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Search of human proteins with 23397546
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23397546 minichromosome maintenance complex component 9
[Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23397546 minichromosome maintenance complex component 9 [Homo... 782 0.0
gi|33356547 minichromosome maintenance complex component 2 [Homo... 145 6e-35
gi|19923727 minichromosome maintenance complex component 8 isofo... 124 1e-28
gi|33469924 minichromosome maintenance complex component 8 isofo... 121 9e-28
gi|33469968 minichromosome maintenance complex component 7 isofo... 116 4e-26
gi|7427519 minichromosome maintenance complex component 6 [Homo ... 109 4e-24
gi|23510448 minichromosome maintenance complex component 5 [Homo... 107 2e-23
gi|33469922 minichromosome maintenance complex component 7 isofo... 104 2e-22
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 103 2e-22
gi|33469919 minichromosome maintenance complex component 4 [Homo... 89 5e-18
gi|33469917 minichromosome maintenance complex component 4 [Homo... 89 5e-18
gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens] 32 1.3
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens] 32 1.3
gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens] 32 1.3
gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens] 32 1.3
gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens] 32 1.3
gi|50962882 G patch domain containing 8 [Homo sapiens] 30 2.9
gi|57165428 zinc finger protein 28 [Homo sapiens] 30 2.9
gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 3.7
gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 3.7
gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo sap... 30 3.7
gi|194328783 zinc finger protein 287 [Homo sapiens] 30 3.7
gi|30794504 zinc finger protein 354C [Homo sapiens] 30 3.7
gi|41349474 PR domain containing 4 [Homo sapiens] 30 4.9
gi|116268091 PHD finger protein 23 [Homo sapiens] 29 6.4
gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [... 29 6.4
gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho... 29 6.4
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H... 29 6.4
gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens] 29 6.4
gi|47271376 zinc finger protein 615 [Homo sapiens] 29 6.4
>gi|23397546 minichromosome maintenance complex component 9 [Homo
sapiens]
Length = 391
Score = 782 bits (2020), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MNSDQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNM 60
MNSDQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNM
Sbjct: 1 MNSDQVTLVGQVFESYVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNM 60
Query: 61 FPSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDV 120
FPSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDV
Sbjct: 61 FPSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDV 120
Query: 121 GHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
GHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS
Sbjct: 121 GHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTI 240
SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTI
Sbjct: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTI 240
Query: 241 YGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPF 300
YGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPF
Sbjct: 241 YGIVMQRWKPFQQDVRCEVEIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPF 300
Query: 301 AGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQ 360
AGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQ
Sbjct: 301 AGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQ 360
Query: 361 FLKYAAKITPRSVLTTGIGSTSAGIVCDNFK 391
FLKYAAKITPRSVLTTGIGSTSAGIVCDNFK
Sbjct: 361 FLKYAAKITPRSVLTTGIGSTSAGIVCDNFK 391
>gi|33356547 minichromosome maintenance complex component 2 [Homo
sapiens]
Length = 904
Score = 145 bits (366), Expect = 6e-35
Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 37/369 (10%)
Query: 28 ILKERDEDA----HYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRRSALTILQS 83
+ KER D +VVN L + + P+E+L IFD A AL ++ +
Sbjct: 214 VFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIFDEA----ALEVVLA 269
Query: 84 LSQPEAVSMKQNLHARISGLPVCPEL--VRE-HIPKT-KDVGHFLSVTGTVIRTSLVKVL 139
+ P+ + ++H RIS LP+ EL +R+ H+ + + G S TG + + S+VK
Sbjct: 270 M-YPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVK-- 326
Query: 140 EFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDY 199
Y CNKC FV+ + +P SCP +S + ++ T ++Y
Sbjct: 327 -----YNCNKCN--FVLGPFCQSQNQEVKPGSCPECQSAGPFE------VNMEETIYQNY 373
Query: 200 QEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVR--- 256
Q I+IQE +++ G +PRS IL DLVDSCK GD++ + GI +
Sbjct: 374 QRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHNNYDGSLNTANGFP 433
Query: 257 CEVEIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFG 316
++L + + +N+ + G + DE+V+ D G I AS+ P ++G
Sbjct: 434 VFATVILANHVAKKDNKVAVGELTDEDVKMITS-----LSKDQQIGEK-IFASIAPSIYG 487
Query: 317 MYLVKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTT 376
+K +A+ L GG + +VRG+ ++LL GDPGT KSQFLKY K++ R++ TT
Sbjct: 488 HEDIKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAIFTT 547
Query: 377 GIGSTSAGI 385
G G+++ G+
Sbjct: 548 GQGASAVGL 556
>gi|19923727 minichromosome maintenance complex component 8 isoform
1 [Homo sapiens]
Length = 840
Score = 124 bits (311), Expect = 1e-28
Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 48/317 (15%)
Query: 95 NLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVF 154
++HAR+ +L + G ++++ GTV+R S +K L + ++C C +
Sbjct: 193 HIHARVYNYEPLTQLKNV---RANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQ 249
Query: 155 VIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQ--RLS 212
+Y P+ CP + C FT L SS T D+Q IKIQE + +
Sbjct: 250 SFPLPDGKYSL---PTKCP-VPVCRGRSFTALR--SSPLTVTMDWQSIKIQELMSDDQRE 303
Query: 213 VGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVM----QRWKPFQQDVRCEVEIVLKANYI 268
G IPR+++ L DLVDSC GD +TI GIV + + D +C + ++AN I
Sbjct: 304 AGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKND-KCMFLLYIEANSI 362
Query: 269 QVNNEQSS---------GIIMD---------EEVQKEFEDFWEYYKSDPFAGRNVILASL 310
+ Q + G++M+ +E+Q E F +I+ SL
Sbjct: 363 SNSKGQKTKSSEDGCKHGMLMEFSLKDLYAIQEIQAEENLF------------KLIVNSL 410
Query: 311 CPQVFGMYLVKLAVAMVLAGGIQR--TDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKI 368
CP +FG LVK +A+ L GG Q+ D +RG+ H+L+VGDPG GKSQ L+ A +
Sbjct: 411 CPVIFGHELVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNV 470
Query: 369 TPRSVLTTGIGSTSAGI 385
PR V G +T++G+
Sbjct: 471 APRGVYVCGNTTTTSGL 487
>gi|33469924 minichromosome maintenance complex component 8 isoform
2 [Homo sapiens]
Length = 824
Score = 121 bits (304), Expect = 9e-28
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 56/313 (17%)
Query: 95 NLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVF 154
++HAR+ +L + G ++++ GTV+R S +K L + ++C C +
Sbjct: 193 HIHARVYNYEPLTQLKNV---RANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQ 249
Query: 155 VIKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQ--RLS 212
+Y P+ CP + C FT L SS T D+Q IKIQE + +
Sbjct: 250 SFPLPDGKYSL---PTKCP-VPVCRGRSFTALR--SSPLTVTMDWQSIKIQELMSDDQRE 303
Query: 213 VGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCEVEIVLKANYIQVNN 272
G IPR+++ L DLVDSC GD +TI GIV +V +AN I +
Sbjct: 304 AGRIPRTIECELVHDLVDSCVPGDTVTITGIV-------------KVSNAEEANSISNSK 350
Query: 273 EQSS---------GIIMD---------EEVQKEFEDFWEYYKSDPFAGRNVILASLCPQV 314
Q + G++M+ +E+Q E F +I+ SLCP +
Sbjct: 351 GQKTKSSEDGCKHGMLMEFSLKDLYAIQEIQAEENLF------------KLIVNSLCPVI 398
Query: 315 FGMYLVKLAVAMVLAGGIQR--TDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRS 372
FG LVK +A+ L GG Q+ D +RG+ H+L+VGDPG GKSQ L+ A + PR
Sbjct: 399 FGHELVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRG 458
Query: 373 VLTTGIGSTSAGI 385
V G +T++G+
Sbjct: 459 VYVCGNTTTTSGL 471
>gi|33469968 minichromosome maintenance complex component 7 isoform
1 [Homo sapiens]
Length = 719
Score = 116 bits (290), Expect = 4e-26
Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 28/288 (9%)
Query: 107 PELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTF 166
P ++RE + VG ++V G V R S VK Y C++C Q TF
Sbjct: 146 PRVIRE--VRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGAETYQPI---QSPTF 200
Query: 167 CRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILED 226
CPS E C +++ L + +R +QE+K+QE ++ VG+IPRS+ V++E
Sbjct: 201 MPLIMCPSQE-CQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPVGNIPRSITVLVEG 259
Query: 227 DLVDSCKSGDDLTIYGIVMQRWKP-FQQDVR-------CEVEIVLKANYIQVNNEQSSGI 278
+ + GD +++ GI + + F+Q V+ E ++K N + ++E +G
Sbjct: 260 ENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEAHRIVKMNKSE-DDESGAGE 318
Query: 279 IMDEEVQK-EFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRTDA 337
+ EE+++ EDF+E + AS+ P+++G VK A+ ++L GG+ ++
Sbjct: 319 LTREELRQIAEEDFYEK-----------LAASIAPEIYGHEDVKKALLLLLVGGVDQSPR 367
Query: 338 TGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGI 385
G ++RG ++ L+GDPG KSQ L Y ++ PRS TTG GS+ G+
Sbjct: 368 -GMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGL 414
>gi|7427519 minichromosome maintenance complex component 6 [Homo
sapiens]
Length = 821
Score = 109 bits (273), Expect = 4e-24
Identities = 105/426 (24%), Positives = 190/426 (44%), Gaps = 75/426 (17%)
Query: 11 QVFESYVSEYHKND----ILLILKERDEDAHYPVVVNAMTLFETNMEIG-----EYFNMF 61
++F ++ E+ +D L + +E +VV+ + L + N ++ E++ ++
Sbjct: 28 KLFLDFLEEFQSSDGEIKYLQLAEELIRPERNTLVVSFVDLEQFNQQLSTTIQEEFYRVY 87
Query: 62 PSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREHIPKTKDVG 121
P L R+ T ++ + + + ++ + LP + +RE + +G
Sbjct: 88 PY---------LCRALKTFVKDRKE---IPLAKDFYVAFQDLPTRHK-IRELT--SSRIG 132
Query: 122 HFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDSS 181
++G V+RT V ++C C+ V D EQ + + +P+ C + +
Sbjct: 133 LLTRISGQVVRTHPVHPELVSGTFLCLDCQTVI---RDVEQQFKYTQPNICRNPVCANRR 189
Query: 182 KFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIY 241
+F L ++ +R D+Q+++IQE L GSIPRS++VIL + V+S ++GD
Sbjct: 190 RFL----LDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGDKCDFT 245
Query: 242 G---IVMQRWKPFQQDVRCEVE----------------------------IVLKANYIQV 270
G +V K R E +V A +
Sbjct: 246 GTLIVVPDVSKLSTPGARAETNSRVSGVDGYETEGIRGLRALGVRDLSYRLVFLACCVAP 305
Query: 271 NN-----------EQSSGIIMDEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYL 319
N EQ++ I ++ KE+E +E D N + SL P + G
Sbjct: 306 TNPRFGGKELRDEEQTAESIKNQMTVKEWEKVFEM-SQDKNLYHN-LCTSLFPTIHGNDE 363
Query: 320 VKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIG 379
VK V ++L GG+ +T GT +RG+ ++ +VGDP T KSQFLK+ + +PR+V T+G
Sbjct: 364 VKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPSTAKSQFLKHVEEFSPRAVYTSGKA 423
Query: 380 STSAGI 385
S++AG+
Sbjct: 424 SSAAGL 429
>gi|23510448 minichromosome maintenance complex component 5 [Homo
sapiens]
Length = 734
Score = 107 bits (267), Expect = 2e-23
Identities = 93/365 (25%), Positives = 165/365 (45%), Gaps = 17/365 (4%)
Query: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPE 88
LK Y + V L + ++ +Y P+E L + + A + A + + +P
Sbjct: 59 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPS 116
Query: 89 AVSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 148
+ Q++ + P +R K+ + H + + G +I S V+ C
Sbjct: 117 GEEVLQDIQVMLKS-DASPSSIRSL--KSDMMSHLVKIPGIIIAASAVRAKATRISIQCR 173
Query: 149 KCKHVFVIKADFEQYYTFCRPSSCPSLESCDSSKFTC-LSGLSSSPTRCR--DYQEIKIQ 205
C++ A + P C + + + C L P +C+ D+Q +K+Q
Sbjct: 174 SCRNTLTNIAMRPGLEGYALPRKC---NTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQ 230
Query: 206 EQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIV-MQRWKPFQQDVRCEVEIVLK 264
E + G +PR M++ + L D G+ +TI GI ++++ R V + ++
Sbjct: 231 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGLTTSRGRDRVGVGIR 290
Query: 265 ANYIQVNNEQ----SSGIIMDEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLV 320
++YI+V Q SG V + E+ + + P VI S+ P +FG +
Sbjct: 291 SSYIRVLGIQVDTDGSGRSFAGAVSPQEEEEFRRLAALPNV-YEVISKSIAPSIFGGTDM 349
Query: 321 KLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGS 380
K A+A +L GG ++ G RG+ +LL++GDPGT KSQ LK+ K +P V T+G GS
Sbjct: 350 KKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGS 409
Query: 381 TSAGI 385
++AG+
Sbjct: 410 SAAGL 414
>gi|33469922 minichromosome maintenance complex component 7 isoform
2 [Homo sapiens]
Length = 543
Score = 104 bits (259), Expect = 2e-22
Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 23/230 (10%)
Query: 165 TFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIPRSMKVIL 224
TF CPS E C +++ L + +R +QE+K+QE ++ VG+IPRS+ V++
Sbjct: 23 TFMPLIMCPSQE-CQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPVGNIPRSITVLV 81
Query: 225 EDDLVDSCKSGDDLTIYGIVMQRWKP-FQQDVR-------CEVEIVLKANYIQVNNEQSS 276
E + + GD +++ GI + + F+Q V+ E ++K N + ++E +
Sbjct: 82 EGENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEAHRIVKMNKSE-DDESGA 140
Query: 277 GIIMDEEVQK-EFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVAMVLAGGIQRT 335
G + EE+++ EDF+E + AS+ P+++G VK A+ ++L GG+ ++
Sbjct: 141 GELTREELRQIAEEDFYEK-----------LAASIAPEIYGHEDVKKALLLLLVGGVDQS 189
Query: 336 DATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSAGI 385
G ++RG ++ L+GDPG KSQ L Y ++ PRS TTG GS+ G+
Sbjct: 190 PR-GMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGL 238
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 103 bits (258), Expect = 2e-22
Identities = 100/366 (27%), Positives = 160/366 (43%), Gaps = 32/366 (8%)
Query: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPE 88
++E D Y ++VN L N + E L F AL+ +I +
Sbjct: 36 VRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASI-------D 88
Query: 89 AVSMKQ--NLHARISGLPVCPELVREHIPKTKDVGHFLS----VTGTVIRTSLVKVLEFE 142
A KQ + + G +H+ FLS V G V + SLV+
Sbjct: 89 ATYAKQYEEFYVGLEG-----SFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVR 143
Query: 143 RDYMCNKCKHVFVIK-ADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQE 201
+ C K + +D F S P+ + +++ GLS +D+Q
Sbjct: 144 SVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKDE-ENNPLETEYGLSVY----KDHQT 198
Query: 202 IKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQD--VRCEV 259
I IQE ++ G +PRS+ VIL+DDLVD K GD + + G R P ++
Sbjct: 199 ITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGTY--RCLPGKKGGYTSGTF 256
Query: 260 EIVLKANYIQVNNEQSSGIIMDEEVQKEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYL 319
VL A ++ ++ + E++ K + F + D F + + SL P + G
Sbjct: 257 RTVLIACNVKQMSKDAQPSFSAEDIAK-IKKFSKTRSKDIF---DQLAKSLAPSIHGHDY 312
Query: 320 VKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIG 379
VK A+ +L GG++R G+ +RG+ ++LL+GDP KSQ L+Y PR++ TTG G
Sbjct: 313 VKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRG 372
Query: 380 STSAGI 385
S+ G+
Sbjct: 373 SSGVGL 378
>gi|33469919 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 89.4 bits (220), Expect = 5e-18
Identities = 97/362 (26%), Positives = 156/362 (43%), Gaps = 51/362 (14%)
Query: 54 IGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREH 113
IGE F E + FD L R Q +S P+ V ++ P+ + EH
Sbjct: 203 IGEPFLNVNCEHIKSFDKNLYR------QLISYPQEVIPTFDMAVNEIFFDRYPDSILEH 256
Query: 114 --------IPKTK--------DVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIK 157
KTK D+ ++++G VIRTS + E + C C H ++
Sbjct: 257 QIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTTRVE 316
Query: 158 ADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIP 217
D + PS C + S L S D Q IK+QE + + G P
Sbjct: 317 MDRGR---IAEPSVCGRCHTTHSMALIHNRSLFS------DKQMIKLQESPEDMPAGQTP 367
Query: 218 RSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCE-VEIVLKAN-----YIQVN 271
++ + +DLVD + GD + + GI R P + + R V+ V K + Y + +
Sbjct: 368 HTVILFAHNDLVDKVQPGDRVNVTGIY--RAVPIRVNPRVSNVKSVYKTHIDVIHYRKTD 425
Query: 272 NEQSSGIIMDEEVQ------KEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVA 325
++ G+ DEE + K E E + R + ++L P ++ +K +
Sbjct: 426 AKRLHGL--DEEAEQKLFSEKRVELLKELSRKPDIYER--LASALAPSIYEHEDIKKGIL 481
Query: 326 MVLAGGIQRTDA-TGT-RVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSA 383
+ L GG ++ + TG + R E ++LL GDPGT KSQ L+Y + PR T+G GS++
Sbjct: 482 LQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAV 541
Query: 384 GI 385
G+
Sbjct: 542 GL 543
>gi|33469917 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 89.4 bits (220), Expect = 5e-18
Identities = 97/362 (26%), Positives = 156/362 (43%), Gaps = 51/362 (14%)
Query: 54 IGEYFNMFPSEVLTIFDSALRRSALTILQSLSQPEAVSMKQNLHARISGLPVCPELVREH 113
IGE F E + FD L R Q +S P+ V ++ P+ + EH
Sbjct: 203 IGEPFLNVNCEHIKSFDKNLYR------QLISYPQEVIPTFDMAVNEIFFDRYPDSILEH 256
Query: 114 --------IPKTK--------DVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIK 157
KTK D+ ++++G VIRTS + E + C C H ++
Sbjct: 257 QIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTTRVE 316
Query: 158 ADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVGSIP 217
D + PS C + S L S D Q IK+QE + + G P
Sbjct: 317 MDRGR---IAEPSVCGRCHTTHSMALIHNRSLFS------DKQMIKLQESPEDMPAGQTP 367
Query: 218 RSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCE-VEIVLKAN-----YIQVN 271
++ + +DLVD + GD + + GI R P + + R V+ V K + Y + +
Sbjct: 368 HTVILFAHNDLVDKVQPGDRVNVTGIY--RAVPIRVNPRVSNVKSVYKTHIDVIHYRKTD 425
Query: 272 NEQSSGIIMDEEVQ------KEFEDFWEYYKSDPFAGRNVILASLCPQVFGMYLVKLAVA 325
++ G+ DEE + K E E + R + ++L P ++ +K +
Sbjct: 426 AKRLHGL--DEEAEQKLFSEKRVELLKELSRKPDIYER--LASALAPSIYEHEDIKKGIL 481
Query: 326 MVLAGGIQRTDA-TGT-RVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSA 383
+ L GG ++ + TG + R E ++LL GDPGT KSQ L+Y + PR T+G GS++
Sbjct: 482 LQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAV 541
Query: 384 GI 385
G+
Sbjct: 542 GL 543
>gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]
Length = 1464
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 127 TGTVIRTSLVKVLEFERDYM------CNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
T +VI T + E++RDY C KC F+ + ++ S++ CD
Sbjct: 1017 THSVIHTHSIS--EYQRDYTGEQLYECPKCGESFIHSSFLFEHQRIHEQDQLYSMKGCDD 1074
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVG-------SIPRSMKVILEDDLVDSCK 233
F L + R + ++ L G ++ M++ EDDL++ +
Sbjct: 1075 G-FIALLPMKPRRNRAAERNPALAGSAIRCLLCGQGFIHSSALNEHMRLHREDDLLEQSQ 1133
Query: 234 SGDDLTIYGIVMQRWKPFQQDVR 256
++ I G+ + ++ Q + R
Sbjct: 1134 MAEEAIIPGLALTEFQRSQTEER 1156
>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 127 TGTVIRTSLVKVLEFERDYM------CNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
T +VI T + E++RDY C KC F+ + ++ S++ CD
Sbjct: 1141 THSVIHTHSIS--EYQRDYTGEQLYECPKCGESFIHSSFLFEHQRIHEQDQLYSMKGCDD 1198
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVG-------SIPRSMKVILEDDLVDSCK 233
F L + R + ++ L G ++ M++ EDDL++ +
Sbjct: 1199 G-FIALLPMKPRRNRAAERNPALAGSAIRCLLCGQGFIHSSALNEHMRLHREDDLLEQSQ 1257
Query: 234 SGDDLTIYGIVMQRWKPFQQDVR 256
++ I G+ + ++ Q + R
Sbjct: 1258 MAEEAIIPGLALTEFQRSQTEER 1280
>gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]
Length = 1462
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 127 TGTVIRTSLVKVLEFERDYM------CNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
T +VI T + E++RDY C KC F+ + ++ S++ CD
Sbjct: 1015 THSVIHTHSIS--EYQRDYTGEQLYECPKCGESFIHSSFLFEHQRIHEQDQLYSMKGCDD 1072
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVG-------SIPRSMKVILEDDLVDSCK 233
F L + R + ++ L G ++ M++ EDDL++ +
Sbjct: 1073 G-FIALLPMKPRRNRAAERNPALAGSAIRCLLCGQGFIHSSALNEHMRLHREDDLLEQSQ 1131
Query: 234 SGDDLTIYGIVMQRWKPFQQDVR 256
++ I G+ + ++ Q + R
Sbjct: 1132 MAEEAIIPGLALTEFQRSQTEER 1154
>gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 127 TGTVIRTSLVKVLEFERDYM------CNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
T +VI T + E++RDY C KC F+ + ++ S++ CD
Sbjct: 1141 THSVIHTHSIS--EYQRDYTGEQLYECPKCGESFIHSSFLFEHQRIHEQDQLYSMKGCDD 1198
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVG-------SIPRSMKVILEDDLVDSCK 233
F L + R + ++ L G ++ M++ EDDL++ +
Sbjct: 1199 G-FIALLPMKPRRNRAAERNPALAGSAIRCLLCGQGFIHSSALNEHMRLHREDDLLEQSQ 1257
Query: 234 SGDDLTIYGIVMQRWKPFQQDVR 256
++ I G+ + ++ Q + R
Sbjct: 1258 MAEEAIIPGLALTEFQRSQTEER 1280
>gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 127 TGTVIRTSLVKVLEFERDYM------CNKCKHVFVIKADFEQYYTFCRPSSCPSLESCDS 180
T +VI T + E++RDY C KC F+ + ++ S++ CD
Sbjct: 1141 THSVIHTHSIS--EYQRDYTGEQLYECPKCGESFIHSSFLFEHQRIHEQDQLYSMKGCDD 1198
Query: 181 SKFTCLSGLSSSPTRCRDYQEIKIQEQVQRLSVG-------SIPRSMKVILEDDLVDSCK 233
F L + R + ++ L G ++ M++ EDDL++ +
Sbjct: 1199 G-FIALLPMKPRRNRAAERNPALAGSAIRCLLCGQGFIHSSALNEHMRLHREDDLLEQSQ 1257
Query: 234 SGDDLTIYGIVMQRWKPFQQDVR 256
++ I G+ + ++ Q + R
Sbjct: 1258 MAEEAIIPGLALTEFQRSQTEER 1280
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 30.4 bits (67), Expect = 2.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 156 IKADFEQYYTFCRPSSCPSLESCDSSKFTCLSGLSSSP-----------TRCRDYQEIKI 204
I D E + ++ PS PS+ES D ++ L+ L S P ++ + + I
Sbjct: 1272 IAPDLEHFPSYAPPSGDPSIESTDGAEDASLAPLESQPITFTPEEMEKYSKLQQAAQQHI 1331
Query: 205 QEQVQRLSVGSIPRS 219
Q+Q+ V + P S
Sbjct: 1332 QQQLLAKQVKAFPAS 1346
>gi|57165428 zinc finger protein 28 [Homo sapiens]
Length = 665
Score = 30.4 bits (67), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 142 ERDYMCNKCKHVFVIKADF---EQYYTFCRPSSCPSLESCDSSK 182
E+ YMCN+C VF KA+ + +T +P C E S K
Sbjct: 467 EKPYMCNECGKVFSTKANLACHHKLHTAEKPYKCEECEKVFSRK 510
>gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 30.0 bits (66), Expect = 3.7
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 142 ERDYMCNKCKHVFVIKADFEQYY---TFCRPSSCPSLESCDSSKFTCL----SGLSSSPT 194
E+ YMCNKC VF KA ++Y T +P C S K L P
Sbjct: 249 EKPYMCNKCGKVFNKKAYLARHYRRHTGEKPYKCNECGKTFSDKSALLVHKTIHTGEKPY 308
Query: 195 RCRDYQEIKIQE----QVQRLSVGSIPRSMKVILEDDLVDSCKS 234
+C + ++ Q+ + R+ G P K E D V S KS
Sbjct: 309 KCNECGKVFNQQSNLARHHRVHTGEKPYQCK---ECDKVFSRKS 349
>gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 30.0 bits (66), Expect = 3.7
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 142 ERDYMCNKCKHVFVIKADFEQYY---TFCRPSSCPSLESCDSSKFTCL----SGLSSSPT 194
E+ YMCNKC VF KA ++Y T +P C S K L P
Sbjct: 249 EKPYMCNKCGKVFNKKAYLARHYRRHTGEKPYKCNECGKTFSDKSALLVHKTIHTGEKPY 308
Query: 195 RCRDYQEIKIQE----QVQRLSVGSIPRSMKVILEDDLVDSCKS 234
+C + ++ Q+ + R+ G P K E D V S KS
Sbjct: 309 KCNECGKVFNQQSNLARHHRVHTGEKPYQCK---ECDKVFSRKS 349
>gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo
sapiens]
Length = 700
Score = 30.0 bits (66), Expect = 3.7
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 142 ERDYMCNKCKHVFVIKADFEQYY---TFCRPSSCPSLESCDSSKFTCL----SGLSSSPT 194
E+ YMCNKC VF KA ++Y T +P C S K L P
Sbjct: 249 EKPYMCNKCGKVFNKKAYLARHYRRHTGEKPYKCNECGKTFSDKSALLVHKTIHTGEKPY 308
Query: 195 RCRDYQEIKIQE----QVQRLSVGSIPRSMKVILEDDLVDSCKS 234
+C + ++ Q+ + R+ G P K E D V S KS
Sbjct: 309 KCNECGKVFNQQSNLARHHRVHTGEKPYQCK---ECDKVFSRKS 349
>gi|194328783 zinc finger protein 287 [Homo sapiens]
Length = 761
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 142 ERDYMCNKCKHVFVIKADFEQY---YTFCRPSSCPSLESCDSSKFTCL 186
E+ Y CN+C F+ + Q+ +T RP C + D S+ TCL
Sbjct: 673 EKPYKCNECGKAFIYSSSLNQHQRTHTGERPYKCNECDK-DFSQRTCL 719
>gi|30794504 zinc finger protein 354C [Homo sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 3.7
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 142 ERDYMCNKCKHVFVIKADF---EQYYTFCRPSSCPSLESCDSSKFTCLSGL----SSSPT 194
E+ Y CN+C+ F ++ ++ +T +P C E S+ T + L P
Sbjct: 241 EKPYKCNECEKTFSHRSSLLSHQRIHTGEKPYKCNECEKAFSNSSTLIKHLRVHTGEKPY 300
Query: 195 RCRD 198
RCR+
Sbjct: 301 RCRE 304
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 29.6 bits (65), Expect = 4.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 140 EFERDYMCNKCKHVFVIKADFEQYYTFCR----PSSCPSLESCDSSK 182
E +RDY+C KC ++ K ++ C+ SS P E D S+
Sbjct: 725 EGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAPEEEEEDDSE 771
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 279 IMDEEVQKEF-EDFWEY---YKSDPFAGRNVILASLC 311
+MDE++ E +D W+ Y PFAGR +I SLC
Sbjct: 323 VMDEDIMVESGDDSWDLITCYCRKPFAGRPMIECSLC 359
>gi|193082993 GTP binding protein 3 (mitochondrial) isoform III
[Homo sapiens]
Length = 471
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 320 VKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIG 379
+++ V G R G R+R H+++ G P GKS + ++ P S+++ G
Sbjct: 224 IEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSR-KPVSIVSPEPG 282
Query: 380 ST 381
+T
Sbjct: 283 TT 284
>gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Homo
sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 320 VKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIG 379
+++ V G R G R+R H+++ G P GKS + ++ P S+++ G
Sbjct: 224 IEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSR-KPVSIVSPEPG 282
Query: 380 ST 381
+T
Sbjct: 283 TT 284
>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo
sapiens]
Length = 524
Score = 29.3 bits (64), Expect = 6.4
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 320 VKLAVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIG 379
+++ V G R G R+R H+++ G P GKS + ++ P S+++ G
Sbjct: 256 IEVRALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVNLLSR-KPVSIVSPEPG 314
Query: 380 ST 381
+T
Sbjct: 315 TT 316
>gi|45580730 aminoadipate-semialdehyde dehydrogenase [Homo sapiens]
Length = 1098
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 200 QEIKIQEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGIVMQRWKPFQQDVRCEV 259
+ I++ ++++L S+P +++IL + L IY ++Q P +DV
Sbjct: 591 KSIRLLSEIEKLVGTSVPGLLEIILSSSI---------LEIYNHILQTVVP-DEDVTFRK 640
Query: 260 EIVLKANYIQVNNEQSSGIIMDEEVQKEF 288
K +N E++SG + ++ F
Sbjct: 641 SCATKRKLSDINQEEASGTSLHQKAIMTF 669
>gi|47271376 zinc finger protein 615 [Homo sapiens]
Length = 731
Score = 29.3 bits (64), Expect = 6.4
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 105 VCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCNKCKHVFVIKADF---E 161
VC E ++ K+ + H + TG E+ Y+CN+C F +K+ +
Sbjct: 569 VCSECGKDLTGKSMLIAHQRTHTG-------------EKPYICNECGKGFTMKSTLSIHQ 615
Query: 162 QYYTFCRPSSCPSLESCDSS--KFTCL 186
Q +T +P C CD + K TCL
Sbjct: 616 QTHTGEKPYKC---NECDKTFRKKTCL 639
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,972,962
Number of Sequences: 37866
Number of extensions: 588048
Number of successful extensions: 2868
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2794
Number of HSP's gapped (non-prelim): 81
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.