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Search of human proteins with 23308579
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308579 prostaglandin-E synthase 3 [Homo sapiens] 345 7e-96
gi|217416402 alanyl-tRNA synthetase domain containing 1 isoform ... 127 5e-30
gi|13376886 alanyl-tRNA synthetase domain containing 1 isoform 2... 109 1e-24
gi|217416407 alanyl-tRNA synthetase domain containing 1 isoform ... 96 2e-20
gi|217416405 alanyl-tRNA synthetase domain containing 1 isoform ... 90 9e-19
gi|239755416 PREDICTED: hypothetical protein [Homo sapiens] 73 9e-14
gi|239749900 PREDICTED: hypothetical protein [Homo sapiens] 73 9e-14
gi|239744200 PREDICTED: hypothetical protein XP_002343073 [Homo ... 73 9e-14
gi|239750861 PREDICTED: hypothetical protein XP_002347581 [Homo ... 39 0.001
gi|117168248 protein tyrosine phosphatase-like A domain containi... 39 0.001
gi|93141003 testican 3 isoform 1 [Homo sapiens] 34 0.061
gi|93141001 testican 3 isoform 2 [Homo sapiens] 34 0.061
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 33 0.080
gi|115529449 upstream binding transcription factor, RNA polymera... 33 0.080
gi|115529451 upstream binding transcription factor, RNA polymera... 33 0.080
gi|7657671 upstream binding transcription factor, RNA polymerase... 33 0.080
gi|118600963 Nik related kinase [Homo sapiens] 33 0.14
gi|21361794 TIP120 protein [Homo sapiens] 32 0.18
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 32 0.18
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 32 0.18
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 32 0.18
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 32 0.23
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 31 0.52
gi|7657013 apoptosis antagonizing transcription factor [Homo sap... 31 0.52
gi|110347463 human immunodeficiency virus type I enhancer bindin... 31 0.52
gi|51477718 TATA box binding protein-associated factor, RNA poly... 30 0.68
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 30 0.68
gi|217272892 elongation factor Tu GTP binding domain containing ... 30 0.88
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 30 0.88
gi|42740903 MTERF domain containing 2 [Homo sapiens] 30 1.2
>gi|23308579 prostaglandin-E synthase 3 [Homo sapiens]
Length = 160
Score = 345 bits (886), Expect = 7e-96
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
Sbjct: 1 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID 60
Query: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
Sbjct: 61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF 120
Query: 121 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
Sbjct: 121 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
>gi|217416402 alanyl-tRNA synthetase domain containing 1 isoform 1
[Homo sapiens]
Length = 586
Score = 127 bits (318), Expect = 5e-30
Identities = 58/129 (44%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Query: 2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 61
Q A WYDR YVF+EFCVEDS DV+V E ++ FSC +D + NEI+ + ++
Sbjct: 47 QHARTLWYDRPRYVFMEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVELYNEIEFYAKVNS 105
Query: 62 NDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 121
DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF+NW+DWE D + ++++ +
Sbjct: 106 KDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHVE 165
Query: 122 RFSEMMNNM 130
++E++ +
Sbjct: 166 HYAELLKKV 174
>gi|13376886 alanyl-tRNA synthetase domain containing 1 isoform 2
[Homo sapiens]
Length = 525
Score = 109 bits (272), Expect = 1e-24
Identities = 49/114 (42%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 17 IEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCC 76
+EFCVEDS DV+V E ++ FSC +D + NEI+ + ++ DS+ KR+ RSI C
Sbjct: 1 MEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVELYNEIEFYAKVNSKDSQDKRSSRSITCF 59
Query: 77 LRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNM 130
+RK + +WPRLTKE K WLSVDF+NW+DWE D + ++++ + ++E++ +
Sbjct: 60 VRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKV 113
>gi|217416407 alanyl-tRNA synthetase domain containing 1 isoform 4
[Homo sapiens]
Length = 161
Score = 95.5 bits (236), Expect = 2e-20
Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 44 SDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDF 103
+D + NEI+ + ++ DS+ KR+ RSI C +RK + +WPRLTKE K WLSVDF
Sbjct: 50 ADGVELYNEIEFYAKVNSKDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDF 109
Query: 104 NNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDD 153
+NW+DWE D + ++++ + ++E++ + P +D DDDS +DD
Sbjct: 110 DNWRDWEGDEEMELAHVEHYAELLKKVSTKRPP--PAMDDLDDDSDSADD 157
>gi|217416405 alanyl-tRNA synthetase domain containing 1 isoform 3
[Homo sapiens]
Length = 166
Score = 89.7 bits (221), Expect = 9e-19
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 36/152 (23%)
Query: 2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 61
Q A WYDR YVF+EFCVEDS DV+V E ++ FSC +D + NEI+ +
Sbjct: 47 QHARTLWYDRPRYVFMEFCVEDSTDVHVLIEDHRIVFSCKN-ADGVELYNEIEFY----- 100
Query: 62 NDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 121
K +K WLSVDF+NW+DWE D + ++++ +
Sbjct: 101 ----------------------------AKVNSKPVWLSVDFDNWRDWEGDEEMELAHVE 132
Query: 122 RFSEMMNNMGGDEDVDLPEVDGADDDSQDSDD 153
++E++ + P +D DDDS +DD
Sbjct: 133 HYAELLKKVSTKRPP--PAMDDLDDDSDSADD 162
>gi|239755416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 42
Score = 73.2 bits (178), Expect = 9e-14
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)
Query: 117 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
MS+FD FSEMMN+MGG+EDVDL DGADD SQDSDDEKMPDLE
Sbjct: 1 MSDFDYFSEMMNHMGGEEDVDL--ADGADDHSQDSDDEKMPDLE 42
>gi|239749900 PREDICTED: hypothetical protein [Homo sapiens]
Length = 42
Score = 73.2 bits (178), Expect = 9e-14
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)
Query: 117 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
MS+FD FSEMMN+MGG+EDVDL DGADD SQDSDDEKMPDLE
Sbjct: 1 MSDFDYFSEMMNHMGGEEDVDL--ADGADDHSQDSDDEKMPDLE 42
>gi|239744200 PREDICTED: hypothetical protein XP_002343073 [Homo
sapiens]
Length = 42
Score = 73.2 bits (178), Expect = 9e-14
Identities = 36/44 (81%), Positives = 39/44 (88%), Gaps = 2/44 (4%)
Query: 117 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
MS+FD FSEMMN+MGG+EDVDL DGADD SQDSDDEKMPDLE
Sbjct: 1 MSDFDYFSEMMNHMGGEEDVDL--ADGADDHSQDSDDEKMPDLE 42
>gi|239750861 PREDICTED: hypothetical protein XP_002347581 [Homo
sapiens]
Length = 190
Score = 39.3 bits (90), Expect = 0.001
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLG----GSDNFK-HLNEIDLFHCIDPN 62
W R +++ + D ++ ++ ++ L F G G + ++ HL +DL + P
Sbjct: 12 WAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDL---VKP- 67
Query: 63 DSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDR 122
+ +K T R + ++K S Q W RLTK+ + +L+ DF+ W D+SD +M +
Sbjct: 68 EPVYKLTQRQVNITVQKKVS-QWWERLTKQEKRPLFLAPDFDRWL---DESDAEMELRAK 123
Query: 123 FSEMMNNM 130
E +N +
Sbjct: 124 EEERLNKL 131
>gi|117168248 protein tyrosine phosphatase-like A domain containing
1 [Homo sapiens]
Length = 362
Score = 39.3 bits (90), Expect = 0.001
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLG----GSDNFK-HLNEIDLFHCIDPN 62
W R +++ + D ++ ++ ++ L F G G + ++ HL +DL + P
Sbjct: 12 WAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDL---VKP- 67
Query: 63 DSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDR 122
+ +K T R + ++K S Q W RLTK+ + +L+ DF+ W D+SD +M +
Sbjct: 68 EPVYKLTQRQVNITVQKKVS-QWWERLTKQEKRPLFLAPDFDRWL---DESDAEMELRAK 123
Query: 123 FSEMMNNM 130
E +N +
Sbjct: 124 EEERLNKL 131
>gi|93141003 testican 3 isoform 1 [Homo sapiens]
Length = 433
Score = 33.9 bits (76), Expect = 0.061
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 97 NWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDD 153
++ S DF+ W D EDD D+ M++ D + DED +G DDD D D
Sbjct: 386 DFASGDFHEWTDDEDDEDDIMNDEDEIED------DDED------EGDDDDGGDDHD 430
>gi|93141001 testican 3 isoform 2 [Homo sapiens]
Length = 436
Score = 33.9 bits (76), Expect = 0.061
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 97 NWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDD 153
++ S DF+ W D EDD D+ M++ D + DED +G DDD D D
Sbjct: 389 DFASGDFHEWTDDEDDEDDIMNDEDEIED------DDED------EGDDDDGGDDHD 433
>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
Length = 1054
Score = 33.5 bits (75), Expect = 0.080
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 76 CLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDED 135
C G+ + K+R K N + + SD+++ N D + +M +E
Sbjct: 856 CFSSGKDDMDFAGNVKKRTK----GAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEEF 911
Query: 136 VDLPEVDGADDDSQDSDDEKMPDLE 160
++ E G D D + E +P+LE
Sbjct: 912 AEVDEDGGTFMDVLDDESESVPELE 936
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.5 bits (75), Expect = 0.080
Identities = 24/83 (28%), Positives = 32/83 (38%)
Query: 78 RKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVD 137
RK + P R L S + ++ EDD DED D + + GGD
Sbjct: 616 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSES 675
Query: 138 LPEVDGADDDSQDSDDEKMPDLE 160
E + D D + DDE D E
Sbjct: 676 SSEDESEDGDENEEDDEDEDDDE 698
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.5 bits (75), Expect = 0.080
Identities = 24/83 (28%), Positives = 32/83 (38%)
Query: 78 RKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVD 137
RK + P R L S + ++ EDD DED D + + GGD
Sbjct: 616 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSES 675
Query: 138 LPEVDGADDDSQDSDDEKMPDLE 160
E + D D + DDE D E
Sbjct: 676 SSEDESEDGDENEEDDEDEDDDE 698
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 33.5 bits (75), Expect = 0.080
Identities = 24/83 (28%), Positives = 32/83 (38%)
Query: 78 RKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVD 137
RK + P R L S + ++ EDD DED D + + GGD
Sbjct: 653 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSES 712
Query: 138 LPEVDGADDDSQDSDDEKMPDLE 160
E + D D + DDE D E
Sbjct: 713 SSEDESEDGDENEEDDEDEDDDE 735
>gi|118600963 Nik related kinase [Homo sapiens]
Length = 1582
Score = 32.7 bits (73), Expect = 0.14
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 110 EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE 154
+ D D+D + D F + ++ G++D+D +VD A+D +D DD+
Sbjct: 929 DTDGDDDDESNDTFEDTYDHANGNDDLD-NQVDQANDVCKDHDDD 972
>gi|21361794 TIP120 protein [Homo sapiens]
Length = 1230
Score = 32.3 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 133 DEDVDLPEVDGADDDSQDSDDEKMPD 158
DED + + DG DDD Q SDDE D
Sbjct: 317 DEDENAMDADGGDDDDQGSDDEYSDD 342
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 27 VNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSW 86
+N++ K K S + N K+L +DLF+C N ++ +S
Sbjct: 93 LNLSGNKIK-DLSTVEALQNLKNLKSLDLFNCEITNLEDYR----------------ESI 135
Query: 87 PRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADD 146
L ++ L+ + N D E++ DED D E N G E + E + ++
Sbjct: 136 FELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDE-EEEENEAGPPEGYEEEEEEEEEE 194
Query: 147 DSQDSDDE 154
D + +DE
Sbjct: 195 DEDEDEDE 202
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 27 VNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSW 86
+N++ K K S + N K+L +DLF+C N ++ +S
Sbjct: 45 LNLSGNKIK-DLSTVEALQNLKNLKSLDLFNCEITNLEDYR----------------ESI 87
Query: 87 PRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADD 146
L ++ L+ + N D E++ DED D E N G E + E + ++
Sbjct: 88 FELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDE-EEEENEAGPPEGYEEEEEEEEEE 146
Query: 147 DSQDSDDE 154
D + +DE
Sbjct: 147 DEDEDEDE 154
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 32.3 bits (72), Expect = 0.18
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 44 SDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDF 103
SD H +E + +D K R D+S K ++ R S D
Sbjct: 123 SDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDD 182
Query: 104 NNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDL 159
++ +D+ +S+ +R ++ + D + P DD+ Q+SDDE+ P L
Sbjct: 183 EKMQNTDDEERPQLSDDER-QQLSEEEKANSDDERPVASDNDDEKQNSDDEEQPQL 237
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 32.0 bits (71), Expect = 0.23
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 46 NFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNN 105
N K+L +DLF+C N ++ +S L ++ L+ + N
Sbjct: 70 NLKNLKSLDLFNCEITNLEDYR----------------ESIFELLQQITYLDGFDQEDNE 113
Query: 106 WKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE 154
D E++ DED D E N G E + E + ++D + +DE
Sbjct: 114 APDSEEEDDEDGDEDDE-EEEENEAGPPEGYEEEEEEEEEEDEDEDEDE 161
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 30.8 bits (68), Expect = 0.52
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 110 EDDSDEDMSNFDRFSEMMNNMGGDEDVD----LPEVDGADDDSQDSDDEK 155
EDD D + FD + ++ GDED D E G D++ +D D+++
Sbjct: 180 EDDEDGEEEEFDEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDE 229
Score = 26.6 bits (57), Expect = 9.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 108 DWEDDSDEDMS---NFDRFSEMMNNMG-----GDEDVDLPEVDGADDD--SQDSDDEKMP 157
D EDD DED+ + D SE G DED D E +G + +++DDE
Sbjct: 191 DEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDEEEEEGGKGEKRKRETDDEGED 250
Query: 158 D 158
D
Sbjct: 251 D 251
>gi|7657013 apoptosis antagonizing transcription factor [Homo
sapiens]
Length = 560
Score = 30.8 bits (68), Expect = 0.52
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 113 SDEDMSNFDRFSEMMNNMGG-----DEDVDLPEVDGADDDSQDSDDEKMPD 158
S + +S+F++F++ M+++G DE+ + E D A+D +S++++ D
Sbjct: 150 SVQSISDFEKFTKGMDDLGSSEEEEDEESGMEEGDDAEDSQGESEEDRAGD 200
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 30.8 bits (68), Expect = 0.52
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 99 LSVDFNNWKDWEDDSDEDMSNFDRFSEM--MNNMGGDEDV-DLPEVDGADDDSQDSDDEK 155
L V + D E + E++ + + +E M+++ D D E DG D D D DDE
Sbjct: 1858 LGVSMTSVDDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDED 1917
Query: 156 MPDLE 160
D +
Sbjct: 1918 EDDFD 1922
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 30.4 bits (67), Expect = 0.68
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 99 LSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEK 155
+S ++ K S+ DM + FS+ +N DED D + D +D+ +D D E+
Sbjct: 302 ISSGMSSHKQGHTSSEYDMLR-EMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEE 357
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 30.4 bits (67), Expect = 0.68
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 27 VNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSW 86
V + E S+ S L D+ N+ D ++ N S +++ S
Sbjct: 338 VKIESETSEKKKSTLPPFDDIVDPNDSD----VEENISSKSDSEQPSPASSSSSSSSSFT 393
Query: 87 PRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMN--NMGGDEDVDLPEVDGA 144
P T+++ L + D ++ D E++SDE N D SEM N GG + DG+
Sbjct: 394 PSQTRQQGPLRSIMKDLHS-DDNEEESDEVEDN-DNDSEMERPVNRGGSRSRRVSLSDGS 451
Query: 145 DDDSQDS 151
D +S +
Sbjct: 452 DSESSSA 458
>gi|217272892 elongation factor Tu GTP binding domain containing 2
isoform a [Homo sapiens]
Length = 972
Score = 30.0 bits (66), Expect = 0.88
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 102 DFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE 154
+F N+ E DSDED R ++ ++ M D+D DDD D DD+
Sbjct: 8 EFGNYIGPELDSDEDDDELGRETKDLDEMDDDDD---------DDDVGDHDDD 51
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 30.0 bits (66), Expect = 0.88
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 81 ESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE 140
+ G+ PR+TK+ + + +DD +E+ N D E N G D D E
Sbjct: 18 DEGEVVPRVTKKFVE------------EEDDDEEEEEENLDDQDEQGNLKGFINDDD-DE 64
Query: 141 VDGADDDSQDSDDEK 155
+G +D+ DS D +
Sbjct: 65 DEGEEDEGSDSGDSE 79
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 110 EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEK 155
EDD DE+ ++ D DED D + D A+D+ +D DD++
Sbjct: 343 EDDDDEEDNDED---------DNDEDDDDEDDDEAEDNDEDEDDDE 379
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 110 EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE 154
E++ E ++ D+ + + + D++ D E D +DD + DDE
Sbjct: 323 EEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDE 367
Score = 28.9 bits (63), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 100 SVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE 154
S+D + D E+D+DED ++ D D+D D E + D+D D ++E
Sbjct: 338 SLDEDEDDDDEEDNDEDDNDED-----------DDDEDDDEAEDNDEDEDDDEEE 381
Score = 27.7 bits (60), Expect = 4.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 110 EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 160
E++S+ S+ R S + DED D E + DD+ +D DDE + E
Sbjct: 324 EEESESSTSDDKRAS-----LDEDEDDDDEEDNDEDDNDEDDDDEDDDEAE 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,857,901
Number of Sequences: 37866
Number of extensions: 310364
Number of successful extensions: 1174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 249
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.