Guide to the Human Genome
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Name: LOC388559 Sequence: fasta or formatted (700aa) NCBI GI: 169213416
Description:

PREDICTED: hypothetical protein LOC388559

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [700aa] PREDICTED: similar to hCG1778601 isoform 1
alt mRNA [700aa] PREDICTED: similar to hCG1778601 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         27           1
 C cysteine            6.0         42           2
 D aspartate           3.3         23           1
 E glutamate           7.3         51           2
 F phenylalanine       4.4         31           2
 G glycine             5.9         41           1
 H histidine           8.7         61           2
 I isoleucine          3.9         27           2
 K lysine             11.7         82           2
 L leucine             6.0         42           2
 M methionine          0.7          5           1
 N asparagine          4.4         31           2
 P proline             3.1         22           1
 Q glutamine           4.9         34           2
 R arginine            6.0         42           2
 S serine              6.1         43           2
 T threonine           5.1         36           1
 V valine              4.3         30           1
 W tryptophan          0.3          2           1
 Y tyrosine            4.0         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC388559 
LOC388559             1.000   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             1.000   PREDICTED: similar to hCG1778601 isoform 1 
ZNF845                0.687   zinc finger protein 845 
ZNF808                0.652   zinc finger protein 808 
ZNF761                0.649   zinc finger protein 761 
ZNF600                0.636   zinc finger protein 600 
ZNF28                 0.631   zinc finger protein 28 
ZNF611                0.613   zinc finger protein 611 isoform a 
ZNF611                0.613   zinc finger protein 611 isoform a 
ZNF611                0.613   zinc finger protein 611 isoform a 
ZNF813                0.579   zinc finger protein 813 
ZNF816A               0.575   zinc finger protein 816A 
ZNF611                0.570   zinc finger protein 611 isoform b 
ZNF665                0.537   zinc finger protein 665 
ZNF616                0.524   zinc finger protein 616 
ZNF836                0.524   zinc finger protein 836 
ZNF578                0.520   zinc finger protein 578 
ZNF160                0.514   zinc finger protein 160 
ZNF160                0.514   zinc finger protein 160 
ZNF160                0.514   zinc finger protein 160 
ZNF347                0.511   zinc finger protein 347 
ZNF860                0.501   zinc finger protein 860 
ZNF765                0.488   zinc finger protein 765 
ZNF841                0.476   zinc finger protein 841 
ZNF534                0.474   zinc finger protein 534 isoform 1 
ZNF468                0.473   zinc finger protein ZNF468 isoform 2 
ZNF534                0.473   zinc finger protein 534 isoform 2 
ZNF420                0.467   zinc finger protein 420 
ZNF701                0.457   zinc finger protein 701 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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