-LTRINCADW 452
L +T V+ S S V F+A W +AF ++ +A +K L L ++CA+
Sbjct: 45 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEE 104
Query: 453 SD--VCTKQNVTEFPIIKMYK 471
++ VC N+ FP ++ +K
Sbjct: 105 TNSAVCRDFNIPGFPTVRFFK 125
>gi|115430241 SCY1-like 1 isoform A [Homo sapiens]
Length = 808
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 252 LTEVAEDPQQVSTVHLQLGLPLVFIVSQQATYEADRRTAEWVAWRLLGKAGVLLLLRDSL 311
L V+EDP Q+ V V ++ A W W + G + + L S
Sbjct: 537 LESVSEDPTQLEEVEKD--------VHAASSPGMGGAAASWAGWAVTGVSSLTSKLIRSH 588
Query: 312 EVNIPQDANVVFKRAEEGVPVEFLVLHDVDLIISHVENNMHIEEIQEDEDNDMEGPDIDV 371
P + N+ + EGVP + + + H E +ED+D + D
Sbjct: 589 PTTAPTETNIPQRPTPEGVPAP-----APTPVPATPTTSGHWETQEEDKDTAEDSSTADR 643
Query: 372 QDDE 375
DDE
Sbjct: 644 WDDE 647
>gi|4826876 osteomodulin [Homo sapiens]
Length = 421
Score = 32.0 bits (71), Expect = 2.4
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 482 MLGTEDLLKFIQLNRISYPVNITSIQEAEEYLSGELYKDLIL--YSSVSVLGLFSPTMKT 539
+LG ++ K +Q N + VN+T + YL L KD I + L L S +++
Sbjct: 168 LLGYNEISK-LQTNAMDGLVNLTMLDLCYNYLHDSLLKDKIFAKMEKLMQLNLCSNRLES 226
Query: 540 AKEDFSEAGNYLKGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHA 599
+ YL + + KY LP L R + K++ IP +
Sbjct: 227 MPPGLPSSLMYLS-------LENNSISSIPEKYFDKLPKLHTLRMSHNKLQDIPYNIFNL 279
Query: 600 QDIVQI 605
+IV++
Sbjct: 280 PNIVEL 285
>gi|33356172 nibrin [Homo sapiens]
Length = 754
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 339 DVDLIISHVENNMHI-EEIQEDEDNDMEGPDIDVQDDEVAETVFRDRKRKLPLELTVELT 397
D+ I+ + + H E+++ ++ +M+ I+ DEV E +F+D K +L +++ V+
Sbjct: 527 DLKSIVKNSASKSHAAEKLRSNKKREMDDVAIE---DEVLEQLFKDTKPELEIDVKVQKQ 583
Query: 398 EETFN 402
EE N
Sbjct: 584 EEDVN 588
>gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo
sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 5.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 411 IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIK 468
IV F+A W +F Y D+++K T + +++ ++DV T+ V+ P+ K
Sbjct: 121 IVEFFANWSNDCQSFAPIYADLSLKYNCTG-LNFGKVDVGRYTDVSTRYKVSTSPLTK 177
>gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo
sapiens]
Length = 296
Score = 30.8 bits (68), Expect = 5.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 411 IVLFYAGWQAVSMAFLQSYIDVAVKLKGTSTMLLTRINCADWSDVCTKQNVTEFPIIK 468
IV F+A W +F Y D+++K T + +++ ++DV T+ V+ P+ K
Sbjct: 159 IVEFFANWSNDCQSFAPIYADLSLKYNCTG-LNFGKVDVGRYTDVSTRYKVSTSPLTK 215
>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
Length = 532
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 764 VPKCMKETDVQENDKEQHEDKSAVRKEPIETLRI----KHWNRSNWFKEAEKSFRRDKE 818
+P + D EN+ + E+KS R+E E K + +++W ++AE++ + DKE
Sbjct: 126 LPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDW-RDAEENKKEDKE 183
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 764 VPKCMKETDVQENDKEQHEDKSAVRKEPIETLRI----KHWNRSNWFKEAEKSFRRDKE 818
+P + D EN+ + E+KS R+E E K + +++W ++AE++ + DKE
Sbjct: 126 LPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDW-RDAEENKKEDKE 183
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 764 VPKCMKETDVQENDKEQHEDKSAVRKEPIETLRI----KHWNRSNWFKEAEKSFRRDKE 818
+P + D EN+ + E+KS R+E E K + +++W ++AE++ + DKE
Sbjct: 132 LPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDW-RDAEENKKEDKE 189
>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
Length = 538
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 764 VPKCMKETDVQENDKEQHEDKSAVRKEPIETLRI----KHWNRSNWFKEAEKSFRRDKE 818
+P + D EN+ + E+KS R+E E K + +++W ++AE++ + DKE
Sbjct: 132 LPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDW-RDAEENKKEDKE 189
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 764 VPKCMKETDVQENDKEQHEDKSAVRKEPIETLRI----KHWNRSNWFKEAEKSFRRDKE 818
+P + D EN+ + E+KS R+E E K + +++W ++AE++ + DKE
Sbjct: 132 LPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDW-RDAEENKKEDKE 189
>gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 759 RGTRKVPKCMKETDVQENDKEQHEDKSAVRKEPIE--TLRIKHWNRSNWFKEAEKSFRRD 816
R T+ K +++ D +++D+E H D+ + ++E +E +K++ ++A +SFR D
Sbjct: 94 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKD---LEKAVQSFRYD 150
>gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]
Length = 240
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 759 RGTRKVPKCMKETDVQENDKEQHEDKSAVRKEPIE--TLRIKHWNRSNWFKEAEKSFRRD 816
R T+ K +++ D +++D+E H D+ + ++E +E +K++ ++A +SFR D
Sbjct: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKD---LEKAVQSFRYD 145
>gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]
Length = 240
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 759 RGTRKVPKCMKETDVQENDKEQHEDKSAVRKEPIE--TLRIKHWNRSNWFKEAEKSFRRD 816
R T+ K +++ D +++D+E H D+ + ++E +E +K++ ++A +SFR D
Sbjct: 89 RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKD---LEKAVQSFRYD 145
>gi|148536853 coatomer protein complex, subunit alpha isoform 2
[Homo sapiens]
Length = 1224
Score = 30.4 bits (67), Expect = 7.0
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 103 YLFKGNILLREFPTDTLFDVNAIVAHVLFALLFSEVKYITNLEDLQNIENALKGKANII 161
Y GN+LLR+ + TLFDV L ++ S+VKY+ D+ ++ AL K I+
Sbjct: 458 YAGTGNLLLRDADSITLFDVQQ--KRTLASVKISKVKYVIWSADMSHV--ALLAKHAIV 512
>gi|6912478 karyopherin alpha 6 [Homo sapiens]
Length = 536
Score = 30.0 bits (66), Expect = 9.1
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 31/143 (21%)
Query: 180 AFVYGTTYQFVLTTEIALLESIGSEDVEYAHLYFFHCKLVLDLTQQCRRTLMEQPLTTLN 239
++V TT + V+T E ++E + S+D + L L TQ+ R+ L ++P ++
Sbjct: 70 SYVSSTTGESVITRE--MVEMLFSDDSD----------LQLATTQKFRKLLSKEPSPPID 117
Query: 240 --------IHLFIKTMK-----------APLLTEVAEDPQQVSTVHLQLGLPLVFIVSQQ 280
+ F++ +K A LT +A Q + + ++ G +FI
Sbjct: 118 EVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLN 177
Query: 281 ATYEADRRTAEWVAWRLLGKAGV 303
+ +E + A W + G + V
Sbjct: 178 SDFEDVQEQAVWALGNIAGDSSV 200
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.0 bits (66), Expect = 9.1
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 552 KGYVITGIYSEEDVLLLSTKYAASLPALLLARHTEGKIESIPLASTHAQDIVQIITD-AL 610
+ Y IT SE D+ + +ASL + + T I+S+P +T ++ +++ D +
Sbjct: 3141 RSYFITTGASETDIAVTGIDISASLQTITMESLTAETIDSVPTLTTASEVFPEVVGDESA 3200
Query: 611 LEMFPE 616
L + PE
Sbjct: 3201 LLIVPE 3206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,129,412
Number of Sequences: 37866
Number of extensions: 1261662
Number of successful extensions: 3717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3673
Number of HSP's gapped (non-prelim): 56
length of query: 825
length of database: 18,247,518
effective HSP length: 111
effective length of query: 714
effective length of database: 14,044,392
effective search space: 10027695888
effective search space used: 10027695888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.