Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KLF6 Sequence: fasta or formatted (241aa) NCBI GI: 236460555
Description:

Kruppel-like factor 6 isoform B

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [237aa] Kruppel-like factor 6 isoform C
alt prot [283aa] Kruppel-like factor 6 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          7           1
 C cysteine            4.1         10           1
 D aspartate           4.1         10           1
 E glutamate          10.8         26           2
 F phenylalanine       3.7          9           1
 G glycine             4.6         11           1
 H histidine           2.9          7           1
 I isoleucine          3.3          8           2
 K lysine              5.8         14           2
 L leucine             9.5         23           1
 M methionine          1.2          3           1
 N asparagine          1.2          3           1
 P proline             7.5         18           2
 Q glutamine           2.9          7           2
 R arginine            5.0         12           1
 S serine             17.0         41           3
 T threonine           5.0         12           1
 V valine              3.7          9           1
 W tryptophan          2.1          5           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kruppel-like factor 6 isoform B 
KLF6                  0.956   Kruppel-like factor 6 isoform A 
KLF6                  0.767   Kruppel-like factor 6 isoform C 
KLF7                  0.361   Kruppel-like factor 7 (ubiquitous) 
KLF5                  0.193   Kruppel-like factor 5 
KLF3                  0.191   Kruppel-like factor 3 (basic) 
KLF12                 0.189   Kruppel-like factor 12 
KLF1                  0.185   Kruppel-like factor 1 (erythroid) 
KLF4                  0.183   Kruppel-like factor 4 (gut) 
KLF2                  0.183   Kruppel-like factor 
KLF8                  0.179   Kruppel-like factor 8 isoform 1 
KLF10                 0.143   Kruppel-like factor 10 isoform b 
KLF10                 0.143   Kruppel-like factor 10 isoform a 
KLF11                 0.134   Kruppel-like factor 11 
KLF15                 0.134   Kruppel-like factor 15 
KLF16                 0.130   BTE-binding protein 4 
WT1                   0.126   Wilms tumor 1 isoform D 
WT1                   0.126   Wilms tumor 1 isoform C 
WT1                   0.126   Wilms tumor 1 isoform B 
WT1                   0.126   Wilms tumor 1 isoform A 
KLF17                 0.126   zinc finger protein 393 
KLF9                  0.124   Kruppel-like factor 9 
KLF13                 0.122   Kruppel-like factor 13 
EGR1                  0.122   early growth response 1 
EGR2                  0.120   early growth response 2 protein isoform b 
EGR2                  0.120   early growth response 2 protein isoform a 
EGR2                  0.120   early growth response 2 protein isoform a 
EGR2                  0.120   early growth response 2 protein isoform a 
EGR3                  0.120   early growth response 3 
KLF14                 0.118   Kruppel-like factor 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press