Guide to the Human Genome
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Name: LOC100292911 Sequence: fasta or formatted (42aa) NCBI GI: 239755416
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          2           1
 C cysteine            0.0          0           0
 D aspartate          26.2         11           2
 E glutamate          11.9          5           2
 F phenylalanine       4.8          2           1
 G glycine             7.1          3           2
 H histidine           4.8          2           1
 I isoleucine          0.0          0           0
 K lysine              2.4          1           1
 L leucine             4.8          2           1
 M methionine         11.9          5           2
 N asparagine          2.4          1           1
 P proline             2.4          1           1
 Q glutamine           2.4          1           1
 R arginine            0.0          0           0
 S serine              9.5          4           1
 T threonine           0.0          0           0
 V valine              2.4          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289608          1.000   PREDICTED: hypothetical protein 
LOC100289608          1.000   PREDICTED: hypothetical protein XP_002343073 
PTGES3                0.716   prostaglandin-E synthase 3 
PRKD1                 0.015   protein kinase D1 
C11orf58              0.015   small acidic protein isoform b 
C11orf58              0.015   small acidic protein isoform a 
CAND1                 0.015   TIP120 protein 
C11orf51              0.015   hypothetical protein LOC25906 
TRIM26                0.015   tripartite motif-containing 26 
TAF7L                 0.015   TATA box binding protein-associated factor, RNA poly...
LEO1                  0.015   Leo1, Paf1/RNA polymerase II complex component, homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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